Rw6G013910
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
25687442 .. 25691669
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G013910.1

Sequence Viewer

Length: 1749 bp
ATGATGCAAAGGCTTCAATCTTCCTTTGGAACATCTTCATCATCAATTCTGAAACAGCCTTTGTCTATGGACCAACTGAACATACCCCAATTCAGCACTTCACAAATTCGCTCACGCCATTTTGCGCAGAGCTTTACTGGGGACAGCAGCAAAAGATCGGGGATACCACCCTCACACCCAAACCACATCCCACCACTTTCGCCTTATTCTCAGATCCCGGTGGCAAGGCCGATTAACCAGACAATGGGTTCGCAGAATTTTAGCCCAGGAGGACCCACCCATTCGCGATCATTGTCTCAACCAGCCTTCTTTTCCCTTGATTCACTGCCCCCATTGAGCCCATCGCCCTATCGTGAATCCCCATCCACCTCCATGTCGGAGTCCGTGGCTGTCGATGTGTCAATGGAGGATAGGGATGCAAGTTCACATTCCTTGCTGCCCCCATCACCTTTTTCCAGGGGTAATTTCTCGAGGGTCGGTGAGACTTTGCCCCCTCGCAAAGCTCATAGGAGGTCTAATAGTGATATACCATTTGGGTTTTCTACCATGATGCAACAACAATCTCTACCCCCCATTGCTCCCGTGAGGGGTTCGGGTGGTTTGGACCTGTCAATGTCTGGTGCAGAAAATTCAGGGATGGTTAAGCCAGCTCAGTTGGTTAAAAAGGAATCTTGTTGGGAAAGAGCTGGCGATAACAATGCGGAAGGGACGGGTGAGAGGAAGTCTGAAGGGGAAGTAGTGGATGATTTGTTTTCTGCATATATGAATTTGGATAGCATTGATGCTTTGAACTCTTCGGGGACTGATGACAAGAATGGTAACGAGAATCGTGAGGATATGGACAGTAGTAGAGCAAGTGGGACTAAGACAAATTGTGACAGCAGTGATAATGAAGTGGAAAGCAGTGTTAATGAAAGTGGAGGCATGCATAGACCGGGACTGAATATTATGACTGATATGAGGGAAGGGATTAAAAGGAGTGCGGGGGGAGATATTGCGCCGACCACTCGACACTTCAGAAGTGTCTCCATGGACAGTTTTATGGGTAAGCTGCAATTTGGTGATGAGTCACCTAAACTACCGCCTTCACCAGGAACTCGGCCAGGACAACTTTCCCCCAGCAATTCAATTGATACGAATTCAAATGCCTTTAGCTTGGAATTTGGAAACGGTGAGTTCAGTGGGGCTGAAATGAAGAAAATTATGGCTAATGAAAAGCTTGCCGAGATTGCAATGACCGATCCAAAGCGTGCAAAAAGGATATTGGCAAATCGTCAATCAGCTGCCCGTTCCAAAGAACGGAAGATGCGCTACATTTCAGAGTTGGAACACAAGGTTCAGACTCTACAGACAGAAGCAACAACACTGTCTGCACAGCTTACACTATTACAGAGAGATTCTGTTGGTCTCAGTAACCAGAATAATGAGTTGAAGTTTCGCCTTCAAGCTATGGAACAACAGGCTCAACTCAGAGATGCTCTAAATGAAGCCCTAACATCAGAGGTCCAACGTTTGAAGCTTGCTACAACAGATCTGAATGGGGATTCTCGCCCTTCTAAGAGCATGATTAACACCCAGAGGTTCCAGCTCCAGCAGCAGTCACCTCAGACTCAGTTCAACCTACATCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAACAGCAACAACAGCAACAGACACCTCAGCAACTGCAGCAGAATGGCTCAACAACCTCAAAGCCCGAGTCAAATCAATAG

Protein Analysis

582

Amino Acids

64.0

Weight (kDa)

6.83

Isoelectric Point (pI)

69.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 413 - 465 9.3e-08 Basic region leucine zipper
bZIP_1 PF00170 416 - 470 1.3e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 126
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 1 cut(s) 286
AciI CCGC 3 cut(s) 701, 983, 1082
AclI AACGTT 1 cut(s) 1510
AclWI GGATC 2 cut(s) 208, 1235
AcoI YGGCCR 1 cut(s) 1100
AcsI RAATTY 6 cut(s) 105, 256, 628, 766, 1138, 1160
AcuI CTGAAG 2 cut(s) 747, 1000
AfiI CCNNNNNNNGG 4 cut(s) 244, 587, 1091, 1299
AgsI TTSAA 8 cut(s) 17, 790, 1128, 1143, 1432, 1445, 1516, 1618
AjnI CCWGG 4 cut(s) 265, 455, 1090, 1102
Alw26I GTCTC 4 cut(s) 300, 476, 1030, 1412
AlwI GGATC 2 cut(s) 208, 1235
AlwNI CAGNNNCTG 1 cut(s) 1702
Ama87I CYCGRG 2 cut(s) 469, 1733
AoxI GGCC 2 cut(s) 227, 1100
ApoI RAATTY 6 cut(s) 105, 256, 628, 766, 1138, 1160
ArsI GACNNNNNNTTYG 3 cut(s) 232, 264, 1721
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 3 cut(s) 127, 1000, 1311
AspS9I GGNCC 4 cut(s) 70, 272, 604, 1504
AsuC2I CCSGG 2 cut(s) 218, 936
AsuHPI GGTGA 8 cut(s) 438, 491, 725, 1062, 1073, 1080, 1184, 1593
AvaI CYCGRG 2 cut(s) 469, 1733
AvaII GGWCC 4 cut(s) 70, 272, 604, 1504
BanII GRGCYC 1 cut(s) 341
BarI GAAGNNNNNNTAC 2 cut(s) 1295, 1327
BbvCI CCTCAGC 1 cut(s) 1695
BccI CCATC 4 cut(s) 349, 370, 451, 631
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciT130I CCWGG 4 cut(s) 267, 457, 1092, 1104
BciVI GTATCC 1 cut(s) 156
BcnI CCSGG 2 cut(s) 218, 936
BcoDI GTCTC 4 cut(s) 300, 476, 1030, 1412
BfmI CTRYAG 2 cut(s) 1346, 1703
BfuI GTATCC 1 cut(s) 156
BglII AGATCT 1 cut(s) 1531
Bme1390I CCNGG 6 cut(s) 218, 267, 457, 936, 1092, 1104
Bme18I GGWCC 4 cut(s) 70, 272, 604, 1504
BmeT110I CYCGRG 2 cut(s) 469, 1733
BmgT120I GGNCC 4 cut(s) 70, 272, 604, 1504
BmiI GGNNCC 2 cut(s) 274, 1583
BmrFI CCNGG 6 cut(s) 218, 267, 457, 936, 1092, 1104
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 5 cut(s) 406, 540, 772, 1296, 1465
BmuI ACTGGG 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 1574
Bpu10I CCTNAGC 1 cut(s) 1695
BpuMI CCSGG 2 cut(s) 218, 936
BsaI GGTCTC 1 cut(s) 1412
BsaJI CCNNGG 4 cut(s) 265, 384, 456, 1029
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 587, 1091, 1299
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 2 cut(s) 573, 1239
BseBI CCWGG 4 cut(s) 267, 457, 1092, 1104
BseDI CCNNGG 4 cut(s) 265, 384, 456, 1029
BseGI GGATG 5 cut(s) 186, 362, 421, 642, 748
BseLI CCNNNNNNNGG 4 cut(s) 244, 587, 1091, 1299
BseMI GCAATG 2 cut(s) 573, 1239
BseMII CTCAG 7 cut(s) 224, 665, 1423, 1483, 1619, 1625, 1709
BseNI ACTGG 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 1118
BsgI GTGCAG 2 cut(s) 642, 1356
Bsh1236I CGCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 229, 1102
BsiHKCI CYCGRG 2 cut(s) 469, 1733
BsiSI CCGG 2 cut(s) 218, 935
BslFI GGGAC 5 cut(s) 155, 721, 814, 874, 951
BslI CCNNNNNNNGG 4 cut(s) 244, 587, 1091, 1299
BsmAI GTCTC 4 cut(s) 300, 476, 1030, 1412
BsmFI GGGAC 5 cut(s) 155, 721, 814, 874, 951
BsnI GGCC 2 cut(s) 229, 1102
Bso31I GGTCTC 1 cut(s) 1412
BsoBI CYCGRG 2 cut(s) 469, 1733
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 5 cut(s) 155, 213, 287, 1240, 1531
Bsp19I CCATGG 1 cut(s) 1029
Bsp68I TCGCGA 1 cut(s) 286
BspACI CCGC 3 cut(s) 701, 983, 1082
BspANI GGCC 2 cut(s) 229, 1102
BspCNI CTCAG 7 cut(s) 223, 664, 1422, 1482, 1618, 1624, 1708
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 274, 1583
BspMAI CTGCAG 1 cut(s) 1707
BspPI GGATC 2 cut(s) 208, 1235
BspTNI GGTCTC 1 cut(s) 1412
BsrDI GCAATG 2 cut(s) 573, 1239
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 4 cut(s) 265, 384, 456, 1029
BssMI GATC 5 cut(s) 155, 213, 287, 1240, 1531
BssT1I CCWWGG 1 cut(s) 1029
Bst2UI CCWGG 4 cut(s) 267, 457, 1092, 1104
Bst4CI ACNGT 4 cut(s) 845, 1037, 1172, 1368
Bst6I CTCTTC 1 cut(s) 799
BstC8I GCNNGC 6 cut(s) 648, 688, 926, 1221, 1251, 1521
BstDEI CTNAG 9 cut(s) 210, 651, 864, 1409, 1469, 1557, 1605, 1611, 1695
BstDSI CCRYGG 2 cut(s) 384, 1029
BstENI CCTNNNNNAGG 1 cut(s) 1089
BstF5I GGATG 5 cut(s) 186, 362, 421, 642, 748
BstFNI CGCG 1 cut(s) 286
BstHHI GCGC 3 cut(s) 127, 1000, 1311
BstKTI GATC 5 cut(s) 158, 216, 290, 1243, 1534
BstMAI GTCTC 4 cut(s) 300, 476, 1030, 1412
BstMBI GATC 5 cut(s) 155, 213, 287, 1240, 1531
BstMWI GCNNNNNNNGC 8 cut(s) 1229, 1594, 1636, 1639, 1645, 1654, 1681, 1705
BstNI CCWGG 4 cut(s) 267, 457, 1092, 1104
BstNSI RCATGY 1 cut(s) 928
BstSCI CCNGG 6 cut(s) 216, 265, 455, 934, 1090, 1102
BstSFI CTRYAG 2 cut(s) 1346, 1703
BstUI CGCG 1 cut(s) 286
BstX2I RGATCY 2 cut(s) 213, 1531
BstYI RGATCY 2 cut(s) 213, 1531
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 229, 1102
BtgI CCRYGG 2 cut(s) 384, 1029
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 5 cut(s) 186, 362, 421, 642, 748
BtsI GCAGTG 3 cut(s) 323, 889, 910
BtsIMutI CAGTG 5 cut(s) 323, 889, 910, 1186, 1364
BtuMI TCGCGA 1 cut(s) 286
Cac8I GCNNGC 6 cut(s) 648, 688, 926, 1221, 1251, 1521
CaiI CAGNNNCTG 1 cut(s) 1702
CfoI GCGC 3 cut(s) 127, 1000, 1311
Cfr13I GGNCC 4 cut(s) 70, 272, 604, 1504
CviAII CATG 5 cut(s) 373, 547, 925, 1030, 1564
DdeI CTNAG 9 cut(s) 210, 651, 864, 1409, 1469, 1557, 1605, 1611, 1695
DpnI GATC 5 cut(s) 157, 215, 289, 1242, 1533
DpnII GATC 5 cut(s) 155, 213, 287, 1240, 1531
EaeI YGGCCR 1 cut(s) 1100
Eam1104I CTCTTC 1 cut(s) 799
EarI CTCTTC 1 cut(s) 799
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 1412
Eco47I GGWCC 4 cut(s) 70, 272, 604, 1504
Eco57I CTGAAG 2 cut(s) 747, 1000
Eco88I CYCGRG 2 cut(s) 469, 1733
EcoNI CCTNNNNNAGG 1 cut(s) 1089
EcoO109I RGGNCCY 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 1138
EcoRII CCWGG 4 cut(s) 265, 455, 1090, 1102
EcoT14I CCWWGG 1 cut(s) 1029
EcoT22I ATGCAT 1 cut(s) 930
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 5 cut(s) 376, 550, 928, 1033, 1567
FaqI GGGAC 5 cut(s) 155, 721, 814, 874, 951
FatI CATG 5 cut(s) 372, 546, 924, 1029, 1563
FauI CCCGC 1 cut(s) 976
FokI GGATG 5 cut(s) 173, 349, 428, 649, 755
FriOI GRGCYC 1 cut(s) 341
FspI TGCGCA 1 cut(s) 126
GlaI GCGC 3 cut(s) 126, 999, 1310
GsaI CCCAGC 1 cut(s) 1122
GsuI CTGGAG 1 cut(s) 1574
HaeIII GGCC 2 cut(s) 229, 1102
HapII CCGG 2 cut(s) 218, 935
HhaI GCGC 3 cut(s) 127, 1000, 1311
Hin1II CATG 5 cut(s) 376, 550, 928, 1033, 1567
Hin6I GCGC 3 cut(s) 125, 998, 1309
HinP1I GCGC 3 cut(s) 125, 998, 1309
HindIII AAGCTT 2 cut(s) 1217, 1517
HpaII CCGG 2 cut(s) 218, 935
HphI GGTGA 8 cut(s) 438, 491, 725, 1062, 1073, 1080, 1184, 1593
Hpy166II GTNNAC 1 cut(s) 425
Hpy188III TCNNGA 4 cut(s) 285, 353, 469, 830
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 7 cut(s) 316, 698, 722, 959, 1095, 1451, 1563
HpyCH4III ACNGT 4 cut(s) 845, 1037, 1172, 1368
HpyCH4IV ACGT 1 cut(s) 1510
HpyF10VI GCNNNNNNNGC 8 cut(s) 1229, 1594, 1636, 1639, 1645, 1654, 1681, 1705
HpyF3I CTNAG 9 cut(s) 210, 651, 864, 1409, 1469, 1557, 1605, 1611, 1695
HpySE526I ACGT 1 cut(s) 1510
Hsp92II CATG 5 cut(s) 376, 550, 928, 1033, 1567
HspAI GCGC 3 cut(s) 125, 998, 1309
Kzo9I GATC 5 cut(s) 155, 213, 287, 1240, 1531
LmnI GCTCC 2 cut(s) 583, 1593
LweI GCATC 5 cut(s) 406, 540, 772, 1296, 1465
MaeII ACGT 1 cut(s) 1510
MaeIII GTNAC 5 cut(s) 818, 875, 1068, 1412, 1599
MalI GATC 5 cut(s) 157, 215, 289, 1242, 1533
MboI GATC 5 cut(s) 155, 213, 287, 1240, 1531
MboII GAAGA 5 cut(s) 12, 27, 786, 1207, 1315
MfeI CAATTG 1 cut(s) 1128
MflI RGATCY 2 cut(s) 213, 1531
MhlI GDGCHC 1 cut(s) 341
MlyI GAGTC 5 cut(s) 389, 1076, 1336, 1603, 1745
MmeI TCCRAC 3 cut(s) 357, 1305, 1531
Mph1103I ATGCAT 1 cut(s) 930
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 6 cut(s) 234, 642, 660, 909, 972, 1569
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 1283
MspI CCGG 2 cut(s) 218, 935
MspR9I CCNGG 6 cut(s) 218, 267, 457, 936, 1092, 1104
MunI CAATTG 1 cut(s) 1128
MvaI CCWGG 4 cut(s) 267, 457, 1092, 1104
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 8 cut(s) 1229, 1594, 1636, 1639, 1645, 1654, 1681, 1705
NciI CCSGG 2 cut(s) 218, 936
NcoI CCATGG 1 cut(s) 1029
NdeII GATC 5 cut(s) 155, 213, 287, 1240, 1531
NlaIII CATG 5 cut(s) 376, 550, 928, 1033, 1567
NlaIV GGNNCC 2 cut(s) 274, 1583
NmeAIII GCCGAG 2 cut(s) 1078, 1249
NmuCI GTSAC 3 cut(s) 875, 1068, 1599
NruI TCGCGA 1 cut(s) 286
NsbI TGCGCA 1 cut(s) 126
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 1 cut(s) 928
PaeI GCATGC 1 cut(s) 928
PaeR7I CTCGAG 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 6 cut(s) 320, 356, 668, 826, 1397, 1544
PflMI CCANNNNNTGG 1 cut(s) 244
PleI GAGTC 5 cut(s) 388, 1075, 1336, 1603, 1744
PpsI GAGTC 5 cut(s) 388, 1075, 1336, 1603, 1744
PpuMI RGGWCCY 1 cut(s) 272
Psp1406I AACGTT 1 cut(s) 1510
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 4 cut(s) 265, 455, 1090, 1102
PspFI CCCAGC 1 cut(s) 1118
PspGI CCWGG 4 cut(s) 265, 455, 1090, 1102
PspN4I GGNNCC 2 cut(s) 274, 1583
PspPI GGNCC 4 cut(s) 70, 272, 604, 1504
PspPPI RGGWCCY 1 cut(s) 272
PstI CTGCAG 1 cut(s) 1707
PstNI CAGNNNCTG 1 cut(s) 1702
PsuI RGATCY 2 cut(s) 213, 1531
PvuII CAGCTG 1 cut(s) 1283
RruI TCGCGA 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 6 cut(s) 234, 642, 660, 909, 972, 1569
Sau3AI GATC 5 cut(s) 155, 213, 287, 1240, 1531
Sau96I GGNCC 4 cut(s) 70, 272, 604, 1504
SchI GAGTC 5 cut(s) 389, 1076, 1336, 1603, 1745
ScrFI CCNGG 6 cut(s) 218, 267, 457, 936, 1092, 1104
SduI GDGCHC 1 cut(s) 341
SfaNI GCATC 5 cut(s) 406, 540, 772, 1296, 1465
SfcI CTRYAG 2 cut(s) 1346, 1703
Sfr274I CTCGAG 1 cut(s) 469
SinI GGWCC 4 cut(s) 70, 272, 604, 1504
SlaI CTCGAG 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
SphI GCATGC 1 cut(s) 928
SsiI CCGC 3 cut(s) 701, 983, 1082
SspI AATATT 1 cut(s) 946
StyD4I CCNGG 6 cut(s) 216, 265, 455, 934, 1090, 1102
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 4 cut(s) 845, 1037, 1172, 1368
TaiI ACGT 1 cut(s) 1513
TaqI TCGA 3 cut(s) 393, 470, 1009
TaqII GACCGA 1 cut(s) 1253
TfiI GAWTC 6 cut(s) 320, 356, 668, 826, 1397, 1544
Tru1I TTAA 6 cut(s) 234, 642, 660, 909, 972, 1569
Tru9I TTAA 6 cut(s) 234, 642, 660, 909, 972, 1569
TscAI CASTG 5 cut(s) 330, 889, 910, 1186, 1371
TseFI GTSAC 3 cut(s) 875, 1068, 1599
Tsp45I GTSAC 3 cut(s) 875, 1068, 1599
TspDTI ATGAA 7 cut(s) 27, 779, 906, 927, 1208, 1227, 1500
TspGWI ACGGA 2 cut(s) 373, 1315
TspRI CASTG 5 cut(s) 330, 889, 910, 1186, 1371
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 4 cut(s) 70, 272, 604, 1504
XagI CCTNNNNNAGG 1 cut(s) 1089
XapI RAATTY 6 cut(s) 105, 256, 628, 766, 1138, 1160
XceI RCATGY 1 cut(s) 928
XhoI CTCGAG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.