Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Reverse (-)

5261631 .. 5286300

Gene Structure 24670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0040800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAGAAAGAACAGAGAGTCTACAAAGCTCACTGTTTGGTCTTTCCCTATCCTAGTCAAGGCCATATTAACCCTTTGCTCCAATTTTCTAAGCTTTTAGATCACAAAGGAGTCAAAGTCACACTGGTCACTACTCGTTTTATCTACAAGACAATGTACAGAGGATCAAGTTGCACTGCCCTTGAGACTATCTCACTGGAGACCATCTCCGATGGTTATGACGAAGGCTGGAAAACGCAGGGAATAAGTATTCAAGCATATTTGGAGAGCTTTCGGAAAGTCGGGTCACAGACTTTGGCTGAGCTCATTGAGAAGCTATCCGGCTCAGGGTGCCCAGTTGACTGCCTTGTTTATGATGCGTTCATGCCTTGGCCTTTGGACATTGCTAAGAAGTTTGGAATAGTCGGGGCTGTTTTCTTTACTCAGTCTTGTGCTGTTGACAACATTTACAACCATGTCAACAAAGGGCTGCTGAAACTTCCTCTTACTGACTCTGAAATTTCACTTCCTGGGATGCCACCACTTGAGCCTTTGGACCTGCCATCTTTTGTATATGATTTCGGGTCTTACCCAGCTTTCTTTGAAGTTGTTATCGGTCAGTTCTCCACTGTTGACAAAGCCGATTGGGTCCTCTGCAACACATTTTATGAGTTGGAAGAACAAGTGGTGGATTGGATGGCAAAGTTTTGGCCACTGAGGACCATTGGACCAACTATACCATCTAACTATTTGGATAACCGACTTGAAGATGACAAAGATTATGGCGTTGACCTCTTTAGATCCAACAATGATGCCTGCATGAAATGGTTAAACGAACATCCAAAGAACTCTGTTGCTTACATCTCATTCGGCAGCTTTGCACAACTGGGACTTGAGCAAATGGAGGAACTGGCATGGGGTTTGAGGAGAAGCAAAAGCAAGTTCTTGTGGGTGGTTAGAGAATCAGAAGCAGCTAAAGTCCCCAAAGGGTTTATCGAGGAGACAGCTGAGAAGGGTTTGGTGGTTTCATGGTGCTGCCAACTAGAGGTTTTGGCTCATGAAGCTGTTGGGTGCTTCATTACACATTGTGGTTGGAACTCAACTTTGGAGTCTCTGTGTTTGGGAGTTCCATTAGTGGCAATGCCACAATGGAGTGACCAAAGCACCAATGCCAAGTACATTAGGGATGTGTGGAAGATAGGGGTTAAAGCTCAACCTGATGAGAAAGGCATTGTAAGGCGAGAAGAACTAGAGCATTGTATGAGTGAAATCATGGAAGGGGGGAGAGGAAAAGAAATACAAAAGAATGCCATGAAATGGAAAGATTTGGCTAGAAAGGCAGTGATTGAAGGCGGAAGTTCCGACAAAAACATTGATGAGTTCATTGCAACGTTGGTTAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

461

Amino Acids

52.11

Weight (kDa)

5.4

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	270 - 433	5.4e-24	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	330
AccB7I	CCANNNNNTGG	1 cut(s)	1296
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	1 cut(s)	1332
AclI	AACGTT	1 cut(s)	1370
AclWI	GGATC	2 cut(s)	172, 774
AcoI	YGGCCR	1 cut(s)	689
AcsI	RAATTY	1 cut(s)	498
AdeI	CACNNNGTG	1 cut(s)	1067
AfaI	GTAC	2 cut(s)	158, 1157
AfiI	CCNNNNNNNGG	4 cut(s)	59, 327, 1024, 1296
AgsI	TTSAA	4 cut(s)	254, 584, 746, 1328
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	1067, 1099
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	4 cut(s)	179, 194, 974, 1095
AlwI	GGATC	2 cut(s)	172, 774
AoxI	GGCC	3 cut(s)	61, 371, 689
ApeKI	GCWGC	4 cut(s)	469, 852, 950, 1014
ApoI	RAATTY	1 cut(s)	498
AspS9I	GGNCC	4 cut(s)	535, 628, 699, 707
AvaII	GGWCC	4 cut(s)	535, 628, 699, 707
BaeGI	GKGCMC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	691
BanI	GGYRCC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	456, 864, 962, 1001
BccI	CCATC	5 cut(s)	206, 212, 550, 670, 727
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	4 cut(s)	179, 194, 974, 1095
BfaI	CTAG	4 cut(s)	54, 1022, 1229, 1311
BfuAI	ACCTGC	1 cut(s)	546
BisI	GCNGC	4 cut(s)	470, 853, 951, 1015
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	4 cut(s)	471, 854, 952, 1016
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	4 cut(s)	535, 628, 699, 707
BmgT120I	GGNCC	4 cut(s)	535, 628, 699, 707
BmiI	GGNNCC	2 cut(s)	332, 629
BmrFI	CCNGG	1 cut(s)	510
BmrI	ACTGGG	2 cut(s)	329, 875
BmsI	GCATC	3 cut(s)	346, 504, 781
BmuI	ACTGGG	2 cut(s)	329, 875
BplI	GAGNNNNNCTC	4 cut(s)	176, 208, 191, 223
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	3 cut(s)	203, 545, 893
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	368, 509
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 1079, 1109
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 327, 1024, 1296
Bse1I	ACTGG	5 cut(s)	129, 201, 335, 870, 894
Bse3DI	GCAATG	3 cut(s)	381, 1125, 1362
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	368, 509
BseGI	GGATG	4 cut(s)	519, 681, 817, 1171
BseLI	CCNNNNNNNGG	4 cut(s)	59, 327, 1024, 1296
BseMI	GCAATG	3 cut(s)	381, 1125, 1362
BseMII	CTCAG	5 cut(s)	291, 339, 437, 686, 978
BseNI	ACTGG	5 cut(s)	129, 201, 335, 870, 894
BseRI	GAGGAG	2 cut(s)	919, 992
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	4 cut(s)	456, 864, 962, 1001
BseYI	CCCAGC	1 cut(s)	571
BshFI	GGCC	3 cut(s)	63, 373, 691
BshNI	GGYRCC	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	882, 944
BslI	CCNNNNNNNGG	4 cut(s)	59, 327, 1024, 1296
BsmAI	GTCTC	4 cut(s)	179, 194, 974, 1095
BsmFI	GGGAC	2 cut(s)	882, 944
BsmI	GAATGC	1 cut(s)	1291
BsnI	GGCC	3 cut(s)	63, 373, 691
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	306, 335
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	100, 164, 779
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	1332
BspANI	GGCC	3 cut(s)	63, 373, 691
BspCNI	CTCAG	5 cut(s)	292, 338, 436, 687, 979
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	2 cut(s)	332, 629
BspMI	ACCTGC	1 cut(s)	546
BspPI	GGATC	2 cut(s)	172, 774
BspT107I	GGYRCC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	3 cut(s)	381, 1125, 1362
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	5 cut(s)	129, 201, 335, 870, 894
BssECI	CCNNGG	2 cut(s)	368, 509
BssMI	GATC	3 cut(s)	100, 164, 779
BssT1I	CCWWGG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	35, 610
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	7 cut(s)	90, 300, 325, 387, 423, 695, 987
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	4 cut(s)	519, 681, 817, 1171
BstKTI	GATC	3 cut(s)	103, 167, 782
BstMAI	GTCTC	4 cut(s)	179, 194, 974, 1095
BstMBI	GATC	3 cut(s)	100, 164, 779
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 1040, 1316
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	335
BstV1I	GCAGC	4 cut(s)	456, 864, 962, 1001
BstX2I	RGATCY	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	779
BsuRI	GGCC	3 cut(s)	63, 373, 691
BtsCI	GGATG	4 cut(s)	519, 681, 817, 1171
BtsI	GCAGTG	2 cut(s)	174, 1326
BtsIMutI	CAGTG	7 cut(s)	31, 122, 174, 194, 606, 692, 1326
BveI	ACCTGC	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	796
CciI	TCATGA	1 cut(s)	1036
Cfr13I	GGNCC	4 cut(s)	535, 628, 699, 707
Csp6I	GTAC	2 cut(s)	157, 1156
CviAII	CATG	8 cut(s)	364, 455, 799, 894, 1008, 1037, 1252, 1291
CviQI	GTAC	2 cut(s)	157, 1156
DdeI	CTNAG	7 cut(s)	90, 300, 325, 387, 423, 695, 987
DpnI	GATC	3 cut(s)	102, 166, 781
DpnII	GATC	3 cut(s)	100, 164, 779
DraIII	CACNNNGTG	1 cut(s)	1067
EaeI	YGGCCR	1 cut(s)	689
EciI	GGCGGA	1 cut(s)	1347
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	4 cut(s)	535, 628, 699, 707
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	8 cut(s)	367, 458, 802, 897, 1011, 1040, 1255, 1294
FaqI	GGGAC	2 cut(s)	882, 944
FatI	CATG	8 cut(s)	363, 454, 798, 893, 1007, 1036, 1251, 1290
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	470, 853, 951, 1015
FokI	GGATG	4 cut(s)	526, 688, 804, 1178
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	4 cut(s)	470, 853, 951, 1015
FspBI	CTAG	4 cut(s)	54, 1022, 1229, 1311
GluI	GCNGC	4 cut(s)	470, 853, 951, 1015
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	3 cut(s)	63, 373, 691
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	8 cut(s)	367, 458, 802, 897, 1011, 1040, 1255, 1294
HincII	GTYRAC	5 cut(s)	340, 439, 460, 613, 769
HindII	GTYRAC	5 cut(s)	340, 439, 460, 613, 769
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	5 cut(s)	18, 111, 491, 941, 1088
HpaII	CCGG	1 cut(s)	321
Hpy166II	GTNNAC	6 cut(s)	22, 340, 439, 460, 613, 769
Hpy188I	TCNGA	5 cut(s)	211, 276, 496, 946, 1342
Hpy188III	TCNNGA	1 cut(s)	1037
Hpy8I	GTNNAC	6 cut(s)	22, 340, 439, 460, 613, 769
HpyAV	CCTTC	4 cut(s)	218, 985, 1250, 1322
HpyCH4III	ACNGT	2 cut(s)	35, 610
HpyCH4IV	ACGT	1 cut(s)	1370
HpyCH4V	TGCA	5 cut(s)	174, 636, 798, 860, 1367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 1040, 1316
HpyF3I	CTNAG	7 cut(s)	90, 300, 325, 387, 423, 695, 987
HpySE526I	ACGT	1 cut(s)	1370
Hsp92II	CATG	8 cut(s)	367, 458, 802, 897, 1011, 1040, 1255, 1294
Kzo9I	GATC	3 cut(s)	100, 164, 779
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	4 cut(s)	456, 864, 962, 1001
LweI	GCATC	3 cut(s)	346, 504, 781
MaeI	CTAG	4 cut(s)	54, 1022, 1229, 1311
MaeII	ACGT	1 cut(s)	1370
MaeIII	GTNAC	4 cut(s)	118, 127, 285, 1133
MalI	GATC	3 cut(s)	102, 166, 781
MboI	GATC	3 cut(s)	100, 164, 779
MboII	GAAGA	4 cut(s)	668, 758, 1186, 1235
MflI	RGATCY	1 cut(s)	779
MhlI	GDGCHC	2 cut(s)	306, 335
MlsI	TGGCCA	1 cut(s)	691
MluCI	AATT	2 cut(s)	83, 498
MluNI	TGGCCA	1 cut(s)	691
MlyI	GAGTC	4 cut(s)	27, 120, 485, 1097
MmeI	TCCRAC	4 cut(s)	633, 807, 1052, 1365
Mox20I	TGGCCA	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	691
MseI	TTAA	5 cut(s)	69, 809, 1185, 1377, 1384
Msp20I	TGGCCA	1 cut(s)	691
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	1291
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	3 cut(s)	330, 1040, 1316
NdeII	GATC	3 cut(s)	100, 164, 779
NlaIII	CATG	8 cut(s)	367, 458, 802, 897, 1011, 1040, 1255, 1294
NlaIV	GGNNCC	2 cut(s)	332, 629
NmuCI	GTSAC	4 cut(s)	118, 127, 285, 1133
PagI	TCATGA	1 cut(s)	1036
PctI	GAATGC	1 cut(s)	1291
PfeI	GAWTC	1 cut(s)	941
PflMI	CCANNNNNTGG	1 cut(s)	1296
PkrI	GCNGC	4 cut(s)	471, 854, 952, 1016
PleI	GAGTC	4 cut(s)	26, 119, 485, 1096
PpsI	GAGTC	4 cut(s)	26, 119, 485, 1096
PpuMI	RGGWCCY	1 cut(s)	628
Psp124BI	GAGCTC	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	1370
Psp5II	RGGWCCY	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	332, 629
PspPI	GGNCC	4 cut(s)	535, 628, 699, 707
PspPPI	RGGWCCY	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	986
RsaI	GTAC	2 cut(s)	158, 1157
RsaNI	GTAC	2 cut(s)	157, 1156
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	5 cut(s)	69, 809, 1185, 1377, 1384
SatI	GCNGC	4 cut(s)	470, 853, 951, 1015
Sau3AI	GATC	3 cut(s)	100, 164, 779
Sau96I	GGNCC	4 cut(s)	535, 628, 699, 707
SchI	GAGTC	4 cut(s)	27, 120, 485, 1097
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	306, 335
SfaNI	GCATC	3 cut(s)	346, 504, 781
SinI	GGWCC	4 cut(s)	535, 628, 699, 707
SmlI	CTYRAG	3 cut(s)	182, 524, 872
SmoI	CTYRAG	3 cut(s)	182, 524, 872
Sse9I	AATT	2 cut(s)	83, 498
SsiI	CCGC	1 cut(s)	1332
SspMI	CTAG	4 cut(s)	54, 1022, 1229, 1311
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	35, 610
TaiI	ACGT	1 cut(s)	1373
TaqI	TCGA	1 cut(s)	975
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	2 cut(s)	83, 498
TatI	WGTACW	2 cut(s)	156, 1155
TfiI	GAWTC	1 cut(s)	941
Tru1I	TTAA	5 cut(s)	69, 809, 1185, 1377, 1384
Tru9I	TTAA	5 cut(s)	69, 809, 1185, 1377, 1384
TscAI	CASTG	7 cut(s)	38, 129, 181, 201, 613, 699, 1326
TseFI	GTSAC	4 cut(s)	118, 127, 285, 1133
TseI	GCWGC	4 cut(s)	469, 852, 950, 1014
Tsp45I	GTSAC	4 cut(s)	118, 127, 285, 1133
TspDTI	ATGAA	7 cut(s)	352, 815, 996, 1045, 1053, 1307, 1351
TspRI	CASTG	7 cut(s)	38, 129, 181, 201, 613, 699, 1326
Van91I	CCANNNNNTGG	1 cut(s)	1296
VpaK11BI	GGWCC	4 cut(s)	535, 628, 699, 707
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	4 cut(s)	54, 1022, 1229, 1311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.