Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Reverse (-)

46544828 .. 46548306

Gene Structure 3479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0314200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGGAAGTTGAAGAAGCTAACAAAGCTGCTGTTGCAAGCTGCCATAGAGTTTTGAATCTGTTGTCTCAGCCACAAGATCAAGTTCAGTTTAGGAATTTAAAGGCGGAAACTGGGGAGGCTGTGTTTAGGTTCAAGAAAGTTGCCTCTCTTCTCAAGACTGGTTTGGGTCATGCTAGAGTTAGAAAGCTCAAGAAACTTCAAATCCCTTTTCCTGAAAGTGTCCTCTTAGATAATCCTAATTGTACAACAGACCATCACTCTAAAAATCCTCATTTTCTTCAATCTAGATTTGCTGAGAACCCAGCTCAAGATTTGAGTTTAAATGTTAGAAATTCCTTAAGTTTGGGAAACCCCTCTTTGGAATTGAGCGCTAATGGGAAAACCCCAATTCAACTACAACAAGCACTTCCAGCGCACTATCACTTCCTTCAGCAGCAACAGCAGCATCAACAACAGCAGCAGCAGCAGCAGAGGCTATTGCTTCAGCAGCAGCATATGAAACAACAAGCGGAAATGATGTACCGGAGGAGCAATAGTGGCATAAACCTCAACTTTGATAGCTCTAGCTGCACACCCACAATGTCATCTACAAGGTCCTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACTTGGAGGGTAACTCATTCCATTTGATTGGAGCTCCTATCTCTTCTTCGGATCAAAATTCACAACATAAGAGGAAGTGTTCCGCGAGGGGGGATGACGGCAGTGCAAAATGCGGTAGCAGTGGTAGGTGTCACTGCTCAAAGAAGAGGAAACATAGGGTGAAAAGGTCAATTAAGGTGCCTGCTATTAGTAACAAGCTAGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTACGGCCAGAAGCCAATCAAGGGATCTCCTCACCCTAGGGGATACTATAAATGTAGTAGCATGAGAGGTTGTCCGGCCAGGAAGCATGTGGAGAGATGCTTGGAAGAACCTTCCATGCTTATCGTCACCTATGAAGGCGAACATAACCACCCAAGGATACCATCACAATCCACAACGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

351

Amino Acids

39.41

Weight (kDa)

9.69

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	236 - 281	4.9e-18	Plant zinc cluster domain
WRKY	PF03106	285 - 342	3.4e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	814
AccII	CGCG	1 cut(s)	722
AciI	CCGC	4 cut(s)	107, 512, 720, 750
AclWI	GGATC	2 cut(s)	696, 904
AcoI	YGGCCR	2 cut(s)	877, 948
AcsI	RAATTY	3 cut(s)	97, 334, 694
AcuI	CTGAAG	2 cut(s)	416, 470
AfaI	GTAC	3 cut(s)	247, 524, 875
AfeI	AGCGCT	1 cut(s)	373
AfiI	CCNNNNNNNGG	3 cut(s)	361, 726, 893
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	6 cut(s)	14, 58, 136, 203, 284, 395
AjnI	CCWGG	1 cut(s)	950
AluBI	AGCT	9 cut(s)	20, 29, 42, 190, 308, 564, 570, 671, 835
AluI	AGCT	9 cut(s)	20, 29, 42, 190, 308, 564, 570, 671, 835
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	696, 904
Aor51HI	AGCGCT	1 cut(s)	373
AoxI	GGCC	2 cut(s)	877, 948
ApoI	RAATTY	3 cut(s)	97, 334, 694
AspA2I	CCTAGG	1 cut(s)	908
AspLEI	GCGC	2 cut(s)	374, 418
AspS9I	GGNCC	1 cut(s)	597
AsuHPI	GGTGA	3 cut(s)	808, 896, 991
AsuNHI	GCTAGC	1 cut(s)	835
AvaII	GGWCC	1 cut(s)	597
AvrII	CCTAGG	1 cut(s)	908
BanI	GGYRCC	1 cut(s)	814
BanII	GRGCYC	1 cut(s)	673
Bbv12I	GWGCWC	1 cut(s)	673
BccI	CCATC	3 cut(s)	264, 617, 1042
BceAI	ACGGC	2 cut(s)	751, 892
BciT130I	CCWGG	1 cut(s)	952
BciVI	GTATCC	2 cut(s)	908, 1023
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	5 cut(s)	177, 288, 567, 836, 909
BfoI	RGCGCY	1 cut(s)	375
BfrI	CTTAAG	1 cut(s)	340
BfuI	GTATCC	2 cut(s)	908, 1023
BlnI	CCTAGG	1 cut(s)	908
Bme1390I	CCNGG	1 cut(s)	952
Bme18I	GGWCC	1 cut(s)	597
BmgT120I	GGNCC	1 cut(s)	597
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	1 cut(s)	952
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	457, 959
BmtI	GCTAGC	1 cut(s)	839
BmuI	ACTGGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpuEI	CTTGAG	4 cut(s)	140, 176, 294, 634
BsaJI	CCNNGG	2 cut(s)	908, 1025
BsaWI	WCCGGW	1 cut(s)	525
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 523, 553
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 726, 893
Bse1I	ACTGG	2 cut(s)	118, 166
BseBI	CCWGG	1 cut(s)	952
BseDI	CCNNGG	2 cut(s)	908, 1025
BseGI	GGATG	1 cut(s)	736
BseLI	CCNNNNNNNGG	3 cut(s)	361, 726, 893
BseMII	CTCAG	2 cut(s)	83, 288
BseNI	ACTGG	2 cut(s)	118, 166
BseRI	GAGGAG	2 cut(s)	544, 891
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	722
BshFI	GGCC	2 cut(s)	879, 950
BshNI	GGYRCC	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	673
BsiSI	CCGG	2 cut(s)	526, 947
BslI	CCNNNNNNNGG	3 cut(s)	361, 726, 893
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	879, 950
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	79, 688, 896
BspACI	CCGC	4 cut(s)	107, 512, 720, 750
BspANI	GGCC	2 cut(s)	879, 950
BspCNI	CTCAG	2 cut(s)	82, 289
BspFNI	CGCG	1 cut(s)	722
BspLI	GGNNCC	1 cut(s)	816
BspOI	GCTAGC	1 cut(s)	839
BspPI	GGATC	2 cut(s)	696, 904
BspT107I	GGYRCC	1 cut(s)	814
BspTI	CTTAAG	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	118, 166
BssECI	CCNNGG	2 cut(s)	908, 1025
BssMI	GATC	3 cut(s)	79, 688, 896
BssT1I	CCWWGG	2 cut(s)	908, 1025
Bst2UI	CCWGG	1 cut(s)	952
Bst6I	CTCTTC	3 cut(s)	156, 685, 776
BstAFI	CTTAAG	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	3 cut(s)	40, 819, 837
BstDEI	CTNAG	3 cut(s)	69, 229, 297
BstF5I	GGATG	1 cut(s)	736
BstFNI	CGCG	1 cut(s)	722
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	374, 418
BstKTI	GATC	3 cut(s)	82, 691, 899
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	79, 688, 896
BstNI	CCWGG	1 cut(s)	952
BstNSI	RCATGY	1 cut(s)	962
BstSCI	CCNGG	1 cut(s)	950
BstUI	CGCG	1 cut(s)	722
BstX2I	RGATCY	1 cut(s)	896
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	896
BsuI	GTATCC	2 cut(s)	908, 1023
BsuRI	GGCC	2 cut(s)	879, 950
BtsCI	GGATG	1 cut(s)	736
BtsI	GCAGTG	3 cut(s)	745, 763, 769
BtsIMutI	CAGTG	3 cut(s)	745, 763, 769
Cac8I	GCNNGC	3 cut(s)	40, 819, 837
CfoI	GCGC	2 cut(s)	374, 418
Cfr13I	GGNCC	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	246, 523, 874
CviAII	CATG	5 cut(s)	173, 864, 934, 959, 988
CviQI	GTAC	3 cut(s)	246, 523, 874
DdeI	CTNAG	3 cut(s)	69, 229, 297
DpnI	GATC	3 cut(s)	81, 690, 898
DpnII	GATC	3 cut(s)	79, 688, 896
DraI	TTTAAA	2 cut(s)	102, 324
EaeI	YGGCCR	2 cut(s)	877, 948
Eam1104I	CTCTTC	3 cut(s)	156, 685, 776
EarI	CTCTTC	3 cut(s)	156, 685, 776
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	671
Eco130I	CCWWGG	2 cut(s)	908, 1025
Eco24I	GRGCYC	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	597
Eco47III	AGCGCT	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	416, 470
EcoICRI	GAGCTC	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	950
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	2 cut(s)	908, 1025
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	2 cut(s)	908, 1025
FaeI	CATG	5 cut(s)	176, 867, 937, 962, 991
FatI	CATG	5 cut(s)	172, 863, 933, 958, 987
FauNDI	CATATG	1 cut(s)	498
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	1 cut(s)	673
FspBI	CTAG	5 cut(s)	177, 288, 567, 836, 909
GlaI	GCGC	2 cut(s)	373, 417
GsaI	CCCAGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	879, 950
HapII	CCGG	2 cut(s)	526, 947
HhaI	GCGC	2 cut(s)	374, 418
Hin1II	CATG	5 cut(s)	176, 867, 937, 962, 991
Hin6I	GCGC	2 cut(s)	372, 416
HinP1I	GCGC	2 cut(s)	372, 416
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	2 cut(s)	526, 947
HphI	GGTGA	3 cut(s)	808, 896, 991
Hpy188I	TCNGA	1 cut(s)	688
Hpy188III	TCNNGA	7 cut(s)	136, 157, 193, 215, 288, 311, 851
Hpy99I	CGWCG	1 cut(s)	1054
HpyAV	CCTTC	4 cut(s)	440, 610, 993, 1001
HpyCH4IV	ACGT	1 cut(s)	1052
HpyCH4V	TGCA	3 cut(s)	38, 573, 743
HpyF3I	CTNAG	3 cut(s)	69, 229, 297
HpySE526I	ACGT	1 cut(s)	1052
Hsp92II	CATG	5 cut(s)	176, 867, 937, 962, 991
HspAI	GCGC	2 cut(s)	372, 416
Kzo9I	GATC	3 cut(s)	79, 688, 896
LmnI	GCTCC	3 cut(s)	531, 668, 676
LweI	GCATC	2 cut(s)	457, 959
MaeI	CTAG	5 cut(s)	177, 288, 567, 836, 909
MaeII	ACGT	1 cut(s)	1052
MaeIII	GTNAC	4 cut(s)	647, 767, 827, 997
MalI	GATC	3 cut(s)	81, 690, 898
MboI	GATC	3 cut(s)	79, 688, 896
MboII	GAAGA	8 cut(s)	26, 143, 272, 600, 672, 675, 793, 989
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	7 cut(s)	97, 241, 334, 365, 390, 694, 807
MseI	TTAA	4 cut(s)	101, 323, 341, 810
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	2 cut(s)	526, 947
MspR9I	CCNGG	1 cut(s)	952
MvaI	CCWGG	1 cut(s)	952
MvnI	CGCG	1 cut(s)	722
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	3 cut(s)	79, 688, 896
NheI	GCTAGC	1 cut(s)	835
NlaIII	CATG	5 cut(s)	176, 867, 937, 962, 991
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	2 cut(s)	767, 997
NspI	RCATGY	1 cut(s)	962
PfeI	GAWTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	673
Psp5II	RGGWCCY	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	950
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	950
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	1 cut(s)	597
PspPPI	RGGWCCY	1 cut(s)	597
PsuI	RGATCY	1 cut(s)	896
RsaI	GTAC	3 cut(s)	247, 524, 875
RsaNI	GTAC	3 cut(s)	246, 523, 874
SacI	GAGCTC	1 cut(s)	673
SaqAI	TTAA	4 cut(s)	101, 323, 341, 810
Sau3AI	GATC	3 cut(s)	79, 688, 896
Sau96I	GGNCC	1 cut(s)	597
ScrFI	CCNGG	1 cut(s)	952
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	457, 959
SinI	GGWCC	1 cut(s)	597
SmlI	CTYRAG	5 cut(s)	155, 191, 309, 340, 613
SmoI	CTYRAG	5 cut(s)	155, 191, 309, 340, 613
Sse9I	AATT	7 cut(s)	97, 241, 334, 365, 390, 694, 807
SsiI	CCGC	4 cut(s)	107, 512, 720, 750
SspMI	CTAG	5 cut(s)	177, 288, 567, 836, 909
SstI	GAGCTC	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	950
StyI	CCWWGG	2 cut(s)	908, 1025
TaiI	ACGT	1 cut(s)	1055
TasI	AATT	7 cut(s)	97, 241, 334, 365, 390, 694, 807
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	101, 323, 341, 810
Tru9I	TTAA	4 cut(s)	101, 323, 341, 810
TscAI	CASTG	3 cut(s)	745, 763, 776
TseFI	GTSAC	2 cut(s)	767, 997
Tsp45I	GTSAC	2 cut(s)	767, 997
TspDTI	ATGAA	4 cut(s)	515, 592, 852, 1020
TspRI	CASTG	3 cut(s)	745, 763, 776
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	597
XapI	RAATTY	3 cut(s)	97, 334, 694
XbaI	TCTAGA	1 cut(s)	287
XceI	RCATGY	1 cut(s)	962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XmaJI	CCTAGG	1 cut(s)	908
XspI	CTAG	5 cut(s)	177, 288, 567, 836, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.