Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Reverse (-)

46518846 .. 46520127

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0314000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCCGAGGACGAACAGATCGTCGCCACCACCGAGACCGTCGAGCCCGCAACCGAGACCGTCGACCCCCCGCCGGCCGACGACAAGCCGGAGGCCAAGTCCGGCAAGGCCACCAAGGCCAAGGAGCCCAAGGCCAAGAAGCCCGCTGCGCCCAAGAAGGCCAGGACTGCTCCCACTCATCCTCCTTATGAAGAGATGATCAAGGATGCGATTGTGACTCTTAAGGAGAGGACTGGTTCGAGCCAGTATGCGATCACTAAGTTCATCGAGGAGAAGCACAAGCAGCTCCCTCCAAACTTCAAGAAGCTTCTGCTCTACCATTTGAAGAAGCTCGTCAGCTCCGATAAGCTCGCCAAGGTCAAAAGCTCCTATAAGATTCCGTCGGCTCGGTCCGCCGCAGCTCCACCTAAGCCCGCTGCTGCTCCGGCCAAGAAGAAGCCTGCCGCCGCGGCCAAGCCCAAGGCCAAGGCTCCTGCGAAGCCAAAGGGAAAGACTAAGTCGGTCAAGGCGGCGAGCAAGTCTCCGGCCAAGGCTAAGGCCGCTGCTGCTAAGCCAAAGCCGAAGCCAAAAGCCAAGCCTGCGGCCAAGGCAAAGCCTGCTCCGGCCAAGACCAAGGCGGCTGCTCCGGCTAAGGCCAAGGCTGCTCCGGCTAAGGCAAAGGCTGCTCCGGCCAAGACCAAGGCTGCCCCGGCCGCCAAGCCTAAGGCAGCAGCTCCCAAGCCCAAGCTTAAGGAGAAGCCAGCCAAGGCTGCGAGGACGTTGACCAGGTCATCGCCTGGGAGGAAGGCTCCGGCGGCCAGGGCGGCCAAGCCAGCGCCGAAGAAGGCAGCGACACCGAAGAAGGCACCGACCCGTACTGTGAAGCCGAGAAGCGTCAAGTCGCCGGCGAAGAAAGCACCAGCTAGGAAGGGAAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

306

Amino Acids

31.77

Weight (kDa)

10.67

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	60 - 121	1.2e-18	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	844
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	856
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	2 cut(s)	221, 728
AgsI	TTSAA	2 cut(s)	301, 325
AjnI	CCWGG	4 cut(s)	161, 764, 775, 797
Alw26I	GTCTC	3 cut(s)	29, 50, 525
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	151, 817
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	390
AxyI	CCTNAGG	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	844
BanII	GRGCYC	2 cut(s)	48, 129
BciT130I	CCWGG	4 cut(s)	163, 766, 777, 799
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	689
BcoDI	GTCTC	3 cut(s)	29, 50, 525
BfaI	CTAG	1 cut(s)	903
BfoI	RGCGCY	1 cut(s)	818
BfrI	CTTAAG	2 cut(s)	221, 728
BglI	GCCNNNNNGGC	3 cut(s)	116, 449, 803
BlpI	GCTNAGC	1 cut(s)	549
Bme1390I	CCNGG	5 cut(s)	163, 689, 766, 777, 799
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	4 cut(s)	126, 471, 789, 846
BmrFI	CCNGG	5 cut(s)	163, 689, 766, 777, 799
BmsI	GCATC	1 cut(s)	196
BplI	GAGNNNNNCTC	4 cut(s)	505, 537, 772, 804
Bpu10I	CCTNAGC	4 cut(s)	408, 534, 630, 651
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	689
BsaI	GGTCTC	2 cut(s)	29, 50
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	2 cut(s)	73, 883
Bse1I	ACTGG	2 cut(s)	238, 244
Bse21I	CCTNAGG	1 cut(s)	702
BseBI	CCWGG	4 cut(s)	163, 766, 777, 799
BseGI	GGATG	2 cut(s)	178, 211
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	238, 244
BseRI	GAGGAG	1 cut(s)	284
BseX3I	CGGCCG	2 cut(s)	75, 690
Bsh1236I	CGCG	1 cut(s)	449
Bsh1285I	CGRYCG	2 cut(s)	78, 693
BshNI	GGYRCC	1 cut(s)	844
BsiEI	CGRYCG	2 cut(s)	78, 693
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	3 cut(s)	29, 50, 525
Bso31I	GGTCTC	2 cut(s)	29, 50
Bsp1286I	GDGCHC	2 cut(s)	48, 129
Bsp143I	GATC	3 cut(s)	18, 198, 252
Bsp1720I	GCTNAGC	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	4 cut(s)	126, 471, 789, 846
BspT107I	GGYRCC	1 cut(s)	844
BspTI	CTTAAG	2 cut(s)	221, 728
BspTNI	GGTCTC	2 cut(s)	29, 50
BsrFI	RCCGGY	2 cut(s)	73, 883
BsrI	ACTGG	2 cut(s)	238, 244
BssAI	RCCGGY	2 cut(s)	73, 883
BssMI	GATC	3 cut(s)	18, 198, 252
Bst2UI	CCWGG	4 cut(s)	163, 766, 777, 799
Bst4CI	ACNGT	3 cut(s)	40, 61, 859
Bst6I	CTCTTC	1 cut(s)	186
BstAFI	CTTAAG	2 cut(s)	221, 728
BstAPI	GCANNNNNTGC	2 cut(s)	596, 662
BstDEI	CTNAG	8 cut(s)	258, 408, 495, 534, 549, 630, 651, 702
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	178, 211
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	818
BstHHI	GCGC	2 cut(s)	151, 817
BstKTI	GATC	3 cut(s)	21, 201, 255
BstMAI	GTCTC	3 cut(s)	29, 50, 525
BstMBI	GATC	3 cut(s)	18, 198, 252
BstMCI	CGRYCG	2 cut(s)	78, 693
BstNI	CCWGG	4 cut(s)	163, 766, 777, 799
BstSCI	CCNGG	5 cut(s)	161, 687, 764, 775, 797
BstUI	CGCG	1 cut(s)	449
BstZI	CGGCCG	2 cut(s)	75, 690
Bsu36I	CCTNAGG	1 cut(s)	702
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	756
BtsCI	GGATG	2 cut(s)	178, 211
CfoI	GCGC	2 cut(s)	151, 817
Cfr10I	RCCGGY	2 cut(s)	73, 883
Cfr13I	GGNCC	1 cut(s)	390
Cfr42I	CCGCGG	1 cut(s)	450
CpoI	CGGWCCG	1 cut(s)	390
CseI	GACGC	1 cut(s)	862
CsiI	ACCWGGT	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	855
CspI	CGGWCCG	1 cut(s)	390
CviQI	GTAC	1 cut(s)	855
DdeI	CTNAG	8 cut(s)	258, 408, 495, 534, 549, 630, 651, 702
DpnI	GATC	3 cut(s)	20, 200, 254
DpnII	GATC	3 cut(s)	18, 198, 252
EagI	CGGCCG	2 cut(s)	75, 690
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	382
EclXI	CGGCCG	2 cut(s)	75, 690
Eco24I	GRGCYC	2 cut(s)	48, 129
Eco31I	GGTCTC	2 cut(s)	29, 50
Eco47I	GGWCC	1 cut(s)	390
Eco52I	CGGCCG	2 cut(s)	75, 690
Eco81I	CCTNAGG	1 cut(s)	702
EcoRII	CCWGG	4 cut(s)	161, 764, 775, 797
EcoT38I	GRGCYC	2 cut(s)	48, 129
FaiI	YATR	3 cut(s)	189, 249, 372
FauI	CCCGC	4 cut(s)	55, 78, 151, 421
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	63
FokI	GGATG	2 cut(s)	165, 218
FriOI	GRGCYC	2 cut(s)	48, 129
FspBI	CTAG	1 cut(s)	903
GlaI	GCGC	2 cut(s)	150, 816
HaeII	RGCGCY	1 cut(s)	818
HgaI	GACGC	1 cut(s)	862
HhaI	GCGC	2 cut(s)	151, 817
Hin6I	GCGC	2 cut(s)	149, 815
HinP1I	GCGC	2 cut(s)	149, 815
HincII	GTYRAC	2 cut(s)	64, 762
HindII	GTYRAC	2 cut(s)	64, 762
HindIII	AAGCTT	2 cut(s)	305, 725
HinfI	GANTC	2 cut(s)	217, 376
Hpy166II	GTNNAC	2 cut(s)	64, 762
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	2 cut(s)	64, 762
Hpy99I	CGWCG	5 cut(s)	26, 44, 65, 83, 385
HpyAV	CCTTC	6 cut(s)	151, 778, 817, 835, 901, 906
HpyCH4III	ACNGT	3 cut(s)	40, 61, 859
HpyCH4IV	ACGT	1 cut(s)	758
HpyF3I	CTNAG	8 cut(s)	258, 408, 495, 534, 549, 630, 651, 702
HpySE526I	ACGT	1 cut(s)	758
HspAI	GCGC	2 cut(s)	149, 815
KroI	GCCGGC	2 cut(s)	73, 883
KroNI	GCCGGC	2 cut(s)	75, 885
Ksp22I	TGATCA	1 cut(s)	198
KspI	CCGCGG	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	18, 198, 252
LweI	GCATC	1 cut(s)	196
MabI	ACCWGGT	1 cut(s)	764
MaeI	CTAG	1 cut(s)	903
MaeII	ACGT	1 cut(s)	758
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	3 cut(s)	20, 200, 254
MboI	GATC	3 cut(s)	18, 198, 252
MboII	GAAGA	6 cut(s)	203, 337, 445, 832, 850, 901
MhlI	GDGCHC	2 cut(s)	48, 129
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	7 cut(s)	85, 192, 222, 262, 300, 747, 774
MreI	CGCCGGCG	1 cut(s)	883
MroNI	GCCGGC	2 cut(s)	73, 883
MseI	TTAA	2 cut(s)	222, 729
MspA1I	CMGCKG	4 cut(s)	146, 416, 449, 542
MspCI	CTTAAG	2 cut(s)	221, 728
MspR9I	CCNGG	5 cut(s)	163, 689, 766, 777, 799
MvaI	CCWGG	4 cut(s)	163, 766, 777, 799
MvnI	CGCG	1 cut(s)	449
NaeI	GCCGGC	2 cut(s)	75, 885
NciI	CCSGG	1 cut(s)	689
NdeII	GATC	3 cut(s)	18, 198, 252
NgoMIV	GCCGGC	2 cut(s)	73, 883
NlaIV	GGNNCC	4 cut(s)	126, 471, 789, 846
NmeAIII	GCCGAG	2 cut(s)	31, 891
NmuCI	GTSAC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 30, 339
PdiI	GCCGGC	2 cut(s)	75, 885
PfeI	GAWTC	1 cut(s)	376
PflFI	GACNNNGTC	2 cut(s)	496, 766
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	4 cut(s)	161, 764, 775, 797
PspGI	CCWGG	4 cut(s)	161, 764, 775, 797
PspN4I	GGNNCC	4 cut(s)	126, 471, 789, 846
PspPI	GGNCC	1 cut(s)	390
PsyI	GACNNNGTC	2 cut(s)	496, 766
RsaI	GTAC	1 cut(s)	856
RsaNI	GTAC	1 cut(s)	855
Rsr2I	CGGWCCG	1 cut(s)	390
RsrII	CGGWCCG	1 cut(s)	390
SacII	CCGCGG	1 cut(s)	450
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	222, 729
Sau3AI	GATC	3 cut(s)	18, 198, 252
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	5 cut(s)	163, 689, 766, 777, 799
SduI	GDGCHC	2 cut(s)	48, 129
SexAI	ACCWGGT	1 cut(s)	764
SfaNI	GCATC	1 cut(s)	196
SfiI	GGCCNNNNNGGCC	2 cut(s)	116, 803
Sfr303I	CCGCGG	1 cut(s)	450
SgrAI	CRCCGGYG	1 cut(s)	883
SgrBI	CCGCGG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	221, 728
SmoI	CTYRAG	2 cut(s)	221, 728
SspMI	CTAG	1 cut(s)	903
StyD4I	CCNGG	5 cut(s)	161, 687, 764, 775, 797
TaaI	ACNGT	3 cut(s)	40, 61, 859
TaiI	ACGT	1 cut(s)	761
TaqI	TCGA	4 cut(s)	42, 63, 239, 267
TaqII	GACCGA	2 cut(s)	378, 490
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	2 cut(s)	222, 729
Tru9I	TTAA	2 cut(s)	222, 729
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	204, 253
TspGWI	ACGGA	1 cut(s)	369
Tth111I	GACNNNGTC	2 cut(s)	496, 766
Vha464I	CTTAAG	2 cut(s)	221, 728
VpaK11BI	GGWCC	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.