RchiOBHm_Chr6g0268361
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
25223841 .. 25228318
4478 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24072

Sequence Viewer

Length: 1788 bp
ATGGGTGACACTGAGGAAGCTAATAGTGATATGATGCAAAGGCTTCAATCTTCGTTTGGAACATCTTCATCATCAATTCTGAAACAGCCTCTGTCTATGGACCAACTGAACATACCCCAATTCAACACTTCACAAATTCGCTCACGCCATTTCGCGCAGAGCTTTACTGGGGATAGCAGCAAAAGATCGGGGATACCACCCTCACACCCAAACCACATCCCACCACTTTCGCCTTATTCTCAGATCCCGGTGGCAAGGCCGATTAACCAGACAATGGGTTCGCAGAATTTTAGCCTAGGAGGACCCACCCATTCGCGATCATTGTCTCAACCAGCCTTCTTTTCCCTTGATTCACTGCCCCCATTGAGCCCATCGCCCTATCGTGAATCCCCATCCACCTCCATGTCGGAGTCCGTGGCTGTGGATGTGTCAATGGAGGATAGGGATGCAAGTTCGCATTCCTTGCTGCCCCCATCACCTTTTTCCAGGGGTAATTTCTCGAGGGTCGGTGAGACTTTGCCCCCTCGCAAAGCTCATAGGAGGTCTAATAGTGATATACCATTTGGGTTTTCTACTATGATGCAACAACAGTCTCTACCCCCCATTGCTCCCGTGAGGGGTTCGGGTGGTTTGGACCTGTCAATGTCTGGTGCAGAAAATTCAGGGATGGTTAAGCCAGCTCAGTTGGTTAAAAAGGAATCCAGTTGGGAAAGAGCTGGCGATAACAATGCGGAAGGGACGGGTGAGAGGAAGTCTGAAGGGGAAGTAGTGGATGATTTGTTTTCTGCATATATGAATTTGGATAGCATTGATGCTTTGAACTCTTCGGGGACTGATGACAAGAATGGTAATGAGAATCGTGAGGATATGGACAGTAGTAGAGCAAGTGGGACTAAGACAAATTGTGACAGCAGTGATAATGAAGTGGAAAGCAGTGTTAATGAAAGTGGAGGCATGCATAGACCGGGACTGAATATTATGACTGATATGAGGGAAGGGATTAAAAGGAGTGCGGGGGGAGATATTGCGCCGACCACTCGACACTTCAGAAGTGTCTCCATGGACAGTTTTATGGGTAAGCTGCAATTTGGTGATGAGTCACCTAAACTACCGCCTTCACCAGGAACTCGGCCAGGACAACTTTCCCCCAGCAATTCAATTGATACGAATTCAAATGCCTTTAGCTTGGAATTTGGAAACGGTGAGTTCAGTGGGGCTGAAATGAAGAAAATTATGGCTAATGAAAAGCTTGCCGAGATTGCAATGACCGATCCAAAGCGTGCAAAAAGGATATTGGCAAATCGTCAATCAGCTGCCCGTTCCAAAGAACGGAAGATGCGCTACATTTCAGAGTTGGAACACAAGGTTCAGACTCTACAGACAGAAGCAACAACACTGTCTGCACAGCTTACACTATTACAGAGAGATTCTGTTGGTCTCAGTAACCAGAATAATGAGTTGAAGTTTCGCCTTCAAGCTATGGAACAACAGGCTCAACTCAGAGATGCTCTAAATGAAGCCCTAACATCAGAGGTCCAACGTTTGAAGCTTGCTACAACAGATCTGAATGGGGATTCTCGCCCTTCCAAGAGCATGATTAACGCCCAGAGGTTCCAGCTCCAGCAGCAGTCACCTCAGACTCAGTTCAACCTACATCAGCAGCAACAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAGACACCTCAGCAACTGCAGCAGAATGGCACAACAACCTCAAAGCCCGAGTCAAATCAATAG

Protein Analysis

595

Amino Acids

65.44

Weight (kDa)

6.13

Isoelectric Point (pI)

67.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 423 - 475 9.5e-08 Basic region leucine zipper
bZIP_1 PF00170 426 - 480 1.3e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AccII CGCG 2 cut(s) 155, 316
AciI CCGC 3 cut(s) 731, 1013, 1112
AclI AACGTT 1 cut(s) 1540
AclWI GGATC 2 cut(s) 238, 1265
AcoI YGGCCR 1 cut(s) 1130
AcsI RAATTY 6 cut(s) 135, 286, 658, 796, 1168, 1190
AcuI CTGAAG 2 cut(s) 777, 1030
AfiI CCNNNNNNNGG 4 cut(s) 274, 617, 1121, 1329
AgsI TTSAA 9 cut(s) 47, 124, 820, 1158, 1173, 1462, 1475, 1546, 1648
AjnI CCWGG 3 cut(s) 485, 1120, 1132
Alw26I GTCTC 5 cut(s) 330, 506, 597, 1060, 1442
AlwI GGATC 2 cut(s) 238, 1265
AlwNI CAGNNNCTG 2 cut(s) 91, 1741
Ama87I CYCGRG 2 cut(s) 499, 1772
AoxI GGCC 2 cut(s) 257, 1130
ApoI RAATTY 6 cut(s) 135, 286, 658, 796, 1168, 1190
ArsI GACNNNNNNTTYG 3 cut(s) 262, 294, 1760
Asp700I GAANNNNTTC 1 cut(s) 64
AspA2I CCTAGG 1 cut(s) 295
AspLEI GCGC 3 cut(s) 157, 1030, 1341
AspS9I GGNCC 4 cut(s) 100, 302, 634, 1534
AsuC2I CCSGG 2 cut(s) 248, 966
AsuHPI GGTGA 9 cut(s) 17, 468, 521, 755, 1092, 1103, 1110, 1214, 1623
AvaI CYCGRG 2 cut(s) 499, 1772
AvaII GGWCC 4 cut(s) 100, 302, 634, 1534
AvrII CCTAGG 1 cut(s) 295
BanII GRGCYC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 1325, 1357
BbvCI CCTCAGC 1 cut(s) 1734
BccI CCATC 4 cut(s) 379, 400, 481, 661
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 3 cut(s) 487, 1122, 1134
BciVI GTATCC 1 cut(s) 186
BcnI CCSGG 2 cut(s) 248, 966
BcoDI GTCTC 5 cut(s) 330, 506, 597, 1060, 1442
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 2 cut(s) 1376, 1742
BfuI GTATCC 1 cut(s) 186
BglII AGATCT 1 cut(s) 1561
BlnI CCTAGG 1 cut(s) 295
Bme1390I CCNGG 5 cut(s) 248, 487, 966, 1122, 1134
Bme18I GGWCC 4 cut(s) 100, 302, 634, 1534
BmeT110I CYCGRG 2 cut(s) 499, 1772
BmgT120I GGNCC 4 cut(s) 100, 302, 634, 1534
BmiI GGNNCC 2 cut(s) 304, 1613
BmrFI CCNGG 5 cut(s) 248, 487, 966, 1122, 1134
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 6 cut(s) 24, 436, 570, 802, 1326, 1495
BmuI ACTGGG 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 1604
Bpu10I CCTNAGC 1 cut(s) 1734
BpuMI CCSGG 2 cut(s) 248, 966
BsaI GGTCTC 1 cut(s) 1442
BsaJI CCNNGG 4 cut(s) 295, 414, 486, 1059
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 617, 1121, 1329
Bse1I ACTGG 2 cut(s) 172, 702
Bse3DI GCAATG 2 cut(s) 603, 1269
BseBI CCWGG 3 cut(s) 487, 1122, 1134
BseDI CCNNGG 4 cut(s) 295, 414, 486, 1059
BseGI GGATG 6 cut(s) 216, 392, 430, 451, 672, 778
BseLI CCNNNNNNNGG 4 cut(s) 274, 617, 1121, 1329
BseMI GCAATG 2 cut(s) 603, 1269
BseMII CTCAG 7 cut(s) 254, 695, 1453, 1513, 1649, 1655, 1748
BseNI ACTGG 2 cut(s) 172, 702
BseYI CCCAGC 1 cut(s) 1148
BsgI GTGCAG 2 cut(s) 672, 1386
Bsh1236I CGCG 2 cut(s) 155, 316
BshFI GGCC 2 cut(s) 259, 1132
BsiHKCI CYCGRG 2 cut(s) 499, 1772
BsiSI CCGG 2 cut(s) 248, 965
BslFI GGGAC 4 cut(s) 751, 844, 904, 981
BslI CCNNNNNNNGG 4 cut(s) 274, 617, 1121, 1329
BsmAI GTCTC 5 cut(s) 330, 506, 597, 1060, 1442
BsmFI GGGAC 4 cut(s) 751, 844, 904, 981
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 259, 1132
Bso31I GGTCTC 1 cut(s) 1442
BsoBI CYCGRG 2 cut(s) 499, 1772
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 5 cut(s) 185, 243, 317, 1270, 1561
Bsp19I CCATGG 1 cut(s) 1059
Bsp68I TCGCGA 1 cut(s) 316
BspACI CCGC 3 cut(s) 731, 1013, 1112
BspANI GGCC 2 cut(s) 259, 1132
BspCNI CTCAG 8 cut(s) 4, 253, 694, 1452, 1512, 1648, 1654, 1747
BspFNI CGCG 2 cut(s) 155, 316
BspLI GGNNCC 2 cut(s) 304, 1613
BspMAI CTGCAG 1 cut(s) 1746
BspPI GGATC 2 cut(s) 238, 1265
BspTNI GGTCTC 1 cut(s) 1442
BsrDI GCAATG 2 cut(s) 603, 1269
BsrI ACTGG 2 cut(s) 172, 702
BssECI CCNNGG 4 cut(s) 295, 414, 486, 1059
BssMI GATC 5 cut(s) 185, 243, 317, 1270, 1561
BssT1I CCWWGG 2 cut(s) 295, 1059
Bst2UI CCWGG 3 cut(s) 487, 1122, 1134
Bst4CI ACNGT 5 cut(s) 591, 875, 1067, 1202, 1398
Bst6I CTCTTC 1 cut(s) 829
BstAPI GCANNNNNTGC 1 cut(s) 463
BstC8I GCNNGC 6 cut(s) 678, 718, 956, 1251, 1281, 1551
BstDEI CTNAG 9 cut(s) 12, 240, 681, 894, 1439, 1499, 1635, 1641, 1734
BstDSI CCRYGG 2 cut(s) 414, 1059
BstENI CCTNNNNNAGG 1 cut(s) 1119
BstF5I GGATG 6 cut(s) 216, 392, 430, 451, 672, 778
BstFNI CGCG 2 cut(s) 155, 316
BstHHI GCGC 3 cut(s) 157, 1030, 1341
BstKTI GATC 5 cut(s) 188, 246, 320, 1273, 1564
BstMAI GTCTC 5 cut(s) 330, 506, 597, 1060, 1442
BstMBI GATC 5 cut(s) 185, 243, 317, 1270, 1561
BstNI CCWGG 3 cut(s) 487, 1122, 1134
BstNSI RCATGY 1 cut(s) 958
BstSCI CCNGG 5 cut(s) 246, 485, 964, 1120, 1132
BstSFI CTRYAG 2 cut(s) 1376, 1742
BstUI CGCG 2 cut(s) 155, 316
BstX2I RGATCY 2 cut(s) 243, 1561
BstYI RGATCY 2 cut(s) 243, 1561
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 259, 1132
BtgI CCRYGG 2 cut(s) 414, 1059
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 6 cut(s) 216, 392, 430, 451, 672, 778
BtsI GCAGTG 3 cut(s) 353, 919, 940
BtsIMutI CAGTG 6 cut(s) 9, 353, 919, 940, 1216, 1394
BtuMI TCGCGA 1 cut(s) 316
Cac8I GCNNGC 6 cut(s) 678, 718, 956, 1251, 1281, 1551
CaiI CAGNNNCTG 2 cut(s) 91, 1741
CfoI GCGC 3 cut(s) 157, 1030, 1341
Cfr13I GGNCC 4 cut(s) 100, 302, 634, 1534
CviAII CATG 4 cut(s) 403, 955, 1060, 1594
DdeI CTNAG 9 cut(s) 12, 240, 681, 894, 1439, 1499, 1635, 1641, 1734
DpnI GATC 5 cut(s) 187, 245, 319, 1272, 1563
DpnII GATC 5 cut(s) 185, 243, 317, 1270, 1561
EaeI YGGCCR 1 cut(s) 1130
Eam1104I CTCTTC 1 cut(s) 829
EarI CTCTTC 1 cut(s) 829
Eco130I CCWWGG 2 cut(s) 295, 1059
Eco24I GRGCYC 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 1442
Eco47I GGWCC 4 cut(s) 100, 302, 634, 1534
Eco57I CTGAAG 2 cut(s) 777, 1030
Eco88I CYCGRG 2 cut(s) 499, 1772
EcoNI CCTNNNNNAGG 1 cut(s) 1119
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 1168
EcoRII CCWGG 3 cut(s) 485, 1120, 1132
EcoT14I CCWWGG 2 cut(s) 295, 1059
EcoT22I ATGCAT 1 cut(s) 960
EcoT38I GRGCYC 1 cut(s) 371
ErhI CCWWGG 2 cut(s) 295, 1059
FaeI CATG 4 cut(s) 406, 958, 1063, 1597
FaqI GGGAC 4 cut(s) 751, 844, 904, 981
FatI CATG 4 cut(s) 402, 954, 1059, 1593
FauI CCCGC 1 cut(s) 1006
FokI GGATG 6 cut(s) 203, 379, 437, 458, 679, 785
FriOI GRGCYC 1 cut(s) 371
FspBI CTAG 1 cut(s) 296
GlaI GCGC 3 cut(s) 156, 1029, 1340
GsaI CCCAGC 1 cut(s) 1152
GsuI CTGGAG 1 cut(s) 1604
HaeIII GGCC 2 cut(s) 259, 1132
HapII CCGG 2 cut(s) 248, 965
HhaI GCGC 3 cut(s) 157, 1030, 1341
Hin1II CATG 4 cut(s) 406, 958, 1063, 1597
Hin6I GCGC 3 cut(s) 155, 1028, 1339
HinP1I GCGC 3 cut(s) 155, 1028, 1339
HindIII AAGCTT 2 cut(s) 1247, 1547
HpaII CCGG 2 cut(s) 248, 965
HphI GGTGA 9 cut(s) 17, 468, 521, 755, 1092, 1103, 1110, 1214, 1623
Hpy188III TCNNGA 4 cut(s) 315, 383, 499, 860
HpyAV CCTTC 7 cut(s) 346, 728, 752, 989, 1125, 1481, 1593
HpyCH4III ACNGT 5 cut(s) 591, 875, 1067, 1202, 1398
HpyCH4IV ACGT 1 cut(s) 1540
HpyF3I CTNAG 9 cut(s) 12, 240, 681, 894, 1439, 1499, 1635, 1641, 1734
HpySE526I ACGT 1 cut(s) 1540
Hsp92II CATG 4 cut(s) 406, 958, 1063, 1597
HspAI GCGC 3 cut(s) 155, 1028, 1339
Kzo9I GATC 5 cut(s) 185, 243, 317, 1270, 1561
LmnI GCTCC 2 cut(s) 613, 1623
LweI GCATC 6 cut(s) 24, 436, 570, 802, 1326, 1495
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 1540
MaeIII GTNAC 5 cut(s) 5, 905, 1098, 1442, 1629
MalI GATC 5 cut(s) 187, 245, 319, 1272, 1563
MboI GATC 5 cut(s) 185, 243, 317, 1270, 1561
MboII GAAGA 5 cut(s) 42, 57, 816, 1237, 1345
MfeI CAATTG 1 cut(s) 1158
MflI RGATCY 2 cut(s) 243, 1561
MhlI GDGCHC 1 cut(s) 371
MlyI GAGTC 5 cut(s) 419, 1106, 1366, 1633, 1784
MmeI TCCRAC 3 cut(s) 387, 1335, 1561
Mph1103I ATGCAT 1 cut(s) 960
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 6 cut(s) 264, 672, 690, 939, 1002, 1599
MslI CAYNNNNRTG 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 1313
MspI CCGG 2 cut(s) 248, 965
MspR9I CCNGG 5 cut(s) 248, 487, 966, 1122, 1134
MunI CAATTG 1 cut(s) 1158
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 3 cut(s) 487, 1122, 1134
MvnI CGCG 2 cut(s) 155, 316
NciI CCSGG 2 cut(s) 248, 966
NcoI CCATGG 1 cut(s) 1059
NdeII GATC 5 cut(s) 185, 243, 317, 1270, 1561
NlaIII CATG 4 cut(s) 406, 958, 1063, 1597
NlaIV GGNNCC 2 cut(s) 304, 1613
NmeAIII GCCGAG 2 cut(s) 1108, 1279
NmuCI GTSAC 4 cut(s) 5, 905, 1098, 1629
NruI TCGCGA 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 960
NspI RCATGY 1 cut(s) 958
PaeI GCATGC 1 cut(s) 958
PaeR7I CTCGAG 1 cut(s) 499
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 6 cut(s) 350, 386, 698, 856, 1427, 1574
PflMI CCANNNNNTGG 1 cut(s) 274
PleI GAGTC 5 cut(s) 418, 1105, 1366, 1633, 1783
PpsI GAGTC 5 cut(s) 418, 1105, 1366, 1633, 1783
PpuMI RGGWCCY 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 1540
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 3 cut(s) 485, 1120, 1132
PspFI CCCAGC 1 cut(s) 1148
PspGI CCWGG 3 cut(s) 485, 1120, 1132
PspN4I GGNNCC 2 cut(s) 304, 1613
PspPI GGNCC 4 cut(s) 100, 302, 634, 1534
PspPPI RGGWCCY 1 cut(s) 302
PstI CTGCAG 1 cut(s) 1746
PstNI CAGNNNCTG 2 cut(s) 91, 1741
PsuI RGATCY 2 cut(s) 243, 1561
PvuII CAGCTG 1 cut(s) 1313
RruI TCGCGA 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 6 cut(s) 264, 672, 690, 939, 1002, 1599
Sau3AI GATC 5 cut(s) 185, 243, 317, 1270, 1561
Sau96I GGNCC 4 cut(s) 100, 302, 634, 1534
SchI GAGTC 5 cut(s) 419, 1106, 1366, 1633, 1784
ScrFI CCNGG 5 cut(s) 248, 487, 966, 1122, 1134
SduI GDGCHC 1 cut(s) 371
SfaNI GCATC 6 cut(s) 24, 436, 570, 802, 1326, 1495
SfcI CTRYAG 2 cut(s) 1376, 1742
Sfr274I CTCGAG 1 cut(s) 499
SinI GGWCC 4 cut(s) 100, 302, 634, 1534
SlaI CTCGAG 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
SphI GCATGC 1 cut(s) 958
SsiI CCGC 3 cut(s) 731, 1013, 1112
SspI AATATT 1 cut(s) 976
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 5 cut(s) 246, 485, 964, 1120, 1132
StyI CCWWGG 2 cut(s) 295, 1059
TaaI ACNGT 5 cut(s) 591, 875, 1067, 1202, 1398
TaiI ACGT 1 cut(s) 1543
TaqI TCGA 2 cut(s) 500, 1039
TaqII GACCGA 1 cut(s) 1283
TfiI GAWTC 6 cut(s) 350, 386, 698, 856, 1427, 1574
Tru1I TTAA 6 cut(s) 264, 672, 690, 939, 1002, 1599
Tru9I TTAA 6 cut(s) 264, 672, 690, 939, 1002, 1599
TscAI CASTG 6 cut(s) 16, 360, 919, 940, 1216, 1401
TseFI GTSAC 4 cut(s) 5, 905, 1098, 1629
Tsp45I GTSAC 4 cut(s) 5, 905, 1098, 1629
TspDTI ATGAA 7 cut(s) 57, 809, 936, 957, 1238, 1257, 1530
TspGWI ACGGA 2 cut(s) 403, 1345
TspRI CASTG 6 cut(s) 16, 360, 919, 940, 1216, 1401
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 4 cut(s) 100, 302, 634, 1534
XagI CCTNNNNNAGG 1 cut(s) 1119
XapI RAATTY 6 cut(s) 135, 286, 658, 796, 1168, 1190
XceI RCATGY 1 cut(s) 958
XhoI CTCGAG 1 cut(s) 499
XmaJI CCTAGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.