transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900 |
| fragaria_vesca | FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831 |
| malus_domestica | MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1 |
| prunus_persica | Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1 |
| pyrus_communis | pycom08g01400 pycom08g01410 pycom15g01300 |
| rosa_chinensis | RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431 |
| rosa_laevigata | RLG00000011172 RLG00000013914 |
| rosa_multiflora | Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165790 Rroxscaffold_7G00199840 |
| rosa_rugosa | Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200 |
| rosa_samantha | Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300 |
| rosa_wichuraiana | Rw6G013910 Rw6G036950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 302 |
| Acc36I | ACCTGC | 1 cut(s) | 15 |
| AccB1I | GGYRCC | 1 cut(s) | 734 |
| AccBSI | CCGCTC | 1 cut(s) | 1198 |
| AccII | CGCG | 1 cut(s) | 901 |
| AciI | CCGC | 5 cut(s) | 518, 986, 1198, 1459, 1538 |
| AclWI | GGATC | 2 cut(s) | 613, 1133 |
| AcsI | RAATTY | 7 cut(s) | 124, 208, 340, 697, 955, 1331, 1416 |
| AcuI | CTGAAG | 1 cut(s) | 995 |
| AcyI | GRCGYC | 1 cut(s) | 299 |
| AdeI | CACNNNGTG | 2 cut(s) | 1019, 1234 |
| AfaI | GTAC | 1 cut(s) | 305 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 343, 438, 455, 1197 |
| AgsI | TTSAA | 8 cut(s) | 237, 853, 955, 1078, 1330, 1343, 1455, 1479 |
| AjnI | CCWGG | 1 cut(s) | 1272 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 100, 132, 551, 583 |
| AluBI | AGCT | 9 cut(s) | 216, 549, 592, 1090, 1117, 1130, 1166, 1181, 1474 |
| AluI | AGCT | 9 cut(s) | 216, 549, 592, 1090, 1117, 1130, 1166, 1181, 1474 |
| Alw21I | GWGCWC | 1 cut(s) | 218 |
| Alw26I | GTCTC | 4 cut(s) | 11, 28, 252, 405 |
| AlwI | GGATC | 2 cut(s) | 613, 1133 |
| Ama87I | CYCGRG | 1 cut(s) | 112 |
| AoxI | GGCC | 3 cut(s) | 173, 429, 1386 |
| ApoI | RAATTY | 7 cut(s) | 124, 208, 340, 697, 955, 1331, 1416 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1448, 1480 |
| AseI | ATTAAT | 1 cut(s) | 1482 |
| AspLEI | GCGC | 3 cut(s) | 540, 901, 903 |
| AspS9I | GGNCC | 4 cut(s) | 334, 429, 468, 1402 |
| AsuC2I | CCSGG | 3 cut(s) | 308, 585, 729 |
| AsuHPI | GGTGA | 7 cut(s) | 385, 607, 644, 800, 883, 1005, 1082 |
| AsuNHI | GCTAGC | 1 cut(s) | 545 |
| AvaI | CYCGRG | 1 cut(s) | 112 |
| AvaII | GGWCC | 3 cut(s) | 334, 468, 1402 |
| BanI | GGYRCC | 1 cut(s) | 734 |
| BanII | GRGCYC | 2 cut(s) | 218, 315 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 133, 165, 1193, 1225 |
| BbsI | GAAGAC | 2 cut(s) | 504, 1331 |
| Bbv12I | GWGCWC | 1 cut(s) | 218 |
| BccI | CCATC | 6 cut(s) | 262, 548, 611, 925, 1025, 1608 |
| BceAI | ACGGC | 1 cut(s) | 469 |
| BciT130I | CCWGG | 1 cut(s) | 1274 |
| BciVI | GTATCC | 1 cut(s) | 152 |
| BcnI | CCSGG | 3 cut(s) | 308, 585, 729 |
| BcoDI | GTCTC | 4 cut(s) | 11, 28, 252, 405 |
| BfaI | CTAG | 2 cut(s) | 546, 1017 |
| BfmI | CTRYAG | 3 cut(s) | 1244, 1425, 1502 |
| BfuAI | ACCTGC | 1 cut(s) | 15 |
| BfuI | GTATCC | 1 cut(s) | 152 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 190 |
| BlpI | GCTNAGC | 1 cut(s) | 1623 |
| Bme1390I | CCNGG | 4 cut(s) | 308, 585, 729, 1274 |
| Bme18I | GGWCC | 3 cut(s) | 334, 468, 1402 |
| BmeT110I | CYCGRG | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 4 cut(s) | 334, 429, 468, 1402 |
| BmiI | GGNNCC | 4 cut(s) | 312, 336, 736, 772 |
| BmrFI | CCNGG | 4 cut(s) | 308, 585, 729, 1274 |
| BmsI | GCATC | 3 cut(s) | 1194, 1363, 1515 |
| BmtI | GCTAGC | 1 cut(s) | 549 |
| BpiI | GAAGAC | 2 cut(s) | 504, 1331 |
| BpmI | CTGGAG | 1 cut(s) | 1416 |
| Bpu10I | CCTNAGC | 1 cut(s) | 217 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1623 |
| BpuMI | CCSGG | 3 cut(s) | 308, 585, 729 |
| BsaHI | GRCGYC | 1 cut(s) | 299 |
| BsaI | GGTCTC | 2 cut(s) | 28, 405 |
| BsaJI | CCNNGG | 8 cut(s) | 315, 357, 369, 449, 738, 1191, 1272, 1347 |
| BsaWI | WCCGGW | 1 cut(s) | 403 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1479, 1509 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 343, 438, 455, 1197 |
| Bse118I | RCCGGY | 1 cut(s) | 431 |
| Bse1I | ACTGG | 1 cut(s) | 1399 |
| Bse3DI | GCAATG | 1 cut(s) | 1621 |
| BseBI | CCWGG | 1 cut(s) | 1274 |
| BseDI | CCNNGG | 8 cut(s) | 315, 357, 369, 449, 738, 1191, 1272, 1347 |
| BseGI | GGATG | 3 cut(s) | 355, 622, 679 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 343, 438, 455, 1197 |
| BseMI | GCAATG | 1 cut(s) | 1621 |
| BseMII | CTCAG | 6 cut(s) | 218, 231, 263, 401, 1053, 1242 |
| BseNI | ACTGG | 1 cut(s) | 1399 |
| BsePI | GCGCGC | 1 cut(s) | 899 |
| BseRI | GAGGAG | 3 cut(s) | 377, 466, 1452 |
| BseYI | CCCAGC | 2 cut(s) | 988, 1467 |
| Bsh1236I | CGCG | 1 cut(s) | 901 |
| BshFI | GGCC | 3 cut(s) | 175, 431, 1388 |
| BshNI | GGYRCC | 1 cut(s) | 734 |
| BsiHKAI | GWGCWC | 1 cut(s) | 218 |
| BsiHKCI | CYCGRG | 1 cut(s) | 112 |
| BsiSI | CCGG | 5 cut(s) | 307, 404, 432, 584, 729 |
| BslFI | GGGAC | 4 cut(s) | 471, 600, 1307, 1450 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 343, 438, 455, 1197 |
| BsmAI | GTCTC | 4 cut(s) | 11, 28, 252, 405 |
| BsmBI | CGTCTC | 1 cut(s) | 11 |
| BsmFI | GGGAC | 4 cut(s) | 471, 600, 1307, 1450 |
| BsnI | GGCC | 3 cut(s) | 175, 431, 1388 |
| Bso31I | GGTCTC | 2 cut(s) | 28, 405 |
| BsoBI | CYCGRG | 1 cut(s) | 112 |
| Bsp1286I | GDGCHC | 2 cut(s) | 218, 315 |
| Bsp143I | GATC | 2 cut(s) | 605, 1138 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1623 |
| Bsp19I | CCATGG | 1 cut(s) | 357 |
| BspACI | CCGC | 5 cut(s) | 518, 986, 1198, 1459, 1538 |
| BspANI | GGCC | 3 cut(s) | 175, 431, 1388 |
| BspCNI | CTCAG | 6 cut(s) | 217, 230, 262, 400, 1052, 1243 |
| BspFNI | CGCG | 1 cut(s) | 901 |
| BspLI | GGNNCC | 4 cut(s) | 312, 336, 736, 772 |
| BspMAI | CTGCAG | 2 cut(s) | 1248, 1429 |
| BspMI | ACCTGC | 1 cut(s) | 15 |
| BspOI | GCTAGC | 1 cut(s) | 549 |
| BspPI | GGATC | 2 cut(s) | 613, 1133 |
| BspT107I | GGYRCC | 1 cut(s) | 734 |
| BspTNI | GGTCTC | 2 cut(s) | 28, 405 |
| BsrBI | CCGCTC | 1 cut(s) | 1198 |
| BsrDI | GCAATG | 1 cut(s) | 1621 |
| BsrFI | RCCGGY | 1 cut(s) | 431 |
| BsrI | ACTGG | 1 cut(s) | 1399 |
| BssAI | RCCGGY | 1 cut(s) | 431 |
| BssECI | CCNNGG | 8 cut(s) | 315, 357, 369, 449, 738, 1191, 1272, 1347 |
| BssHII | GCGCGC | 1 cut(s) | 899 |
| BssMI | GATC | 2 cut(s) | 605, 1138 |
| BssNI | GRCGYC | 1 cut(s) | 299 |
| BssT1I | CCWWGG | 3 cut(s) | 357, 1191, 1347 |
| Bst2UI | CCWGG | 1 cut(s) | 1274 |
| Bst4CI | ACNGT | 3 cut(s) | 476, 907, 1176 |
| Bst6I | CTCTTC | 2 cut(s) | 854, 869 |
| BstACI | GRCGYC | 1 cut(s) | 299 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1243 |
| BstC8I | GCNNGC | 3 cut(s) | 433, 547, 901 |
| BstDEI | CTNAG | 9 cut(s) | 204, 217, 249, 387, 1039, 1251, 1281, 1412, 1623 |
| BstDSI | CCRYGG | 2 cut(s) | 357, 369 |
| BstF5I | GGATG | 3 cut(s) | 355, 622, 679 |
| BstFNI | CGCG | 1 cut(s) | 901 |
| BstHHI | GCGC | 3 cut(s) | 540, 901, 903 |
| BstKTI | GATC | 2 cut(s) | 608, 1141 |
| BstMAI | GTCTC | 4 cut(s) | 11, 28, 252, 405 |
| BstMBI | GATC | 2 cut(s) | 605, 1138 |
| BstNI | CCWGG | 1 cut(s) | 1274 |
| BstNSI | RCATGY | 1 cut(s) | 1465 |
| BstSCI | CCNGG | 4 cut(s) | 306, 583, 727, 1272 |
| BstSFI | CTRYAG | 3 cut(s) | 1244, 1425, 1502 |
| BstUI | CGCG | 1 cut(s) | 901 |
| BstV2I | GAAGAC | 2 cut(s) | 504, 1331 |
| BstX2I | RGATCY | 1 cut(s) | 1138 |
| BstYI | RGATCY | 1 cut(s) | 1138 |
| BsuI | GTATCC | 1 cut(s) | 152 |
| BsuRI | GGCC | 3 cut(s) | 175, 431, 1388 |
| BtgI | CCRYGG | 2 cut(s) | 357, 369 |
| BtsCI | GGATG | 3 cut(s) | 355, 622, 679 |
| BtsI | GCAGTG | 1 cut(s) | 16 |
| BtsIMutI | CAGTG | 3 cut(s) | 16, 481, 903 |
| BveI | ACCTGC | 1 cut(s) | 15 |
| Cac8I | GCNNGC | 3 cut(s) | 433, 547, 901 |
| CfoI | GCGC | 3 cut(s) | 540, 901, 903 |
| Cfr10I | RCCGGY | 1 cut(s) | 431 |
| Cfr13I | GGNCC | 4 cut(s) | 334, 429, 468, 1402 |
| Csp6I | GTAC | 1 cut(s) | 304 |
| CviAII | CATG | 8 cut(s) | 91, 189, 358, 383, 943, 1054, 1462, 1628 |
| CviQI | GTAC | 1 cut(s) | 304 |
| DdeI | CTNAG | 9 cut(s) | 204, 217, 249, 387, 1039, 1251, 1281, 1412, 1623 |
| DpnI | GATC | 2 cut(s) | 607, 1140 |
| DpnII | GATC | 2 cut(s) | 605, 1138 |
| DraI | TTTAAA | 1 cut(s) | 1380 |
| DraIII | CACNNNGTG | 2 cut(s) | 1019, 1234 |
| Eam1104I | CTCTTC | 2 cut(s) | 854, 869 |
| EarI | CTCTTC | 2 cut(s) | 854, 869 |
| Ecl136II | GAGCTC | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 3 cut(s) | 357, 1191, 1347 |
| Eco147I | AGGCCT | 2 cut(s) | 175, 1388 |
| Eco24I | GRGCYC | 2 cut(s) | 218, 315 |
| Eco31I | GGTCTC | 2 cut(s) | 28, 405 |
| Eco47I | GGWCC | 3 cut(s) | 334, 468, 1402 |
| Eco53kI | GAGCTC | 1 cut(s) | 216 |
| Eco57I | CTGAAG | 1 cut(s) | 995 |
| Eco88I | CYCGRG | 1 cut(s) | 112 |
| EcoICRI | GAGCTC | 1 cut(s) | 216 |
| EcoRI | GAATTC | 2 cut(s) | 124, 340 |
| EcoRII | CCWGG | 1 cut(s) | 1272 |
| EcoT14I | CCWWGG | 3 cut(s) | 357, 1191, 1347 |
| EcoT38I | GRGCYC | 2 cut(s) | 218, 315 |
| ErhI | CCWWGG | 3 cut(s) | 357, 1191, 1347 |
| Esp3I | CGTCTC | 1 cut(s) | 11 |
| FaeI | CATG | 8 cut(s) | 94, 192, 361, 386, 946, 1057, 1465, 1631 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1434, 1466 |
| FaqI | GGGAC | 4 cut(s) | 471, 600, 1307, 1450 |
| FatI | CATG | 8 cut(s) | 90, 188, 357, 382, 942, 1053, 1461, 1627 |
| FokI | GGATG | 3 cut(s) | 362, 629, 686 |
| FriOI | GRGCYC | 2 cut(s) | 218, 315 |
| FspBI | CTAG | 2 cut(s) | 546, 1017 |
| GlaI | GCGC | 3 cut(s) | 539, 900, 902 |
| GsaI | CCCAGC | 2 cut(s) | 992, 1471 |
| GsuI | CTGGAG | 1 cut(s) | 1416 |
| HaeIII | GGCC | 3 cut(s) | 175, 431, 1388 |
| HapII | CCGG | 5 cut(s) | 307, 404, 432, 584, 729 |
| HhaI | GCGC | 3 cut(s) | 540, 901, 903 |
| Hin1I | GRCGYC | 1 cut(s) | 299 |
| Hin1II | CATG | 8 cut(s) | 94, 192, 361, 386, 946, 1057, 1465, 1631 |
| Hin6I | GCGC | 3 cut(s) | 538, 899, 901 |
| HinP1I | GCGC | 3 cut(s) | 538, 899, 901 |
| HindIII | AAGCTT | 1 cut(s) | 1115 |
| HinfI | GANTC | 7 cut(s) | 289, 365, 492, 505, 526, 1295, 1631 |
| HpaII | CCGG | 5 cut(s) | 307, 404, 432, 584, 729 |
| HphI | GGTGA | 7 cut(s) | 385, 607, 644, 800, 883, 1005, 1082 |
| Hpy166II | GTNNAC | 2 cut(s) | 86, 376 |
| Hpy188III | TCNNGA | 1 cut(s) | 219 |
| Hpy8I | GTNNAC | 2 cut(s) | 86, 376 |
| Hpy99I | CGWCG | 2 cut(s) | 304, 440 |
| HpyAV | CCTTC | 6 cut(s) | 159, 195, 553, 860, 1436, 1605 |
| HpyCH4III | ACNGT | 3 cut(s) | 476, 907, 1176 |
| HpyCH4IV | ACGT | 2 cut(s) | 299, 1147 |
| HpyCH4V | TGCA | 9 cut(s) | 1082, 1151, 1237, 1246, 1288, 1427, 1528, 1570, 1639 |
| HpyF3I | CTNAG | 9 cut(s) | 204, 217, 249, 387, 1039, 1251, 1281, 1412, 1623 |
| HpySE526I | ACGT | 2 cut(s) | 299, 1147 |
| Hsp92I | GRCGYC | 1 cut(s) | 299 |
| Hsp92II | CATG | 8 cut(s) | 94, 192, 361, 386, 946, 1057, 1465, 1631 |
| HspAI | GCGC | 3 cut(s) | 538, 899, 901 |
| KroI | GCCGGC | 1 cut(s) | 431 |
| KroNI | GCCGGC | 1 cut(s) | 433 |
| Kzo9I | GATC | 2 cut(s) | 605, 1138 |
| LmnI | GCTCC | 6 cut(s) | 310, 621, 776, 1195, 1351, 1500 |
| LweI | GCATC | 3 cut(s) | 1194, 1363, 1515 |
| MaeI | CTAG | 2 cut(s) | 546, 1017 |
| MaeII | ACGT | 2 cut(s) | 299, 1147 |
| MaeIII | GTNAC | 5 cut(s) | 11, 406, 938, 1276, 1575 |
| MalI | GATC | 2 cut(s) | 607, 1140 |
| MbiI | CCGCTC | 1 cut(s) | 1198 |
| MboI | GATC | 2 cut(s) | 605, 1138 |
| MboII | GAAGA | 7 cut(s) | 315, 504, 871, 886, 977, 1213, 1331 |
| MfeI | CAATTG | 2 cut(s) | 179, 1083 |
| MflI | RGATCY | 1 cut(s) | 1138 |
| MhlI | GDGCHC | 2 cut(s) | 218, 315 |
| MlyI | GAGTC | 4 cut(s) | 298, 374, 1289, 1640 |
| MmeI | TCCRAC | 3 cut(s) | 495, 934, 1522 |
| MroNI | GCCGGC | 1 cut(s) | 431 |
| MseI | TTAA | 3 cut(s) | 1368, 1379, 1482 |
| MspA1I | CMGCKG | 3 cut(s) | 592, 988, 1181 |
| MspI | CCGG | 5 cut(s) | 307, 404, 432, 584, 729 |
| MspR9I | CCNGG | 4 cut(s) | 308, 585, 729, 1274 |
| MunI | CAATTG | 2 cut(s) | 179, 1083 |
| MvaI | CCWGG | 1 cut(s) | 1274 |
| MvnI | CGCG | 1 cut(s) | 901 |
| NaeI | GCCGGC | 1 cut(s) | 433 |
| NciI | CCSGG | 3 cut(s) | 308, 585, 729 |
| NcoI | CCATGG | 1 cut(s) | 357 |
| NdeII | GATC | 2 cut(s) | 605, 1138 |
| NgoMIV | GCCGGC | 1 cut(s) | 431 |
| NheI | GCTAGC | 1 cut(s) | 545 |
| NlaIII | CATG | 8 cut(s) | 94, 192, 361, 386, 946, 1057, 1465, 1631 |
| NlaIV | GGNNCC | 4 cut(s) | 312, 336, 736, 772 |
| NmeAIII | GCCGAG | 3 cut(s) | 296, 476, 763 |
| NmuCI | GTSAC | 2 cut(s) | 11, 1575 |
| NspI | RCATGY | 1 cut(s) | 1465 |
| PauI | GCGCGC | 1 cut(s) | 899 |
| PceI | AGGCCT | 2 cut(s) | 175, 1388 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 110 |
| PdiI | GCCGGC | 1 cut(s) | 433 |
| PfeI | GAWTC | 3 cut(s) | 492, 505, 526 |
| PleI | GAGTC | 4 cut(s) | 297, 373, 1289, 1639 |
| PpsI | GAGTC | 4 cut(s) | 297, 373, 1289, 1639 |
| PshBI | ATTAAT | 1 cut(s) | 1482 |
| Psp124BI | GAGCTC | 1 cut(s) | 218 |
| Psp6I | CCWGG | 1 cut(s) | 1272 |
| PspFI | CCCAGC | 2 cut(s) | 988, 1467 |
| PspGI | CCWGG | 1 cut(s) | 1272 |
| PspN4I | GGNNCC | 4 cut(s) | 312, 336, 736, 772 |
| PspPI | GGNCC | 4 cut(s) | 334, 429, 468, 1402 |
| PstI | CTGCAG | 2 cut(s) | 1248, 1429 |
| PsuI | RGATCY | 1 cut(s) | 1138 |
| PteI | GCGCGC | 1 cut(s) | 899 |
| PvuII | CAGCTG | 2 cut(s) | 592, 1181 |
| RsaI | GTAC | 1 cut(s) | 305 |
| RsaNI | GTAC | 1 cut(s) | 304 |
| SacI | GAGCTC | 1 cut(s) | 218 |
| SaqAI | TTAA | 3 cut(s) | 1368, 1379, 1482 |
| Sau3AI | GATC | 2 cut(s) | 605, 1138 |
| Sau96I | GGNCC | 4 cut(s) | 334, 429, 468, 1402 |
| SchI | GAGTC | 4 cut(s) | 298, 374, 1289, 1640 |
| ScrFI | CCNGG | 4 cut(s) | 308, 585, 729, 1274 |
| SduI | GDGCHC | 2 cut(s) | 218, 315 |
| SfaNI | GCATC | 3 cut(s) | 1194, 1363, 1515 |
| SfcI | CTRYAG | 3 cut(s) | 1244, 1425, 1502 |
| SinI | GGWCC | 3 cut(s) | 334, 468, 1402 |
| SseBI | AGGCCT | 2 cut(s) | 175, 1388 |
| SsiI | CCGC | 5 cut(s) | 518, 986, 1198, 1459, 1538 |
| SspMI | CTAG | 2 cut(s) | 546, 1017 |
| SstI | GAGCTC | 1 cut(s) | 218 |
| StuI | AGGCCT | 2 cut(s) | 175, 1388 |
| StyD4I | CCNGG | 4 cut(s) | 306, 583, 727, 1272 |
| StyI | CCWWGG | 3 cut(s) | 357, 1191, 1347 |
| TaaI | ACNGT | 3 cut(s) | 476, 907, 1176 |
| TaiI | ACGT | 2 cut(s) | 302, 1150 |
| TaqI | TCGA | 1 cut(s) | 929 |
| TaqII | GACCGA | 1 cut(s) | 387 |
| TauI | GCSGC | 2 cut(s) | 520, 1540 |
| TfiI | GAWTC | 3 cut(s) | 492, 505, 526 |
| Tru1I | TTAA | 3 cut(s) | 1368, 1379, 1482 |
| Tru9I | TTAA | 3 cut(s) | 1368, 1379, 1482 |
| TscAI | CASTG | 3 cut(s) | 16, 481, 910 |
| TseFI | GTSAC | 2 cut(s) | 11, 1575 |
| Tsp45I | GTSAC | 2 cut(s) | 11, 1575 |
| TspDTI | ATGAA | 4 cut(s) | 177, 710, 734, 978 |
| TspGWI | ACGGA | 1 cut(s) | 358 |
| TspRI | CASTG | 3 cut(s) | 16, 481, 910 |
| VpaK11BI | GGWCC | 3 cut(s) | 334, 468, 1402 |
| VspI | ATTAAT | 1 cut(s) | 1482 |
| XapI | RAATTY | 7 cut(s) | 124, 208, 340, 697, 955, 1331, 1416 |
| XceI | RCATGY | 1 cut(s) | 1465 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1607 |
| XspI | CTAG | 2 cut(s) | 546, 1017 |
| ZraI | GACGTC | 1 cut(s) | 300 |