RLG00000011172
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
7341161 .. 7344223
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011172

Sequence Viewer

Length: 1644 bp
ATGGAGGGCAGTGACGAGACGGGCAGGTTTGCGAGACCACATCATCATTTAGACATTCCCAATTTCAGTTCAGGTCAGATAGGTTTACCCATGAGGCAGTTATCGCCAAGCCCGAGTTCCGAGAATTCCAAAAGACTTGGTATCCCTCCTTCCCACCCTAACAACCCTATGAGGCCTCAATTGCCTTCATGGCAAATGGGTTCTCAGAATTTGAGCTCAGGAGGTTCGGCTCATTCAAGGTCTTTGTCTCAGCCATCTTTTTTCTCACTTGATAGTCTGCCTCCTTTGAGTCCTTTGACGTCGTACCGGGAGCCCTCGGCTTCTTCGCTTTCGGACCCGAATTCGGTGGATGTTTCCATGGAGGAGTCCGTGGTGAACTCTCATGCTCAGTCGCTTCGGTCTCCGGTTACTGACAGCAATCCTTTTTGGGCCGGCGACGGGCTTCCTCCGAGGAGGGGACACAGGAGGTCCAACAGTGATGTGCCGTTGGGATTCTCGGCTGTGATTCAGTCTTCGCCGCAGTTGATTCCGATTGGGCGCAGGGCTAGCTCTGATGGGAAGGAGAGTTTGGGGATTGCGAAGCCGGGACAGCTGGTGAGGCAAGGATCAAATGGGGATGGGAGCAACAATGGTGAAGTAATGGGCGACAGAAAATCGGGTGGGGAGGTTGTGGATGATTTGTTTAGTGCTTATATGAATTTAGAGAACATTGATAAAATGAACTCGCCCGGTGGTGCCGAGGATAAAGATTTGGATAGTAGGGCGAGTGGCTCCAAGACAAATGGGGGTGAGAGTAGTGATAATGAGGTGGAGAGTGGGCTAAATGGGAAGTGGTCGGGTTCAGGTTTTTTGAATGAGAAGAGGGAAGGGGTGAAGAGGACTGCTGGTGGAGATGTTGCGCGCACTGTCCGACATTGTAGGAGTGTTTCGATGGATAGTTACATGGATAATTTGAATTTTGATGAAGAACTGCTGAAGCCTCTACCGCTGGGAAGTCAAGTTGGTCAGCAATCACCTAGTGCTTCGGTAGATGGGAACTCAGCAAAGTTCAGCATGGAGTTTGGAAGTGGTGAGTTCAATGCAATTGAGCTGAAAAAGATTATGGAAAGTGAAAAGCTTTCGGAAATAGCTGTATCAGATCCTAAACGTGCAAAGAGGATTTTAGCTAACCGACAGTCAGCTGCTCGTTCCAAGGAGCGGAAGATGCGATACATTGTAGAATTGGAACACAAGGTGCAAACCCTGCAGACTGAGGCAACCACTTTATCTGCCCAGGTTACTAAGTTGCAGAGGGACTCTATGGGTCTTACAAGTGAGAACAACGAGTTGAAATTTCGTCTTCAAGCCTTGGAGCAACAGGCTCAACTTAAAGATGCTTTAAACGAGGCCTTGACTGGAGAGGTCCAGCGACTTAGAATTTCTGCTGCAGAACTCGGAGGAGAAGGCAACCTTTCAAACCGCATGTCCCAGCAGCTTTCAATTAATCAACAAATGCTCCAACTACAGCAACTCAACCTCTACCAGATGCAGCAGCAGCCGCAGCAGCAGCAAACTCAACAACAGATAATGCAGCAGTCACAGCAAAATCAACTACCTTCCCATCAGCAGAATGGCAATGCTGCTAAGCATGAGTCAATGCAATAG

Protein Analysis

548

Amino Acids

59.66

Weight (kDa)

6.18

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 379 - 431 2.3e-08 Basic region leucine zipper
bZIP_1 PF00170 382 - 440 4.6e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 15
AccB1I GGYRCC 1 cut(s) 734
AccBSI CCGCTC 1 cut(s) 1198
AccII CGCG 1 cut(s) 901
AciI CCGC 5 cut(s) 518, 986, 1198, 1459, 1538
AclWI GGATC 2 cut(s) 613, 1133
AcsI RAATTY 7 cut(s) 124, 208, 340, 697, 955, 1331, 1416
AcuI CTGAAG 1 cut(s) 995
AcyI GRCGYC 1 cut(s) 299
AdeI CACNNNGTG 2 cut(s) 1019, 1234
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 4 cut(s) 343, 438, 455, 1197
AgsI TTSAA 8 cut(s) 237, 853, 955, 1078, 1330, 1343, 1455, 1479
AjnI CCWGG 1 cut(s) 1272
AjuI GAANNNNNNNTTGG 4 cut(s) 100, 132, 551, 583
AluBI AGCT 9 cut(s) 216, 549, 592, 1090, 1117, 1130, 1166, 1181, 1474
AluI AGCT 9 cut(s) 216, 549, 592, 1090, 1117, 1130, 1166, 1181, 1474
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 4 cut(s) 11, 28, 252, 405
AlwI GGATC 2 cut(s) 613, 1133
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 3 cut(s) 173, 429, 1386
ApoI RAATTY 7 cut(s) 124, 208, 340, 697, 955, 1331, 1416
ArsI GACNNNNNNTTYG 2 cut(s) 1448, 1480
AseI ATTAAT 1 cut(s) 1482
AspLEI GCGC 3 cut(s) 540, 901, 903
AspS9I GGNCC 4 cut(s) 334, 429, 468, 1402
AsuC2I CCSGG 3 cut(s) 308, 585, 729
AsuHPI GGTGA 7 cut(s) 385, 607, 644, 800, 883, 1005, 1082
AsuNHI GCTAGC 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 3 cut(s) 334, 468, 1402
BanI GGYRCC 1 cut(s) 734
BanII GRGCYC 2 cut(s) 218, 315
BarI GAAGNNNNNNTAC 4 cut(s) 133, 165, 1193, 1225
BbsI GAAGAC 2 cut(s) 504, 1331
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 6 cut(s) 262, 548, 611, 925, 1025, 1608
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 1 cut(s) 1274
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 3 cut(s) 308, 585, 729
BcoDI GTCTC 4 cut(s) 11, 28, 252, 405
BfaI CTAG 2 cut(s) 546, 1017
BfmI CTRYAG 3 cut(s) 1244, 1425, 1502
BfuAI ACCTGC 1 cut(s) 15
BfuI GTATCC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 190
BlpI GCTNAGC 1 cut(s) 1623
Bme1390I CCNGG 4 cut(s) 308, 585, 729, 1274
Bme18I GGWCC 3 cut(s) 334, 468, 1402
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 4 cut(s) 334, 429, 468, 1402
BmiI GGNNCC 4 cut(s) 312, 336, 736, 772
BmrFI CCNGG 4 cut(s) 308, 585, 729, 1274
BmsI GCATC 3 cut(s) 1194, 1363, 1515
BmtI GCTAGC 1 cut(s) 549
BpiI GAAGAC 2 cut(s) 504, 1331
BpmI CTGGAG 1 cut(s) 1416
Bpu10I CCTNAGC 1 cut(s) 217
Bpu1102I GCTNAGC 1 cut(s) 1623
BpuMI CCSGG 3 cut(s) 308, 585, 729
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 2 cut(s) 28, 405
BsaJI CCNNGG 8 cut(s) 315, 357, 369, 449, 738, 1191, 1272, 1347
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 1479, 1509
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 438, 455, 1197
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 1399
Bse3DI GCAATG 1 cut(s) 1621
BseBI CCWGG 1 cut(s) 1274
BseDI CCNNGG 8 cut(s) 315, 357, 369, 449, 738, 1191, 1272, 1347
BseGI GGATG 3 cut(s) 355, 622, 679
BseLI CCNNNNNNNGG 4 cut(s) 343, 438, 455, 1197
BseMI GCAATG 1 cut(s) 1621
BseMII CTCAG 6 cut(s) 218, 231, 263, 401, 1053, 1242
BseNI ACTGG 1 cut(s) 1399
BsePI GCGCGC 1 cut(s) 899
BseRI GAGGAG 3 cut(s) 377, 466, 1452
BseYI CCCAGC 2 cut(s) 988, 1467
Bsh1236I CGCG 1 cut(s) 901
BshFI GGCC 3 cut(s) 175, 431, 1388
BshNI GGYRCC 1 cut(s) 734
BsiHKAI GWGCWC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 5 cut(s) 307, 404, 432, 584, 729
BslFI GGGAC 4 cut(s) 471, 600, 1307, 1450
BslI CCNNNNNNNGG 4 cut(s) 343, 438, 455, 1197
BsmAI GTCTC 4 cut(s) 11, 28, 252, 405
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 4 cut(s) 471, 600, 1307, 1450
BsnI GGCC 3 cut(s) 175, 431, 1388
Bso31I GGTCTC 2 cut(s) 28, 405
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 218, 315
Bsp143I GATC 2 cut(s) 605, 1138
Bsp1720I GCTNAGC 1 cut(s) 1623
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 5 cut(s) 518, 986, 1198, 1459, 1538
BspANI GGCC 3 cut(s) 175, 431, 1388
BspCNI CTCAG 6 cut(s) 217, 230, 262, 400, 1052, 1243
BspFNI CGCG 1 cut(s) 901
BspLI GGNNCC 4 cut(s) 312, 336, 736, 772
BspMAI CTGCAG 2 cut(s) 1248, 1429
BspMI ACCTGC 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 2 cut(s) 613, 1133
BspT107I GGYRCC 1 cut(s) 734
BspTNI GGTCTC 2 cut(s) 28, 405
BsrBI CCGCTC 1 cut(s) 1198
BsrDI GCAATG 1 cut(s) 1621
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 1 cut(s) 1399
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 8 cut(s) 315, 357, 369, 449, 738, 1191, 1272, 1347
BssHII GCGCGC 1 cut(s) 899
BssMI GATC 2 cut(s) 605, 1138
BssNI GRCGYC 1 cut(s) 299
BssT1I CCWWGG 3 cut(s) 357, 1191, 1347
Bst2UI CCWGG 1 cut(s) 1274
Bst4CI ACNGT 3 cut(s) 476, 907, 1176
Bst6I CTCTTC 2 cut(s) 854, 869
BstACI GRCGYC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 1243
BstC8I GCNNGC 3 cut(s) 433, 547, 901
BstDEI CTNAG 9 cut(s) 204, 217, 249, 387, 1039, 1251, 1281, 1412, 1623
BstDSI CCRYGG 2 cut(s) 357, 369
BstF5I GGATG 3 cut(s) 355, 622, 679
BstFNI CGCG 1 cut(s) 901
BstHHI GCGC 3 cut(s) 540, 901, 903
BstKTI GATC 2 cut(s) 608, 1141
BstMAI GTCTC 4 cut(s) 11, 28, 252, 405
BstMBI GATC 2 cut(s) 605, 1138
BstNI CCWGG 1 cut(s) 1274
BstNSI RCATGY 1 cut(s) 1465
BstSCI CCNGG 4 cut(s) 306, 583, 727, 1272
BstSFI CTRYAG 3 cut(s) 1244, 1425, 1502
BstUI CGCG 1 cut(s) 901
BstV2I GAAGAC 2 cut(s) 504, 1331
BstX2I RGATCY 1 cut(s) 1138
BstYI RGATCY 1 cut(s) 1138
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 3 cut(s) 175, 431, 1388
BtgI CCRYGG 2 cut(s) 357, 369
BtsCI GGATG 3 cut(s) 355, 622, 679
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 481, 903
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 3 cut(s) 433, 547, 901
CfoI GCGC 3 cut(s) 540, 901, 903
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 4 cut(s) 334, 429, 468, 1402
Csp6I GTAC 1 cut(s) 304
CviAII CATG 8 cut(s) 91, 189, 358, 383, 943, 1054, 1462, 1628
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 9 cut(s) 204, 217, 249, 387, 1039, 1251, 1281, 1412, 1623
DpnI GATC 2 cut(s) 607, 1140
DpnII GATC 2 cut(s) 605, 1138
DraI TTTAAA 1 cut(s) 1380
DraIII CACNNNGTG 2 cut(s) 1019, 1234
Eam1104I CTCTTC 2 cut(s) 854, 869
EarI CTCTTC 2 cut(s) 854, 869
Ecl136II GAGCTC 1 cut(s) 216
Eco130I CCWWGG 3 cut(s) 357, 1191, 1347
Eco147I AGGCCT 2 cut(s) 175, 1388
Eco24I GRGCYC 2 cut(s) 218, 315
Eco31I GGTCTC 2 cut(s) 28, 405
Eco47I GGWCC 3 cut(s) 334, 468, 1402
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 995
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 216
EcoRI GAATTC 2 cut(s) 124, 340
EcoRII CCWGG 1 cut(s) 1272
EcoT14I CCWWGG 3 cut(s) 357, 1191, 1347
EcoT38I GRGCYC 2 cut(s) 218, 315
ErhI CCWWGG 3 cut(s) 357, 1191, 1347
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 8 cut(s) 94, 192, 361, 386, 946, 1057, 1465, 1631
FalI AAGNNNNNCTT 2 cut(s) 1434, 1466
FaqI GGGAC 4 cut(s) 471, 600, 1307, 1450
FatI CATG 8 cut(s) 90, 188, 357, 382, 942, 1053, 1461, 1627
FokI GGATG 3 cut(s) 362, 629, 686
FriOI GRGCYC 2 cut(s) 218, 315
FspBI CTAG 2 cut(s) 546, 1017
GlaI GCGC 3 cut(s) 539, 900, 902
GsaI CCCAGC 2 cut(s) 992, 1471
GsuI CTGGAG 1 cut(s) 1416
HaeIII GGCC 3 cut(s) 175, 431, 1388
HapII CCGG 5 cut(s) 307, 404, 432, 584, 729
HhaI GCGC 3 cut(s) 540, 901, 903
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 8 cut(s) 94, 192, 361, 386, 946, 1057, 1465, 1631
Hin6I GCGC 3 cut(s) 538, 899, 901
HinP1I GCGC 3 cut(s) 538, 899, 901
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 7 cut(s) 289, 365, 492, 505, 526, 1295, 1631
HpaII CCGG 5 cut(s) 307, 404, 432, 584, 729
HphI GGTGA 7 cut(s) 385, 607, 644, 800, 883, 1005, 1082
Hpy166II GTNNAC 2 cut(s) 86, 376
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 2 cut(s) 86, 376
Hpy99I CGWCG 2 cut(s) 304, 440
HpyAV CCTTC 6 cut(s) 159, 195, 553, 860, 1436, 1605
HpyCH4III ACNGT 3 cut(s) 476, 907, 1176
HpyCH4IV ACGT 2 cut(s) 299, 1147
HpyCH4V TGCA 9 cut(s) 1082, 1151, 1237, 1246, 1288, 1427, 1528, 1570, 1639
HpyF3I CTNAG 9 cut(s) 204, 217, 249, 387, 1039, 1251, 1281, 1412, 1623
HpySE526I ACGT 2 cut(s) 299, 1147
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 8 cut(s) 94, 192, 361, 386, 946, 1057, 1465, 1631
HspAI GCGC 3 cut(s) 538, 899, 901
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Kzo9I GATC 2 cut(s) 605, 1138
LmnI GCTCC 6 cut(s) 310, 621, 776, 1195, 1351, 1500
LweI GCATC 3 cut(s) 1194, 1363, 1515
MaeI CTAG 2 cut(s) 546, 1017
MaeII ACGT 2 cut(s) 299, 1147
MaeIII GTNAC 5 cut(s) 11, 406, 938, 1276, 1575
MalI GATC 2 cut(s) 607, 1140
MbiI CCGCTC 1 cut(s) 1198
MboI GATC 2 cut(s) 605, 1138
MboII GAAGA 7 cut(s) 315, 504, 871, 886, 977, 1213, 1331
MfeI CAATTG 2 cut(s) 179, 1083
MflI RGATCY 1 cut(s) 1138
MhlI GDGCHC 2 cut(s) 218, 315
MlyI GAGTC 4 cut(s) 298, 374, 1289, 1640
MmeI TCCRAC 3 cut(s) 495, 934, 1522
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 3 cut(s) 1368, 1379, 1482
MspA1I CMGCKG 3 cut(s) 592, 988, 1181
MspI CCGG 5 cut(s) 307, 404, 432, 584, 729
MspR9I CCNGG 4 cut(s) 308, 585, 729, 1274
MunI CAATTG 2 cut(s) 179, 1083
MvaI CCWGG 1 cut(s) 1274
MvnI CGCG 1 cut(s) 901
NaeI GCCGGC 1 cut(s) 433
NciI CCSGG 3 cut(s) 308, 585, 729
NcoI CCATGG 1 cut(s) 357
NdeII GATC 2 cut(s) 605, 1138
NgoMIV GCCGGC 1 cut(s) 431
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 8 cut(s) 94, 192, 361, 386, 946, 1057, 1465, 1631
NlaIV GGNNCC 4 cut(s) 312, 336, 736, 772
NmeAIII GCCGAG 3 cut(s) 296, 476, 763
NmuCI GTSAC 2 cut(s) 11, 1575
NspI RCATGY 1 cut(s) 1465
PauI GCGCGC 1 cut(s) 899
PceI AGGCCT 2 cut(s) 175, 1388
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PdiI GCCGGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 492, 505, 526
PleI GAGTC 4 cut(s) 297, 373, 1289, 1639
PpsI GAGTC 4 cut(s) 297, 373, 1289, 1639
PshBI ATTAAT 1 cut(s) 1482
Psp124BI GAGCTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 1272
PspFI CCCAGC 2 cut(s) 988, 1467
PspGI CCWGG 1 cut(s) 1272
PspN4I GGNNCC 4 cut(s) 312, 336, 736, 772
PspPI GGNCC 4 cut(s) 334, 429, 468, 1402
PstI CTGCAG 2 cut(s) 1248, 1429
PsuI RGATCY 1 cut(s) 1138
PteI GCGCGC 1 cut(s) 899
PvuII CAGCTG 2 cut(s) 592, 1181
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SacI GAGCTC 1 cut(s) 218
SaqAI TTAA 3 cut(s) 1368, 1379, 1482
Sau3AI GATC 2 cut(s) 605, 1138
Sau96I GGNCC 4 cut(s) 334, 429, 468, 1402
SchI GAGTC 4 cut(s) 298, 374, 1289, 1640
ScrFI CCNGG 4 cut(s) 308, 585, 729, 1274
SduI GDGCHC 2 cut(s) 218, 315
SfaNI GCATC 3 cut(s) 1194, 1363, 1515
SfcI CTRYAG 3 cut(s) 1244, 1425, 1502
SinI GGWCC 3 cut(s) 334, 468, 1402
SseBI AGGCCT 2 cut(s) 175, 1388
SsiI CCGC 5 cut(s) 518, 986, 1198, 1459, 1538
SspMI CTAG 2 cut(s) 546, 1017
SstI GAGCTC 1 cut(s) 218
StuI AGGCCT 2 cut(s) 175, 1388
StyD4I CCNGG 4 cut(s) 306, 583, 727, 1272
StyI CCWWGG 3 cut(s) 357, 1191, 1347
TaaI ACNGT 3 cut(s) 476, 907, 1176
TaiI ACGT 2 cut(s) 302, 1150
TaqI TCGA 1 cut(s) 929
TaqII GACCGA 1 cut(s) 387
TauI GCSGC 2 cut(s) 520, 1540
TfiI GAWTC 3 cut(s) 492, 505, 526
Tru1I TTAA 3 cut(s) 1368, 1379, 1482
Tru9I TTAA 3 cut(s) 1368, 1379, 1482
TscAI CASTG 3 cut(s) 16, 481, 910
TseFI GTSAC 2 cut(s) 11, 1575
Tsp45I GTSAC 2 cut(s) 11, 1575
TspDTI ATGAA 4 cut(s) 177, 710, 734, 978
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 3 cut(s) 16, 481, 910
VpaK11BI GGWCC 3 cut(s) 334, 468, 1402
VspI ATTAAT 1 cut(s) 1482
XapI RAATTY 7 cut(s) 124, 208, 340, 697, 955, 1331, 1416
XceI RCATGY 1 cut(s) 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 1607
XspI CTAG 2 cut(s) 546, 1017
ZraI GACGTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.