Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Reverse (-)

47124263 .. 47128722

Gene Structure 4460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAGGGGTTCGGGTGGTTTGGACCTGTCAATGTCTGGTACAGAAAATTCAGGGATGGTTAAGCCAGCTCAGTTGGTTAAAAAAGAATCTAGTTGGGAAAGAGCTGGCGATAACAATGCGGAAGGGACAGGTGAGAGGAAGTCTGAAGGGGAAGTAGTGGATGATTTGTTTTCTGCATATATGAATTTGGATAGCATTGATGCTTTGAACTCTTCAGGGACTGATGACAAGAATGGTAATGAGAATCGTGAGGATATGGACAGTAGTAGAGCAAGTGGGACCAAGACAAATTGTGACAGCAGTGATAATGAAGTGGAAAGCAGTGTTAATGAAAGTGGAGGCATGAATAGACCGGGACTGAATATTATGACTGATATGAGGGAAGGGATTAAAAGGAGTGCGGGGGGAGATATTGCGCCGACCACTCGACACTTCAGAAGTGTCTCCATGGACAGTTTTATGGGGAAGCTGCAATTTGGTGATGAGTCACCTAAACTACCGCCTTCACCAGGAACTCGGCCAGGACAACTGTCCCCCAGCAATTCAATTGATACGAATTCAAATGCCTTTAGCTTGGAATTTGGAAACGGTGAGTTCAGTGGGGCTGAAATGAAGAAAATTATGGCTAATGAAAAGCTTGCCGAGATTGCAATGACCGATCCAAAGCGTGCAAAAAGGATATTGGCAAATCGTCAATCAGCTGCCCGTTCCAAAGAACGGAAGATGCGCTACATTTCAGAGTTGGAACACAAGGTTCAGACTCTACAGACAGAAGCAACAACACTGTCTGCACAGCTTACACTATTACAGAGAGATTCTGTTGGTCTCAGTAACCAGAATAATGAGTTGAAGTTTCGCCTTCAAGCTATGGAACAACAGGCTCAACTCAGAGATGCTCTAAATGAAGCCCTAACATCAGAGGTCCAACGTTTGAAGCTTGCTACAGCAGATCTGAATGGGGATTCTCGCCCTTCTAAGAGCATGATTAACGCTCAGAGGTTCCAGCTCCAGCAGCAGTCACCTCAGACTCAGTTCAACCTACAGCAGCAGCAGCAGCAACAGCAACAACAGCAGCAGCAACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAGCAACAGCAACTGCAGCAGAATGGCACAACAACCTCAAAGCCTGAGTCAAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

397

Amino Acids

44.06

Weight (kDa)

5.33

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	219 - 271	5.5e-08	Basic region leucine zipper
bZIP_1	PF00170	222 - 276	6.9e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	119, 401, 500
AclI	AACGTT	1 cut(s)	928
AclWI	GGATC	1 cut(s)	653
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	4 cut(s)	46, 184, 556, 578
AcuI	CTGAAG	3 cut(s)	165, 198, 418
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	509, 717
AgsI	TTSAA	7 cut(s)	208, 546, 561, 850, 863, 934, 1036
AjnI	CCWGG	2 cut(s)	508, 520
Alw26I	GTCTC	2 cut(s)	448, 830
AlwI	GGATC	1 cut(s)	653
AlwNI	CAGNNNCTG	2 cut(s)	221, 1147
AoxI	GGCC	1 cut(s)	518
ApoI	RAATTY	4 cut(s)	46, 184, 556, 578
ArsI	GACNNNNNNTTYG	1 cut(s)	1166
AspLEI	GCGC	2 cut(s)	418, 729
AspS9I	GGNCC	3 cut(s)	22, 279, 922
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	6 cut(s)	143, 480, 491, 498, 602, 1011
AvaII	GGWCC	3 cut(s)	22, 279, 922
BarI	GAAGNNNNNNTAC	2 cut(s)	713, 745
BccI	CCATC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	2 cut(s)	510, 522
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	448, 830
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	4 cut(s)	764, 942, 1040, 1148
BglII	AGATCT	1 cut(s)	949
Bme1390I	CCNGG	3 cut(s)	354, 510, 522
Bme18I	GGWCC	3 cut(s)	22, 279, 922
BmgT120I	GGNCC	3 cut(s)	22, 279, 922
BmiI	GGNNCC	2 cut(s)	280, 1001
BmrFI	CCNGG	3 cut(s)	354, 510, 522
BmsI	GCATC	3 cut(s)	190, 714, 883
BoxI	GACNNNNGTC	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	992
BpuMI	CCSGG	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 717
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	510, 522
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	2 cut(s)	60, 166
BseLI	CCNNNNNNNGG	2 cut(s)	509, 717
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	7 cut(s)	83, 841, 901, 1007, 1037, 1043, 1170
BseYI	CCCAGC	1 cut(s)	536
BsgI	GTGCAG	1 cut(s)	774
BshFI	GGCC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	5 cut(s)	139, 232, 292, 369, 517
BslI	CCNNNNNNNGG	2 cut(s)	509, 717
BsmAI	GTCTC	2 cut(s)	448, 830
BsmFI	GGGAC	5 cut(s)	139, 232, 292, 369, 517
BsnI	GGCC	1 cut(s)	520
Bso31I	GGTCTC	1 cut(s)	830
Bsp143I	GATC	2 cut(s)	658, 949
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	3 cut(s)	119, 401, 500
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	7 cut(s)	82, 840, 900, 1006, 1036, 1042, 1171
BspLI	GGNNCC	2 cut(s)	280, 1001
BspMAI	CTGCAG	1 cut(s)	1152
BspPI	GGATC	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	830
BsrDI	GCAATG	1 cut(s)	657
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	2 cut(s)	658, 949
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	510, 522
Bst4CI	ACNGT	5 cut(s)	263, 455, 531, 590, 786
Bst6I	CTCTTC	1 cut(s)	217
BstC8I	GCNNGC	5 cut(s)	66, 106, 639, 669, 939
BstDEI	CTNAG	8 cut(s)	69, 827, 887, 975, 993, 1023, 1029, 1179
BstDSI	CCRYGG	1 cut(s)	447
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	60, 166
BstHHI	GCGC	2 cut(s)	418, 729
BstKTI	GATC	2 cut(s)	661, 952
BstMAI	GTCTC	2 cut(s)	448, 830
BstMBI	GATC	2 cut(s)	658, 949
BstNI	CCWGG	2 cut(s)	510, 522
BstPAI	GACNNNNGTC	1 cut(s)	529
BstSCI	CCNGG	3 cut(s)	352, 508, 520
BstSFI	CTRYAG	4 cut(s)	764, 942, 1040, 1148
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BsuRI	GGCC	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	60, 166
BtsI	GCAGTG	2 cut(s)	307, 328
BtsIMutI	CAGTG	4 cut(s)	307, 328, 604, 782
Cac8I	GCNNGC	5 cut(s)	66, 106, 639, 669, 939
CaiI	CAGNNNCTG	2 cut(s)	221, 1147
CfoI	GCGC	2 cut(s)	418, 729
Cfr13I	GGNCC	3 cut(s)	22, 279, 922
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	3 cut(s)	343, 448, 982
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	8 cut(s)	69, 827, 887, 975, 993, 1023, 1029, 1179
DpnI	GATC	2 cut(s)	660, 951
DpnII	GATC	2 cut(s)	658, 949
EaeI	YGGCCR	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	830
Eco47I	GGWCC	3 cut(s)	22, 279, 922
Eco57I	CTGAAG	3 cut(s)	165, 198, 418
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	508, 520
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	346, 451, 985
FaqI	GGGAC	5 cut(s)	139, 232, 292, 369, 517
FatI	CATG	3 cut(s)	342, 447, 981
FauI	CCCGC	1 cut(s)	394
FokI	GGATG	2 cut(s)	67, 173
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	417, 728
GsaI	CCCAGC	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	992
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	2 cut(s)	418, 729
Hin1II	CATG	3 cut(s)	346, 451, 985
Hin6I	GCGC	2 cut(s)	416, 727
HinP1I	GCGC	2 cut(s)	416, 727
HindIII	AAGCTT	2 cut(s)	635, 935
HinfI	GANTC	8 cut(s)	86, 244, 485, 760, 815, 962, 1027, 1181
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	6 cut(s)	143, 480, 491, 498, 602, 1011
Hpy188I	TCNGA	9 cut(s)	145, 437, 739, 759, 890, 919, 954, 996, 1026
Hpy188III	TCNNGA	1 cut(s)	248
HpyAV	CCTTC	6 cut(s)	116, 140, 377, 513, 869, 981
HpyCH4III	ACNGT	5 cut(s)	263, 455, 531, 590, 786
HpyCH4IV	ACGT	1 cut(s)	928
HpyCH4V	TGCA	6 cut(s)	176, 472, 650, 671, 791, 1150
HpyF3I	CTNAG	8 cut(s)	69, 827, 887, 975, 993, 1023, 1029, 1179
HpySE526I	ACGT	1 cut(s)	928
Hsp92II	CATG	3 cut(s)	346, 451, 985
HspAI	GCGC	2 cut(s)	416, 727
Kzo9I	GATC	2 cut(s)	658, 949
LmnI	GCTCC	1 cut(s)	1011
LweI	GCATC	3 cut(s)	190, 714, 883
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	928
MaeIII	GTNAC	4 cut(s)	293, 486, 830, 1017
MalI	GATC	2 cut(s)	660, 951
MboI	GATC	2 cut(s)	658, 949
MboII	GAAGA	3 cut(s)	204, 625, 733
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	949
MluCI	AATT	9 cut(s)	46, 184, 289, 473, 541, 546, 556, 578, 618
MlyI	GAGTC	4 cut(s)	494, 754, 1021, 1190
MmeI	TCCRAC	2 cut(s)	723, 949
MnlI	CCTC	8 cut(s)	129, 244, 332, 372, 913, 990, 1032, 1180
MseI	TTAA	5 cut(s)	60, 78, 327, 390, 987
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	3 cut(s)	354, 510, 522
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	510, 522
NciI	CCSGG	1 cut(s)	354
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	2 cut(s)	658, 949
NlaIII	CATG	3 cut(s)	346, 451, 985
NlaIV	GGNNCC	2 cut(s)	280, 1001
NmeAIII	GCCGAG	2 cut(s)	496, 667
NmuCI	GTSAC	3 cut(s)	293, 486, 1017
PfeI	GAWTC	4 cut(s)	86, 244, 815, 962
PleI	GAGTC	4 cut(s)	493, 754, 1021, 1189
PpsI	GAGTC	4 cut(s)	493, 754, 1021, 1189
PshAI	GACNNNNGTC	1 cut(s)	529
Psp1406I	AACGTT	1 cut(s)	928
Psp6I	CCWGG	2 cut(s)	508, 520
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	2 cut(s)	508, 520
PspN4I	GGNNCC	2 cut(s)	280, 1001
PspPI	GGNCC	3 cut(s)	22, 279, 922
PstI	CTGCAG	1 cut(s)	1152
PstNI	CAGNNNCTG	2 cut(s)	221, 1147
PsuI	RGATCY	1 cut(s)	949
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SaqAI	TTAA	5 cut(s)	60, 78, 327, 390, 987
Sau3AI	GATC	2 cut(s)	658, 949
Sau96I	GGNCC	3 cut(s)	22, 279, 922
SchI	GAGTC	4 cut(s)	494, 754, 1021, 1190
ScrFI	CCNGG	3 cut(s)	354, 510, 522
SfaNI	GCATC	3 cut(s)	190, 714, 883
SfcI	CTRYAG	4 cut(s)	764, 942, 1040, 1148
SinI	GGWCC	3 cut(s)	22, 279, 922
Sse9I	AATT	9 cut(s)	46, 184, 289, 473, 541, 546, 556, 578, 618
SsiI	CCGC	3 cut(s)	119, 401, 500
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	352, 508, 520
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	5 cut(s)	263, 455, 531, 590, 786
TaiI	ACGT	1 cut(s)	931
TaqI	TCGA	1 cut(s)	427
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	9 cut(s)	46, 184, 289, 473, 541, 546, 556, 578, 618
TfiI	GAWTC	4 cut(s)	86, 244, 815, 962
Tru1I	TTAA	5 cut(s)	60, 78, 327, 390, 987
Tru9I	TTAA	5 cut(s)	60, 78, 327, 390, 987
TscAI	CASTG	4 cut(s)	307, 328, 604, 789
TseFI	GTSAC	3 cut(s)	293, 486, 1017
Tsp45I	GTSAC	3 cut(s)	293, 486, 1017
TspDTI	ATGAA	7 cut(s)	197, 324, 345, 359, 626, 645, 918
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	4 cut(s)	307, 328, 604, 789
VpaK11BI	GGWCC	3 cut(s)	22, 279, 922
XagI	CCTNNNNNAGG	1 cut(s)	507
XapI	RAATTY	4 cut(s)	46, 184, 556, 578
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.