transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900 |
| fragaria_vesca | FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831 |
| malus_domestica | MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1 |
| prunus_persica | Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1 |
| pyrus_communis | pycom08g01400 pycom08g01410 pycom15g01300 |
| rosa_chinensis | RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431 |
| rosa_laevigata | RLG00000011172 RLG00000013914 |
| rosa_multiflora | Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165790 Rroxscaffold_7G00199840 |
| rosa_rugosa | Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200 |
| rosa_samantha | Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300 |
| rosa_wichuraiana | Rw6G013910 Rw6G036950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 126 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 244 |
| AccII | CGCG | 1 cut(s) | 286 |
| AciI | CCGC | 3 cut(s) | 701, 983, 1082 |
| AclI | AACGTT | 1 cut(s) | 1510 |
| AclWI | GGATC | 2 cut(s) | 208, 1235 |
| AcoI | YGGCCR | 1 cut(s) | 1100 |
| AcsI | RAATTY | 6 cut(s) | 105, 256, 628, 766, 1138, 1160 |
| AcuI | CTGAAG | 2 cut(s) | 747, 1000 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 244, 587, 1091, 1299 |
| AgsI | TTSAA | 8 cut(s) | 17, 790, 1128, 1143, 1432, 1445, 1516, 1618 |
| AjnI | CCWGG | 4 cut(s) | 265, 455, 1090, 1102 |
| Alw26I | GTCTC | 4 cut(s) | 300, 476, 1030, 1412 |
| AlwI | GGATC | 2 cut(s) | 208, 1235 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1702 |
| Ama87I | CYCGRG | 2 cut(s) | 469, 1733 |
| AoxI | GGCC | 2 cut(s) | 227, 1100 |
| ApoI | RAATTY | 6 cut(s) | 105, 256, 628, 766, 1138, 1160 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 232, 264, 1721 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 34 |
| AspLEI | GCGC | 3 cut(s) | 127, 1000, 1311 |
| AspS9I | GGNCC | 4 cut(s) | 70, 272, 604, 1504 |
| AsuC2I | CCSGG | 2 cut(s) | 218, 936 |
| AsuHPI | GGTGA | 8 cut(s) | 438, 491, 725, 1062, 1073, 1080, 1184, 1593 |
| AvaI | CYCGRG | 2 cut(s) | 469, 1733 |
| AvaII | GGWCC | 4 cut(s) | 70, 272, 604, 1504 |
| BanII | GRGCYC | 1 cut(s) | 341 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1295, 1327 |
| BbvCI | CCTCAGC | 1 cut(s) | 1695 |
| BccI | CCATC | 4 cut(s) | 349, 370, 451, 631 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 680, 714 |
| BciT130I | CCWGG | 4 cut(s) | 267, 457, 1092, 1104 |
| BciVI | GTATCC | 1 cut(s) | 156 |
| BcnI | CCSGG | 2 cut(s) | 218, 936 |
| BcoDI | GTCTC | 4 cut(s) | 300, 476, 1030, 1412 |
| BfmI | CTRYAG | 2 cut(s) | 1346, 1703 |
| BfuI | GTATCC | 1 cut(s) | 156 |
| BglII | AGATCT | 1 cut(s) | 1531 |
| Bme1390I | CCNGG | 6 cut(s) | 218, 267, 457, 936, 1092, 1104 |
| Bme18I | GGWCC | 4 cut(s) | 70, 272, 604, 1504 |
| BmeT110I | CYCGRG | 2 cut(s) | 469, 1733 |
| BmgT120I | GGNCC | 4 cut(s) | 70, 272, 604, 1504 |
| BmiI | GGNNCC | 2 cut(s) | 274, 1583 |
| BmrFI | CCNGG | 6 cut(s) | 218, 267, 457, 936, 1092, 1104 |
| BmrI | ACTGGG | 1 cut(s) | 147 |
| BmsI | GCATC | 5 cut(s) | 406, 540, 772, 1296, 1465 |
| BmuI | ACTGGG | 1 cut(s) | 147 |
| BpmI | CTGGAG | 1 cut(s) | 1574 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1695 |
| BpuMI | CCSGG | 2 cut(s) | 218, 936 |
| BsaI | GGTCTC | 1 cut(s) | 1412 |
| BsaJI | CCNNGG | 4 cut(s) | 265, 384, 456, 1029 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 244, 587, 1091, 1299 |
| Bse1I | ACTGG | 1 cut(s) | 142 |
| Bse3DI | GCAATG | 2 cut(s) | 573, 1239 |
| BseBI | CCWGG | 4 cut(s) | 267, 457, 1092, 1104 |
| BseDI | CCNNGG | 4 cut(s) | 265, 384, 456, 1029 |
| BseGI | GGATG | 5 cut(s) | 186, 362, 421, 642, 748 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 244, 587, 1091, 1299 |
| BseMI | GCAATG | 2 cut(s) | 573, 1239 |
| BseMII | CTCAG | 7 cut(s) | 224, 665, 1423, 1483, 1619, 1625, 1709 |
| BseNI | ACTGG | 1 cut(s) | 142 |
| BseYI | CCCAGC | 1 cut(s) | 1118 |
| BsgI | GTGCAG | 2 cut(s) | 642, 1356 |
| Bsh1236I | CGCG | 1 cut(s) | 286 |
| BshFI | GGCC | 2 cut(s) | 229, 1102 |
| BsiHKCI | CYCGRG | 2 cut(s) | 469, 1733 |
| BsiSI | CCGG | 2 cut(s) | 218, 935 |
| BslFI | GGGAC | 5 cut(s) | 155, 721, 814, 874, 951 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 244, 587, 1091, 1299 |
| BsmAI | GTCTC | 4 cut(s) | 300, 476, 1030, 1412 |
| BsmFI | GGGAC | 5 cut(s) | 155, 721, 814, 874, 951 |
| BsnI | GGCC | 2 cut(s) | 229, 1102 |
| Bso31I | GGTCTC | 1 cut(s) | 1412 |
| BsoBI | CYCGRG | 2 cut(s) | 469, 1733 |
| Bsp1286I | GDGCHC | 1 cut(s) | 341 |
| Bsp143I | GATC | 5 cut(s) | 155, 213, 287, 1240, 1531 |
| Bsp19I | CCATGG | 1 cut(s) | 1029 |
| Bsp68I | TCGCGA | 1 cut(s) | 286 |
| BspACI | CCGC | 3 cut(s) | 701, 983, 1082 |
| BspANI | GGCC | 2 cut(s) | 229, 1102 |
| BspCNI | CTCAG | 7 cut(s) | 223, 664, 1422, 1482, 1618, 1624, 1708 |
| BspFNI | CGCG | 1 cut(s) | 286 |
| BspLI | GGNNCC | 2 cut(s) | 274, 1583 |
| BspMAI | CTGCAG | 1 cut(s) | 1707 |
| BspPI | GGATC | 2 cut(s) | 208, 1235 |
| BspTNI | GGTCTC | 1 cut(s) | 1412 |
| BsrDI | GCAATG | 2 cut(s) | 573, 1239 |
| BsrI | ACTGG | 1 cut(s) | 142 |
| BssECI | CCNNGG | 4 cut(s) | 265, 384, 456, 1029 |
| BssMI | GATC | 5 cut(s) | 155, 213, 287, 1240, 1531 |
| BssT1I | CCWWGG | 1 cut(s) | 1029 |
| Bst2UI | CCWGG | 4 cut(s) | 267, 457, 1092, 1104 |
| Bst4CI | ACNGT | 4 cut(s) | 845, 1037, 1172, 1368 |
| Bst6I | CTCTTC | 1 cut(s) | 799 |
| BstC8I | GCNNGC | 6 cut(s) | 648, 688, 926, 1221, 1251, 1521 |
| BstDEI | CTNAG | 9 cut(s) | 210, 651, 864, 1409, 1469, 1557, 1605, 1611, 1695 |
| BstDSI | CCRYGG | 2 cut(s) | 384, 1029 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1089 |
| BstF5I | GGATG | 5 cut(s) | 186, 362, 421, 642, 748 |
| BstFNI | CGCG | 1 cut(s) | 286 |
| BstHHI | GCGC | 3 cut(s) | 127, 1000, 1311 |
| BstKTI | GATC | 5 cut(s) | 158, 216, 290, 1243, 1534 |
| BstMAI | GTCTC | 4 cut(s) | 300, 476, 1030, 1412 |
| BstMBI | GATC | 5 cut(s) | 155, 213, 287, 1240, 1531 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 1229, 1594, 1636, 1639, 1645, 1654, 1681, 1705 |
| BstNI | CCWGG | 4 cut(s) | 267, 457, 1092, 1104 |
| BstNSI | RCATGY | 1 cut(s) | 928 |
| BstSCI | CCNGG | 6 cut(s) | 216, 265, 455, 934, 1090, 1102 |
| BstSFI | CTRYAG | 2 cut(s) | 1346, 1703 |
| BstUI | CGCG | 1 cut(s) | 286 |
| BstX2I | RGATCY | 2 cut(s) | 213, 1531 |
| BstYI | RGATCY | 2 cut(s) | 213, 1531 |
| BsuI | GTATCC | 1 cut(s) | 156 |
| BsuRI | GGCC | 2 cut(s) | 229, 1102 |
| BtgI | CCRYGG | 2 cut(s) | 384, 1029 |
| BtgZI | GCGATG | 1 cut(s) | 327 |
| BtsCI | GGATG | 5 cut(s) | 186, 362, 421, 642, 748 |
| BtsI | GCAGTG | 3 cut(s) | 323, 889, 910 |
| BtsIMutI | CAGTG | 5 cut(s) | 323, 889, 910, 1186, 1364 |
| BtuMI | TCGCGA | 1 cut(s) | 286 |
| Cac8I | GCNNGC | 6 cut(s) | 648, 688, 926, 1221, 1251, 1521 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1702 |
| CfoI | GCGC | 3 cut(s) | 127, 1000, 1311 |
| Cfr13I | GGNCC | 4 cut(s) | 70, 272, 604, 1504 |
| CviAII | CATG | 5 cut(s) | 373, 547, 925, 1030, 1564 |
| DdeI | CTNAG | 9 cut(s) | 210, 651, 864, 1409, 1469, 1557, 1605, 1611, 1695 |
| DpnI | GATC | 5 cut(s) | 157, 215, 289, 1242, 1533 |
| DpnII | GATC | 5 cut(s) | 155, 213, 287, 1240, 1531 |
| EaeI | YGGCCR | 1 cut(s) | 1100 |
| Eam1104I | CTCTTC | 1 cut(s) | 799 |
| EarI | CTCTTC | 1 cut(s) | 799 |
| Eco130I | CCWWGG | 1 cut(s) | 1029 |
| Eco24I | GRGCYC | 1 cut(s) | 341 |
| Eco31I | GGTCTC | 1 cut(s) | 1412 |
| Eco47I | GGWCC | 4 cut(s) | 70, 272, 604, 1504 |
| Eco57I | CTGAAG | 2 cut(s) | 747, 1000 |
| Eco88I | CYCGRG | 2 cut(s) | 469, 1733 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1089 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoRI | GAATTC | 1 cut(s) | 1138 |
| EcoRII | CCWGG | 4 cut(s) | 265, 455, 1090, 1102 |
| EcoT14I | CCWWGG | 1 cut(s) | 1029 |
| EcoT22I | ATGCAT | 1 cut(s) | 930 |
| EcoT38I | GRGCYC | 1 cut(s) | 341 |
| ErhI | CCWWGG | 1 cut(s) | 1029 |
| FaeI | CATG | 5 cut(s) | 376, 550, 928, 1033, 1567 |
| FaqI | GGGAC | 5 cut(s) | 155, 721, 814, 874, 951 |
| FatI | CATG | 5 cut(s) | 372, 546, 924, 1029, 1563 |
| FauI | CCCGC | 1 cut(s) | 976 |
| FokI | GGATG | 5 cut(s) | 173, 349, 428, 649, 755 |
| FriOI | GRGCYC | 1 cut(s) | 341 |
| FspI | TGCGCA | 1 cut(s) | 126 |
| GlaI | GCGC | 3 cut(s) | 126, 999, 1310 |
| GsaI | CCCAGC | 1 cut(s) | 1122 |
| GsuI | CTGGAG | 1 cut(s) | 1574 |
| HaeIII | GGCC | 2 cut(s) | 229, 1102 |
| HapII | CCGG | 2 cut(s) | 218, 935 |
| HhaI | GCGC | 3 cut(s) | 127, 1000, 1311 |
| Hin1II | CATG | 5 cut(s) | 376, 550, 928, 1033, 1567 |
| Hin6I | GCGC | 3 cut(s) | 125, 998, 1309 |
| HinP1I | GCGC | 3 cut(s) | 125, 998, 1309 |
| HindIII | AAGCTT | 2 cut(s) | 1217, 1517 |
| HpaII | CCGG | 2 cut(s) | 218, 935 |
| HphI | GGTGA | 8 cut(s) | 438, 491, 725, 1062, 1073, 1080, 1184, 1593 |
| Hpy166II | GTNNAC | 1 cut(s) | 425 |
| Hpy188III | TCNNGA | 4 cut(s) | 285, 353, 469, 830 |
| Hpy8I | GTNNAC | 1 cut(s) | 425 |
| HpyAV | CCTTC | 7 cut(s) | 316, 698, 722, 959, 1095, 1451, 1563 |
| HpyCH4III | ACNGT | 4 cut(s) | 845, 1037, 1172, 1368 |
| HpyCH4IV | ACGT | 1 cut(s) | 1510 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 1229, 1594, 1636, 1639, 1645, 1654, 1681, 1705 |
| HpyF3I | CTNAG | 9 cut(s) | 210, 651, 864, 1409, 1469, 1557, 1605, 1611, 1695 |
| HpySE526I | ACGT | 1 cut(s) | 1510 |
| Hsp92II | CATG | 5 cut(s) | 376, 550, 928, 1033, 1567 |
| HspAI | GCGC | 3 cut(s) | 125, 998, 1309 |
| Kzo9I | GATC | 5 cut(s) | 155, 213, 287, 1240, 1531 |
| LmnI | GCTCC | 2 cut(s) | 583, 1593 |
| LweI | GCATC | 5 cut(s) | 406, 540, 772, 1296, 1465 |
| MaeII | ACGT | 1 cut(s) | 1510 |
| MaeIII | GTNAC | 5 cut(s) | 818, 875, 1068, 1412, 1599 |
| MalI | GATC | 5 cut(s) | 157, 215, 289, 1242, 1533 |
| MboI | GATC | 5 cut(s) | 155, 213, 287, 1240, 1531 |
| MboII | GAAGA | 5 cut(s) | 12, 27, 786, 1207, 1315 |
| MfeI | CAATTG | 1 cut(s) | 1128 |
| MflI | RGATCY | 2 cut(s) | 213, 1531 |
| MhlI | GDGCHC | 1 cut(s) | 341 |
| MlyI | GAGTC | 5 cut(s) | 389, 1076, 1336, 1603, 1745 |
| MmeI | TCCRAC | 3 cut(s) | 357, 1305, 1531 |
| Mph1103I | ATGCAT | 1 cut(s) | 930 |
| MroXI | GAANNNNTTC | 1 cut(s) | 34 |
| MseI | TTAA | 6 cut(s) | 234, 642, 660, 909, 972, 1569 |
| MslI | CAYNNNNRTG | 1 cut(s) | 371 |
| MspA1I | CMGCKG | 1 cut(s) | 1283 |
| MspI | CCGG | 2 cut(s) | 218, 935 |
| MspR9I | CCNGG | 6 cut(s) | 218, 267, 457, 936, 1092, 1104 |
| MunI | CAATTG | 1 cut(s) | 1128 |
| MvaI | CCWGG | 4 cut(s) | 267, 457, 1092, 1104 |
| MvnI | CGCG | 1 cut(s) | 286 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 1229, 1594, 1636, 1639, 1645, 1654, 1681, 1705 |
| NciI | CCSGG | 2 cut(s) | 218, 936 |
| NcoI | CCATGG | 1 cut(s) | 1029 |
| NdeII | GATC | 5 cut(s) | 155, 213, 287, 1240, 1531 |
| NlaIII | CATG | 5 cut(s) | 376, 550, 928, 1033, 1567 |
| NlaIV | GGNNCC | 2 cut(s) | 274, 1583 |
| NmeAIII | GCCGAG | 2 cut(s) | 1078, 1249 |
| NmuCI | GTSAC | 3 cut(s) | 875, 1068, 1599 |
| NruI | TCGCGA | 1 cut(s) | 286 |
| NsbI | TGCGCA | 1 cut(s) | 126 |
| NsiI | ATGCAT | 1 cut(s) | 930 |
| NspI | RCATGY | 1 cut(s) | 928 |
| PaeI | GCATGC | 1 cut(s) | 928 |
| PaeR7I | CTCGAG | 1 cut(s) | 469 |
| PdmI | GAANNNNTTC | 1 cut(s) | 34 |
| PfeI | GAWTC | 6 cut(s) | 320, 356, 668, 826, 1397, 1544 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 244 |
| PleI | GAGTC | 5 cut(s) | 388, 1075, 1336, 1603, 1744 |
| PpsI | GAGTC | 5 cut(s) | 388, 1075, 1336, 1603, 1744 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp1406I | AACGTT | 1 cut(s) | 1510 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| Psp6I | CCWGG | 4 cut(s) | 265, 455, 1090, 1102 |
| PspFI | CCCAGC | 1 cut(s) | 1118 |
| PspGI | CCWGG | 4 cut(s) | 265, 455, 1090, 1102 |
| PspN4I | GGNNCC | 2 cut(s) | 274, 1583 |
| PspPI | GGNCC | 4 cut(s) | 70, 272, 604, 1504 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PstI | CTGCAG | 1 cut(s) | 1707 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1702 |
| PsuI | RGATCY | 2 cut(s) | 213, 1531 |
| PvuII | CAGCTG | 1 cut(s) | 1283 |
| RruI | TCGCGA | 1 cut(s) | 286 |
| RseI | CAYNNNNRTG | 1 cut(s) | 371 |
| SaqAI | TTAA | 6 cut(s) | 234, 642, 660, 909, 972, 1569 |
| Sau3AI | GATC | 5 cut(s) | 155, 213, 287, 1240, 1531 |
| Sau96I | GGNCC | 4 cut(s) | 70, 272, 604, 1504 |
| SchI | GAGTC | 5 cut(s) | 389, 1076, 1336, 1603, 1745 |
| ScrFI | CCNGG | 6 cut(s) | 218, 267, 457, 936, 1092, 1104 |
| SduI | GDGCHC | 1 cut(s) | 341 |
| SfaNI | GCATC | 5 cut(s) | 406, 540, 772, 1296, 1465 |
| SfcI | CTRYAG | 2 cut(s) | 1346, 1703 |
| Sfr274I | CTCGAG | 1 cut(s) | 469 |
| SinI | GGWCC | 4 cut(s) | 70, 272, 604, 1504 |
| SlaI | CTCGAG | 1 cut(s) | 469 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 371 |
| SmlI | CTYRAG | 1 cut(s) | 469 |
| SmoI | CTYRAG | 1 cut(s) | 469 |
| SphI | GCATGC | 1 cut(s) | 928 |
| SsiI | CCGC | 3 cut(s) | 701, 983, 1082 |
| SspI | AATATT | 1 cut(s) | 946 |
| StyD4I | CCNGG | 6 cut(s) | 216, 265, 455, 934, 1090, 1102 |
| StyI | CCWWGG | 1 cut(s) | 1029 |
| TaaI | ACNGT | 4 cut(s) | 845, 1037, 1172, 1368 |
| TaiI | ACGT | 1 cut(s) | 1513 |
| TaqI | TCGA | 3 cut(s) | 393, 470, 1009 |
| TaqII | GACCGA | 1 cut(s) | 1253 |
| TfiI | GAWTC | 6 cut(s) | 320, 356, 668, 826, 1397, 1544 |
| Tru1I | TTAA | 6 cut(s) | 234, 642, 660, 909, 972, 1569 |
| Tru9I | TTAA | 6 cut(s) | 234, 642, 660, 909, 972, 1569 |
| TscAI | CASTG | 5 cut(s) | 330, 889, 910, 1186, 1371 |
| TseFI | GTSAC | 3 cut(s) | 875, 1068, 1599 |
| Tsp45I | GTSAC | 3 cut(s) | 875, 1068, 1599 |
| TspDTI | ATGAA | 7 cut(s) | 27, 779, 906, 927, 1208, 1227, 1500 |
| TspGWI | ACGGA | 2 cut(s) | 373, 1315 |
| TspRI | CASTG | 5 cut(s) | 330, 889, 910, 1186, 1371 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 244 |
| VpaK11BI | GGWCC | 4 cut(s) | 70, 272, 604, 1504 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1089 |
| XapI | RAATTY | 6 cut(s) | 105, 256, 628, 766, 1138, 1160 |
| XceI | RCATGY | 1 cut(s) | 928 |
| XhoI | CTCGAG | 1 cut(s) | 469 |
| XmnI | GAANNNNTTC | 1 cut(s) | 34 |
| Zsp2I | ATGCAT | 1 cut(s) | 930 |