Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Forward (+)

46536064 .. 46536913

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0314100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGCTCGACGCAATGCACACCTCTCTCCCCTCCCTCGCCGCCGATCCTCCTCCGCCGCCGCCTGCTAAGGCCTCCAGGGGCGCGATGAGGTCGGCGCACGTCAGAGGCGCGATGAAGATGAAGAAGAAGAAGAAGGCGGCGCAGGATGGCGGCAAAATGAAGGAGGAGGCCGCGAAAGGCGGCGGCGGAGGTCGGAGGTCAATGTCGACCAAGGAGGGGCGTTTCCGCGGCGTGAGGAAGCGGCCGTGGGGCCGATACGCCGCGGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGGAAGCGGCGCGTGCCTATGACGACGCCGCTCGGGGATTCCGCGGCGTAAGGGCCAAGACGAACTTCGACAATCCGGCTCCGCCGCAGCAGCACGCGCTCGTGATCGGGGGCAAGGAAGTGCTCTGGACCCCTCCGGTGCGCAAGAACGACTCTGTTCCGGCGCCGGCGGCTCCGGTGAGGTCGGAGTATAAGGGTTACAAGCTGGAGAATTTGGGCCCGGTGGTGAGCGAGCAGGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAAGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

213

Amino Acids

23.3

Weight (kDa)

10.32

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	75 - 120	7e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	467
AccB1I	GGYRCC	2 cut(s)	487, 628
AccBSI	CCGCTC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	209
AccII	CGCG	9 cut(s)	86, 113, 176, 231, 266, 276, 337, 369, 422
AclWI	GGATC	2 cut(s)	41, 272
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	535
AcyI	GRCGYC	3 cut(s)	351, 488, 629
AfiI	CCNNNNNNNGG	2 cut(s)	219, 300
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	77, 281
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 560, 592
AluBI	AGCT	1 cut(s)	529
AluI	AGCT	1 cut(s)	529
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	41, 272
Ama87I	CYCGRG	2 cut(s)	305, 357
AoxI	GGCC	6 cut(s)	72, 171, 245, 253, 378, 541
ApaI	GGGCCC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	412, 415
ApoI	RAATTY	1 cut(s)	535
Asp700I	GAANNNNTTC	1 cut(s)	602
AspS9I	GGNCC	7 cut(s)	253, 285, 309, 378, 453, 541, 542
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	514, 562
AvaI	CYCGRG	2 cut(s)	305, 357
AvaII	GGWCC	3 cut(s)	285, 309, 453
BaeGI	GKGCMC	1 cut(s)	545
BanI	GGYRCC	2 cut(s)	487, 628
BanII	GRGCYC	1 cut(s)	545
BauI	CACGAG	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	424, 427
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	3 cut(s)	232, 586, 616
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	2 cut(s)	79, 283
BcnI	CCSGG	1 cut(s)	545
BfoI	RGCGCY	3 cut(s)	8, 491, 632
Bme1390I	CCNGG	3 cut(s)	79, 283, 545
Bme18I	GGWCC	3 cut(s)	285, 309, 453
BmeT110I	CYCGRG	2 cut(s)	305, 357
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	7 cut(s)	253, 285, 309, 378, 453, 541, 542
BmiI	GGNNCC	8 cut(s)	254, 310, 405, 455, 489, 498, 543, 630
BmrFI	CCNGG	3 cut(s)	79, 283, 545
BpmI	CTGGAG	2 cut(s)	61, 551
Bpu10I	CCTNAGC	2 cut(s)	69, 324
BpuMI	CCSGG	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	3 cut(s)	351, 488, 629
BsaJI	CCNNGG	7 cut(s)	78, 213, 229, 248, 264, 281, 367
BsaWI	WCCGGW	2 cut(s)	460, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 300
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	79, 283
BseDI	CCNNGG	7 cut(s)	78, 213, 229, 248, 264, 281, 367
BseGI	GGATG	1 cut(s)	154
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	2 cut(s)	219, 300
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	2 cut(s)	42, 182
BseSI	GKGCMC	1 cut(s)	545
BseX3I	CGGCCG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	424, 427
Bsh1236I	CGCG	9 cut(s)	86, 113, 176, 231, 266, 276, 337, 369, 422
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	6 cut(s)	74, 173, 247, 255, 380, 543
BshNI	GGYRCC	2 cut(s)	487, 628
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	2 cut(s)	305, 357
BsiSI	CCGG	7 cut(s)	401, 461, 485, 491, 500, 545, 626
BslFI	GGGAC	2 cut(s)	277, 322
BslI	CCNNNNNNNGG	2 cut(s)	219, 300
BsmFI	GGGAC	2 cut(s)	277, 322
BsnI	GGCC	6 cut(s)	74, 173, 247, 255, 380, 543
BsoBI	CYCGRG	2 cut(s)	305, 357
Bsp120I	GGGCCC	1 cut(s)	541
Bsp1286I	GDGCHC	2 cut(s)	450, 545
Bsp143I	GATC	4 cut(s)	46, 277, 429, 613
Bsp68I	TCGCGA	1 cut(s)	276
BspANI	GGCC	6 cut(s)	74, 173, 247, 255, 380, 543
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	9 cut(s)	86, 113, 176, 231, 266, 276, 337, 369, 422
BspLI	GGNNCC	8 cut(s)	254, 310, 405, 455, 489, 498, 543, 630
BspPI	GGATC	2 cut(s)	41, 272
BspT107I	GGYRCC	2 cut(s)	487, 628
BsrBI	CCGCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	7 cut(s)	78, 213, 229, 248, 264, 281, 367
BssMI	GATC	4 cut(s)	46, 277, 429, 613
BssNI	GRCGYC	3 cut(s)	351, 488, 629
BssSI	CACGAG	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	425
Bst2UI	CCWGG	2 cut(s)	79, 283
BstACI	GRCGYC	3 cut(s)	351, 488, 629
BstC8I	GCNNGC	5 cut(s)	66, 339, 420, 492, 557
BstDEI	CTNAG	2 cut(s)	69, 324
BstDSI	CCRYGG	4 cut(s)	229, 248, 264, 367
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	9 cut(s)	86, 113, 176, 231, 266, 276, 337, 369, 422
BstH2I	RGCGCY	3 cut(s)	8, 491, 632
BstKTI	GATC	4 cut(s)	49, 280, 432, 616
BstMBI	GATC	4 cut(s)	46, 277, 429, 613
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 329, 338, 415, 421, 494
BstNI	CCWGG	2 cut(s)	79, 283
BstSCI	CCNGG	3 cut(s)	77, 281, 543
BstSLI	GKGCMC	1 cut(s)	545
BstUI	CGCG	9 cut(s)	86, 113, 176, 231, 266, 276, 337, 369, 422
BstV1I	GCAGC	2 cut(s)	424, 427
BstZI	CGGCCG	1 cut(s)	245
BsuRI	GGCC	6 cut(s)	74, 173, 247, 255, 380, 543
BtgI	CCRYGG	4 cut(s)	229, 248, 264, 367
BtgZI	GCGATG	2 cut(s)	101, 128
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BtuMI	TCGCGA	1 cut(s)	276
Cac8I	GCNNGC	5 cut(s)	66, 339, 420, 492, 557
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	7 cut(s)	253, 285, 309, 378, 453, 541, 542
Cfr42I	CCGCGG	3 cut(s)	232, 267, 370
CseI	GACGC	2 cut(s)	20, 359
DdeI	CTNAG	2 cut(s)	69, 324
DinI	GGCGCC	2 cut(s)	489, 630
DpnI	GATC	4 cut(s)	48, 279, 431, 615
DpnII	GATC	4 cut(s)	46, 277, 429, 613
EaeI	YGGCCR	1 cut(s)	245
EagI	CGGCCG	1 cut(s)	245
EciI	GGCGGA	4 cut(s)	45, 204, 396, 599
EclXI	CGGCCG	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	545
Eco47I	GGWCC	3 cut(s)	285, 309, 453
Eco52I	CGGCCG	1 cut(s)	245
Eco88I	CYCGRG	2 cut(s)	305, 357
EcoO109I	RGGNCCY	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	77, 281
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	545
EgeI	GGCGCC	2 cut(s)	489, 630
EheI	GGCGCC	2 cut(s)	489, 630
ErhI	CCWWGG	1 cut(s)	213
FaiI	YATR	2 cut(s)	345, 516
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	2 cut(s)	277, 322
FauI	CCCGC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	209
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	545
FspI	TGCGCA	1 cut(s)	467
GsuI	CTGGAG	2 cut(s)	61, 551
HaeII	RGCGCY	3 cut(s)	8, 491, 632
HaeIII	GGCC	6 cut(s)	74, 173, 247, 255, 380, 543
HapII	CCGG	7 cut(s)	401, 461, 485, 491, 500, 545, 626
HgaI	GACGC	2 cut(s)	20, 359
Hin1I	GRCGYC	3 cut(s)	351, 488, 629
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	4 cut(s)	271, 363, 476, 619
HpaII	CCGG	7 cut(s)	401, 461, 485, 491, 500, 545, 626
HphI	GGTGA	2 cut(s)	514, 562
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	4 cut(s)	107, 198, 511, 618
Hpy188III	TCNNGA	4 cut(s)	275, 307, 427, 451
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	2 cut(s)	14, 353
HpyAV	CCTTC	2 cut(s)	130, 157
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 329, 338, 415, 421, 494
HpyF3I	CTNAG	2 cut(s)	69, 324
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	3 cut(s)	351, 488, 629
KasI	GGCGCC	2 cut(s)	487, 628
KroI	GCCGGC	1 cut(s)	490
KroNI	GCCGGC	1 cut(s)	492
KspI	CCGCGG	3 cut(s)	232, 267, 370
Kzo9I	GATC	4 cut(s)	46, 277, 429, 613
LmnI	GCTCC	2 cut(s)	409, 502
Lsp1109I	GCAGC	2 cut(s)	424, 427
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	4 cut(s)	48, 279, 431, 615
MbiI	CCGCTC	1 cut(s)	356
MboI	GATC	4 cut(s)	46, 277, 429, 613
MboII	GAAGA	9 cut(s)	130, 136, 139, 142, 145, 577, 580, 607, 614
MhlI	GDGCHC	2 cut(s)	450, 545
MluCI	AATT	1 cut(s)	535
Mly113I	GGCGCC	2 cut(s)	488, 629
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	2 cut(s)	176, 489
MreI	CGCCGGCG	1 cut(s)	490
MroNI	GCCGGC	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	602
MspA1I	CMGCKG	3 cut(s)	231, 266, 369
MspI	CCGG	7 cut(s)	401, 461, 485, 491, 500, 545, 626
MspR9I	CCNGG	3 cut(s)	79, 283, 545
MvaI	CCWGG	2 cut(s)	79, 283
MvnI	CGCG	9 cut(s)	86, 113, 176, 231, 266, 276, 337, 369, 422
MwoI	GCNNNNNNNGC	6 cut(s)	11, 329, 338, 415, 421, 494
NaeI	GCCGGC	1 cut(s)	492
NarI	GGCGCC	2 cut(s)	488, 629
NciI	CCSGG	1 cut(s)	545
NdeII	GATC	4 cut(s)	46, 277, 429, 613
NgoMIV	GCCGGC	1 cut(s)	490
NlaIV	GGNNCC	8 cut(s)	254, 310, 405, 455, 489, 498, 543, 630
NruI	TCGCGA	1 cut(s)	276
NsbI	TGCGCA	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	3 cut(s)	271, 363, 619
PflFI	GACNNNGTC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	470
PluTI	GGCGCC	2 cut(s)	491, 632
PpsI	GAGTC	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	77, 281
PspGI	CCWGG	2 cut(s)	77, 281
PspN4I	GGNNCC	8 cut(s)	254, 310, 405, 455, 489, 498, 543, 630
PspOMI	GGGCCC	1 cut(s)	541
PspPI	GGNCC	7 cut(s)	253, 285, 309, 378, 453, 541, 542
PspPPI	RGGWCCY	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	289
RruI	TCGCGA	1 cut(s)	276
SacII	CCGCGG	3 cut(s)	232, 267, 370
SalI	GTCGAC	1 cut(s)	208
Sau3AI	GATC	4 cut(s)	46, 277, 429, 613
Sau96I	GGNCC	7 cut(s)	253, 285, 309, 378, 453, 541, 542
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	3 cut(s)	79, 283, 545
SduI	GDGCHC	2 cut(s)	450, 545
SetI	ASST	8 cut(s)	26, 95, 105, 196, 203, 314, 509, 531
SfoI	GGCGCC	2 cut(s)	489, 630
Sfr303I	CCGCGG	3 cut(s)	232, 267, 370
SgrAI	CRCCGGYG	1 cut(s)	490
SgrBI	CCGCGG	3 cut(s)	232, 267, 370
SinI	GGWCC	3 cut(s)	285, 309, 453
Sse9I	AATT	1 cut(s)	535
SseBI	AGGCCT	1 cut(s)	74
SspDI	GGCGCC	2 cut(s)	487, 628
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	77, 281, 543
StyI	CCWWGG	1 cut(s)	213
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	9, 209, 393
TasI	AATT	1 cut(s)	535
TfiI	GAWTC	3 cut(s)	271, 363, 619
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	2 cut(s)	412, 415
TspDTI	ATGAA	4 cut(s)	131, 137, 176, 587
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	289
VpaK11BI	GGWCC	3 cut(s)	285, 309, 453
XapI	RAATTY	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.