transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900 |
| fragaria_vesca | FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831 |
| malus_domestica | MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1 |
| prunus_persica | Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1 |
| pyrus_communis | pycom08g01400 pycom08g01410 pycom15g01300 |
| rosa_chinensis | RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431 |
| rosa_laevigata | RLG00000011172 RLG00000013914 |
| rosa_multiflora | Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165790 Rroxscaffold_7G00199840 |
| rosa_rugosa | Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200 |
| rosa_samantha | Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300 |
| rosa_wichuraiana | Rw6G013910 Rw6G036950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 274 |
| AccII | CGCG | 2 cut(s) | 155, 316 |
| AciI | CCGC | 3 cut(s) | 731, 1013, 1112 |
| AclI | AACGTT | 1 cut(s) | 1540 |
| AclWI | GGATC | 2 cut(s) | 238, 1265 |
| AcoI | YGGCCR | 1 cut(s) | 1130 |
| AcsI | RAATTY | 6 cut(s) | 135, 286, 658, 796, 1168, 1190 |
| AcuI | CTGAAG | 2 cut(s) | 777, 1030 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 274, 617, 1121, 1329 |
| AgsI | TTSAA | 9 cut(s) | 47, 124, 820, 1158, 1173, 1462, 1475, 1546, 1648 |
| AjnI | CCWGG | 3 cut(s) | 485, 1120, 1132 |
| Alw26I | GTCTC | 5 cut(s) | 330, 506, 597, 1060, 1442 |
| AlwI | GGATC | 2 cut(s) | 238, 1265 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 91, 1741 |
| Ama87I | CYCGRG | 2 cut(s) | 499, 1772 |
| AoxI | GGCC | 2 cut(s) | 257, 1130 |
| ApoI | RAATTY | 6 cut(s) | 135, 286, 658, 796, 1168, 1190 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 262, 294, 1760 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 64 |
| AspA2I | CCTAGG | 1 cut(s) | 295 |
| AspLEI | GCGC | 3 cut(s) | 157, 1030, 1341 |
| AspS9I | GGNCC | 4 cut(s) | 100, 302, 634, 1534 |
| AsuC2I | CCSGG | 2 cut(s) | 248, 966 |
| AsuHPI | GGTGA | 9 cut(s) | 17, 468, 521, 755, 1092, 1103, 1110, 1214, 1623 |
| AvaI | CYCGRG | 2 cut(s) | 499, 1772 |
| AvaII | GGWCC | 4 cut(s) | 100, 302, 634, 1534 |
| AvrII | CCTAGG | 1 cut(s) | 295 |
| BanII | GRGCYC | 1 cut(s) | 371 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1325, 1357 |
| BbvCI | CCTCAGC | 1 cut(s) | 1734 |
| BccI | CCATC | 4 cut(s) | 379, 400, 481, 661 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 710, 744 |
| BciT130I | CCWGG | 3 cut(s) | 487, 1122, 1134 |
| BciVI | GTATCC | 1 cut(s) | 186 |
| BcnI | CCSGG | 2 cut(s) | 248, 966 |
| BcoDI | GTCTC | 5 cut(s) | 330, 506, 597, 1060, 1442 |
| BfaI | CTAG | 1 cut(s) | 296 |
| BfmI | CTRYAG | 2 cut(s) | 1376, 1742 |
| BfuI | GTATCC | 1 cut(s) | 186 |
| BglII | AGATCT | 1 cut(s) | 1561 |
| BlnI | CCTAGG | 1 cut(s) | 295 |
| Bme1390I | CCNGG | 5 cut(s) | 248, 487, 966, 1122, 1134 |
| Bme18I | GGWCC | 4 cut(s) | 100, 302, 634, 1534 |
| BmeT110I | CYCGRG | 2 cut(s) | 499, 1772 |
| BmgT120I | GGNCC | 4 cut(s) | 100, 302, 634, 1534 |
| BmiI | GGNNCC | 2 cut(s) | 304, 1613 |
| BmrFI | CCNGG | 5 cut(s) | 248, 487, 966, 1122, 1134 |
| BmrI | ACTGGG | 1 cut(s) | 177 |
| BmsI | GCATC | 6 cut(s) | 24, 436, 570, 802, 1326, 1495 |
| BmuI | ACTGGG | 1 cut(s) | 177 |
| BpmI | CTGGAG | 1 cut(s) | 1604 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1734 |
| BpuMI | CCSGG | 2 cut(s) | 248, 966 |
| BsaI | GGTCTC | 1 cut(s) | 1442 |
| BsaJI | CCNNGG | 4 cut(s) | 295, 414, 486, 1059 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 274, 617, 1121, 1329 |
| Bse1I | ACTGG | 2 cut(s) | 172, 702 |
| Bse3DI | GCAATG | 2 cut(s) | 603, 1269 |
| BseBI | CCWGG | 3 cut(s) | 487, 1122, 1134 |
| BseDI | CCNNGG | 4 cut(s) | 295, 414, 486, 1059 |
| BseGI | GGATG | 6 cut(s) | 216, 392, 430, 451, 672, 778 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 274, 617, 1121, 1329 |
| BseMI | GCAATG | 2 cut(s) | 603, 1269 |
| BseMII | CTCAG | 7 cut(s) | 254, 695, 1453, 1513, 1649, 1655, 1748 |
| BseNI | ACTGG | 2 cut(s) | 172, 702 |
| BseYI | CCCAGC | 1 cut(s) | 1148 |
| BsgI | GTGCAG | 2 cut(s) | 672, 1386 |
| Bsh1236I | CGCG | 2 cut(s) | 155, 316 |
| BshFI | GGCC | 2 cut(s) | 259, 1132 |
| BsiHKCI | CYCGRG | 2 cut(s) | 499, 1772 |
| BsiSI | CCGG | 2 cut(s) | 248, 965 |
| BslFI | GGGAC | 4 cut(s) | 751, 844, 904, 981 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 274, 617, 1121, 1329 |
| BsmAI | GTCTC | 5 cut(s) | 330, 506, 597, 1060, 1442 |
| BsmFI | GGGAC | 4 cut(s) | 751, 844, 904, 981 |
| BsmI | GAATGC | 1 cut(s) | 457 |
| BsnI | GGCC | 2 cut(s) | 259, 1132 |
| Bso31I | GGTCTC | 1 cut(s) | 1442 |
| BsoBI | CYCGRG | 2 cut(s) | 499, 1772 |
| Bsp1286I | GDGCHC | 1 cut(s) | 371 |
| Bsp143I | GATC | 5 cut(s) | 185, 243, 317, 1270, 1561 |
| Bsp19I | CCATGG | 1 cut(s) | 1059 |
| Bsp68I | TCGCGA | 1 cut(s) | 316 |
| BspACI | CCGC | 3 cut(s) | 731, 1013, 1112 |
| BspANI | GGCC | 2 cut(s) | 259, 1132 |
| BspCNI | CTCAG | 8 cut(s) | 4, 253, 694, 1452, 1512, 1648, 1654, 1747 |
| BspFNI | CGCG | 2 cut(s) | 155, 316 |
| BspLI | GGNNCC | 2 cut(s) | 304, 1613 |
| BspMAI | CTGCAG | 1 cut(s) | 1746 |
| BspPI | GGATC | 2 cut(s) | 238, 1265 |
| BspTNI | GGTCTC | 1 cut(s) | 1442 |
| BsrDI | GCAATG | 2 cut(s) | 603, 1269 |
| BsrI | ACTGG | 2 cut(s) | 172, 702 |
| BssECI | CCNNGG | 4 cut(s) | 295, 414, 486, 1059 |
| BssMI | GATC | 5 cut(s) | 185, 243, 317, 1270, 1561 |
| BssT1I | CCWWGG | 2 cut(s) | 295, 1059 |
| Bst2UI | CCWGG | 3 cut(s) | 487, 1122, 1134 |
| Bst4CI | ACNGT | 5 cut(s) | 591, 875, 1067, 1202, 1398 |
| Bst6I | CTCTTC | 1 cut(s) | 829 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 463 |
| BstC8I | GCNNGC | 6 cut(s) | 678, 718, 956, 1251, 1281, 1551 |
| BstDEI | CTNAG | 9 cut(s) | 12, 240, 681, 894, 1439, 1499, 1635, 1641, 1734 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 1059 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1119 |
| BstF5I | GGATG | 6 cut(s) | 216, 392, 430, 451, 672, 778 |
| BstFNI | CGCG | 2 cut(s) | 155, 316 |
| BstHHI | GCGC | 3 cut(s) | 157, 1030, 1341 |
| BstKTI | GATC | 5 cut(s) | 188, 246, 320, 1273, 1564 |
| BstMAI | GTCTC | 5 cut(s) | 330, 506, 597, 1060, 1442 |
| BstMBI | GATC | 5 cut(s) | 185, 243, 317, 1270, 1561 |
| BstNI | CCWGG | 3 cut(s) | 487, 1122, 1134 |
| BstNSI | RCATGY | 1 cut(s) | 958 |
| BstSCI | CCNGG | 5 cut(s) | 246, 485, 964, 1120, 1132 |
| BstSFI | CTRYAG | 2 cut(s) | 1376, 1742 |
| BstUI | CGCG | 2 cut(s) | 155, 316 |
| BstX2I | RGATCY | 2 cut(s) | 243, 1561 |
| BstYI | RGATCY | 2 cut(s) | 243, 1561 |
| BsuI | GTATCC | 1 cut(s) | 186 |
| BsuRI | GGCC | 2 cut(s) | 259, 1132 |
| BtgI | CCRYGG | 2 cut(s) | 414, 1059 |
| BtgZI | GCGATG | 1 cut(s) | 357 |
| BtsCI | GGATG | 6 cut(s) | 216, 392, 430, 451, 672, 778 |
| BtsI | GCAGTG | 3 cut(s) | 353, 919, 940 |
| BtsIMutI | CAGTG | 6 cut(s) | 9, 353, 919, 940, 1216, 1394 |
| BtuMI | TCGCGA | 1 cut(s) | 316 |
| Cac8I | GCNNGC | 6 cut(s) | 678, 718, 956, 1251, 1281, 1551 |
| CaiI | CAGNNNCTG | 2 cut(s) | 91, 1741 |
| CfoI | GCGC | 3 cut(s) | 157, 1030, 1341 |
| Cfr13I | GGNCC | 4 cut(s) | 100, 302, 634, 1534 |
| CviAII | CATG | 4 cut(s) | 403, 955, 1060, 1594 |
| DdeI | CTNAG | 9 cut(s) | 12, 240, 681, 894, 1439, 1499, 1635, 1641, 1734 |
| DpnI | GATC | 5 cut(s) | 187, 245, 319, 1272, 1563 |
| DpnII | GATC | 5 cut(s) | 185, 243, 317, 1270, 1561 |
| EaeI | YGGCCR | 1 cut(s) | 1130 |
| Eam1104I | CTCTTC | 1 cut(s) | 829 |
| EarI | CTCTTC | 1 cut(s) | 829 |
| Eco130I | CCWWGG | 2 cut(s) | 295, 1059 |
| Eco24I | GRGCYC | 1 cut(s) | 371 |
| Eco31I | GGTCTC | 1 cut(s) | 1442 |
| Eco47I | GGWCC | 4 cut(s) | 100, 302, 634, 1534 |
| Eco57I | CTGAAG | 2 cut(s) | 777, 1030 |
| Eco88I | CYCGRG | 2 cut(s) | 499, 1772 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1119 |
| EcoO109I | RGGNCCY | 1 cut(s) | 302 |
| EcoRI | GAATTC | 1 cut(s) | 1168 |
| EcoRII | CCWGG | 3 cut(s) | 485, 1120, 1132 |
| EcoT14I | CCWWGG | 2 cut(s) | 295, 1059 |
| EcoT22I | ATGCAT | 1 cut(s) | 960 |
| EcoT38I | GRGCYC | 1 cut(s) | 371 |
| ErhI | CCWWGG | 2 cut(s) | 295, 1059 |
| FaeI | CATG | 4 cut(s) | 406, 958, 1063, 1597 |
| FaqI | GGGAC | 4 cut(s) | 751, 844, 904, 981 |
| FatI | CATG | 4 cut(s) | 402, 954, 1059, 1593 |
| FauI | CCCGC | 1 cut(s) | 1006 |
| FokI | GGATG | 6 cut(s) | 203, 379, 437, 458, 679, 785 |
| FriOI | GRGCYC | 1 cut(s) | 371 |
| FspBI | CTAG | 1 cut(s) | 296 |
| GlaI | GCGC | 3 cut(s) | 156, 1029, 1340 |
| GsaI | CCCAGC | 1 cut(s) | 1152 |
| GsuI | CTGGAG | 1 cut(s) | 1604 |
| HaeIII | GGCC | 2 cut(s) | 259, 1132 |
| HapII | CCGG | 2 cut(s) | 248, 965 |
| HhaI | GCGC | 3 cut(s) | 157, 1030, 1341 |
| Hin1II | CATG | 4 cut(s) | 406, 958, 1063, 1597 |
| Hin6I | GCGC | 3 cut(s) | 155, 1028, 1339 |
| HinP1I | GCGC | 3 cut(s) | 155, 1028, 1339 |
| HindIII | AAGCTT | 2 cut(s) | 1247, 1547 |
| HpaII | CCGG | 2 cut(s) | 248, 965 |
| HphI | GGTGA | 9 cut(s) | 17, 468, 521, 755, 1092, 1103, 1110, 1214, 1623 |
| Hpy188III | TCNNGA | 4 cut(s) | 315, 383, 499, 860 |
| HpyAV | CCTTC | 7 cut(s) | 346, 728, 752, 989, 1125, 1481, 1593 |
| HpyCH4III | ACNGT | 5 cut(s) | 591, 875, 1067, 1202, 1398 |
| HpyCH4IV | ACGT | 1 cut(s) | 1540 |
| HpyF3I | CTNAG | 9 cut(s) | 12, 240, 681, 894, 1439, 1499, 1635, 1641, 1734 |
| HpySE526I | ACGT | 1 cut(s) | 1540 |
| Hsp92II | CATG | 4 cut(s) | 406, 958, 1063, 1597 |
| HspAI | GCGC | 3 cut(s) | 155, 1028, 1339 |
| Kzo9I | GATC | 5 cut(s) | 185, 243, 317, 1270, 1561 |
| LmnI | GCTCC | 2 cut(s) | 613, 1623 |
| LweI | GCATC | 6 cut(s) | 24, 436, 570, 802, 1326, 1495 |
| MaeI | CTAG | 1 cut(s) | 296 |
| MaeII | ACGT | 1 cut(s) | 1540 |
| MaeIII | GTNAC | 5 cut(s) | 5, 905, 1098, 1442, 1629 |
| MalI | GATC | 5 cut(s) | 187, 245, 319, 1272, 1563 |
| MboI | GATC | 5 cut(s) | 185, 243, 317, 1270, 1561 |
| MboII | GAAGA | 5 cut(s) | 42, 57, 816, 1237, 1345 |
| MfeI | CAATTG | 1 cut(s) | 1158 |
| MflI | RGATCY | 2 cut(s) | 243, 1561 |
| MhlI | GDGCHC | 1 cut(s) | 371 |
| MlyI | GAGTC | 5 cut(s) | 419, 1106, 1366, 1633, 1784 |
| MmeI | TCCRAC | 3 cut(s) | 387, 1335, 1561 |
| Mph1103I | ATGCAT | 1 cut(s) | 960 |
| MroXI | GAANNNNTTC | 1 cut(s) | 64 |
| MseI | TTAA | 6 cut(s) | 264, 672, 690, 939, 1002, 1599 |
| MslI | CAYNNNNRTG | 1 cut(s) | 401 |
| MspA1I | CMGCKG | 1 cut(s) | 1313 |
| MspI | CCGG | 2 cut(s) | 248, 965 |
| MspR9I | CCNGG | 5 cut(s) | 248, 487, 966, 1122, 1134 |
| MunI | CAATTG | 1 cut(s) | 1158 |
| Mva1269I | GAATGC | 1 cut(s) | 457 |
| MvaI | CCWGG | 3 cut(s) | 487, 1122, 1134 |
| MvnI | CGCG | 2 cut(s) | 155, 316 |
| NciI | CCSGG | 2 cut(s) | 248, 966 |
| NcoI | CCATGG | 1 cut(s) | 1059 |
| NdeII | GATC | 5 cut(s) | 185, 243, 317, 1270, 1561 |
| NlaIII | CATG | 4 cut(s) | 406, 958, 1063, 1597 |
| NlaIV | GGNNCC | 2 cut(s) | 304, 1613 |
| NmeAIII | GCCGAG | 2 cut(s) | 1108, 1279 |
| NmuCI | GTSAC | 4 cut(s) | 5, 905, 1098, 1629 |
| NruI | TCGCGA | 1 cut(s) | 316 |
| NsiI | ATGCAT | 1 cut(s) | 960 |
| NspI | RCATGY | 1 cut(s) | 958 |
| PaeI | GCATGC | 1 cut(s) | 958 |
| PaeR7I | CTCGAG | 1 cut(s) | 499 |
| PctI | GAATGC | 1 cut(s) | 457 |
| PdmI | GAANNNNTTC | 1 cut(s) | 64 |
| PfeI | GAWTC | 6 cut(s) | 350, 386, 698, 856, 1427, 1574 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 274 |
| PleI | GAGTC | 5 cut(s) | 418, 1105, 1366, 1633, 1783 |
| PpsI | GAGTC | 5 cut(s) | 418, 1105, 1366, 1633, 1783 |
| PpuMI | RGGWCCY | 1 cut(s) | 302 |
| Psp1406I | AACGTT | 1 cut(s) | 1540 |
| Psp5II | RGGWCCY | 1 cut(s) | 302 |
| Psp6I | CCWGG | 3 cut(s) | 485, 1120, 1132 |
| PspFI | CCCAGC | 1 cut(s) | 1148 |
| PspGI | CCWGG | 3 cut(s) | 485, 1120, 1132 |
| PspN4I | GGNNCC | 2 cut(s) | 304, 1613 |
| PspPI | GGNCC | 4 cut(s) | 100, 302, 634, 1534 |
| PspPPI | RGGWCCY | 1 cut(s) | 302 |
| PstI | CTGCAG | 1 cut(s) | 1746 |
| PstNI | CAGNNNCTG | 2 cut(s) | 91, 1741 |
| PsuI | RGATCY | 2 cut(s) | 243, 1561 |
| PvuII | CAGCTG | 1 cut(s) | 1313 |
| RruI | TCGCGA | 1 cut(s) | 316 |
| RseI | CAYNNNNRTG | 1 cut(s) | 401 |
| SaqAI | TTAA | 6 cut(s) | 264, 672, 690, 939, 1002, 1599 |
| Sau3AI | GATC | 5 cut(s) | 185, 243, 317, 1270, 1561 |
| Sau96I | GGNCC | 4 cut(s) | 100, 302, 634, 1534 |
| SchI | GAGTC | 5 cut(s) | 419, 1106, 1366, 1633, 1784 |
| ScrFI | CCNGG | 5 cut(s) | 248, 487, 966, 1122, 1134 |
| SduI | GDGCHC | 1 cut(s) | 371 |
| SfaNI | GCATC | 6 cut(s) | 24, 436, 570, 802, 1326, 1495 |
| SfcI | CTRYAG | 2 cut(s) | 1376, 1742 |
| Sfr274I | CTCGAG | 1 cut(s) | 499 |
| SinI | GGWCC | 4 cut(s) | 100, 302, 634, 1534 |
| SlaI | CTCGAG | 1 cut(s) | 499 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 401 |
| SmlI | CTYRAG | 1 cut(s) | 499 |
| SmoI | CTYRAG | 1 cut(s) | 499 |
| SphI | GCATGC | 1 cut(s) | 958 |
| SsiI | CCGC | 3 cut(s) | 731, 1013, 1112 |
| SspI | AATATT | 1 cut(s) | 976 |
| SspMI | CTAG | 1 cut(s) | 296 |
| StyD4I | CCNGG | 5 cut(s) | 246, 485, 964, 1120, 1132 |
| StyI | CCWWGG | 2 cut(s) | 295, 1059 |
| TaaI | ACNGT | 5 cut(s) | 591, 875, 1067, 1202, 1398 |
| TaiI | ACGT | 1 cut(s) | 1543 |
| TaqI | TCGA | 2 cut(s) | 500, 1039 |
| TaqII | GACCGA | 1 cut(s) | 1283 |
| TfiI | GAWTC | 6 cut(s) | 350, 386, 698, 856, 1427, 1574 |
| Tru1I | TTAA | 6 cut(s) | 264, 672, 690, 939, 1002, 1599 |
| Tru9I | TTAA | 6 cut(s) | 264, 672, 690, 939, 1002, 1599 |
| TscAI | CASTG | 6 cut(s) | 16, 360, 919, 940, 1216, 1401 |
| TseFI | GTSAC | 4 cut(s) | 5, 905, 1098, 1629 |
| Tsp45I | GTSAC | 4 cut(s) | 5, 905, 1098, 1629 |
| TspDTI | ATGAA | 7 cut(s) | 57, 809, 936, 957, 1238, 1257, 1530 |
| TspGWI | ACGGA | 2 cut(s) | 403, 1345 |
| TspRI | CASTG | 6 cut(s) | 16, 360, 919, 940, 1216, 1401 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 274 |
| VpaK11BI | GGWCC | 4 cut(s) | 100, 302, 634, 1534 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1119 |
| XapI | RAATTY | 6 cut(s) | 135, 286, 658, 796, 1168, 1190 |
| XceI | RCATGY | 1 cut(s) | 958 |
| XhoI | CTCGAG | 1 cut(s) | 499 |
| XmaJI | CCTAGG | 1 cut(s) | 295 |
| XmnI | GAANNNNTTC | 1 cut(s) | 64 |
| XspI | CTAG | 1 cut(s) | 296 |
| Zsp2I | ATGCAT | 1 cut(s) | 960 |