Rw6G036950
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001797
Physical Location & Seq
Forward (+)
61410232 .. 61413298
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036950.1

Sequence Viewer

Length: 1581 bp
ATGGAGGGCAGTGACGAGACGGGCAGGGTTGCGAGACCACATCATCATTTAGACATTCCCAATTTCAGTTCAGGTCAGATAGGTTTACCCATGAGGCAGTTATCGCCGAGCCCGAGTTCGGAGAATTCCAAAAGACTTGGTATCCCTCCTTCCCACCCTAACAACCCCATGAGGCCTCAATTGCCTTCATGGCAAATGGGTTCTCAGAATTTGAGCTCAGGAGGTTCGGCTCATTCAAGGTCTTTGTCTCAGCCATCTTTTTTCTCACTTGATAGTCTGCCTCCTTTGAGTCCTTTGACCTCGTACCGGGAGCCCTCGGCTTCTTCGCTTTCGGACCCGAATTCGGTGGATGTTTCCATGGAGGAGTCTGTGGTGAACTCTCATGCTCAGTCGCTTCGGTCGCCGGTGACTGACAGCAATCCTTTTTGGGCCGGCGACGGGCTTCCTCCGAGGAGGGGACACAGGAGGTCCAACAGTGATGTGCCGTTGGGATTCTCGGCTGTGATTCAGTCGTCGCCGCAGTTGATTCCGATTGGGCGCAGGGCTAGCTTTGATGGGAAGGAGAAGGAGAGTTTGGGGATTGCGAAGCCGGGCCAGCTGGTCAGGCAAGGATCAAATGGGGATGGGAGCAACAATGGTGAAGTTATGGGGGATAGAAAATCGGGCGCGGAGGTTGTGGATGATTTGTTTAGTGCTTATATGAATTTAGAGAACATTGATAAAATGAACGAGGATAAGGATTTGGATAGTAGGGCAAGTGGCTCCAAGACAAATGGGGGTGAGAGTAGTGATAATGAGGTGGAGAGTGGGCTAAATGGGAAGTGGTCGGGTTCTGGTTTTTCGAATGAGAAGAGGGAAGGGGTGAAGAGGACTGCTGGTGGTGATGTTGCGCGCACCGTCCGACACTGTAGGAGTGTTTCAATGGATAGTTACATGGACAATTTGAATTTCGATGAAGAACTGCTGAAGCCTCTACCGCTGGGAAGTCAAGTGGGTCAGCAGTCACCTAGTGCTTCGGTAGATGGGAACTCAGCAAAGTTCAGCATGGAGTTTGGAAGTGGTGAGTTCAATGCAATTGAGCTGAAAAAGATTATGGAAAGTGAAACCAACCGTCAGTCAGCTGCTCGTTCCAAGGAGCGGAAGATGCGTTACATTGTAGAATTGGAACACAAAGTGCAAACTCTGCAGACTGAGGCAACCAATTTATCTGCCCAGGTTACTAAGTTGCAGAGGGACTCTATGGGTCTTACAAGTGAGAACAATGAGTTGAAATTTCGTCTTCAAGCCTTGGAGCAACAGGCGCAACTTAAAGATGCTTTAAACGAGGCCTTGACTGGAGAGGTCCAGCGACTTAGAATTTCTGCTGCAGAACTCGGAGGAGAAGGCAACCTTTCAAACCGCATGTCCCAGCAGCTTTCAATTAATCAACAAATGCTCCAACTACAGCAACTCAACCTCTACCAGATGCAGCAGCAACCGCAGCAGCAAACTCAACAACAGATAATGCAGCAGCCACAGCAAAATCAACTACCTTCCCATCAGCAGAATGGCAATGCTGCTAAGCATGAGTCAATGCAATAG

Protein Analysis

526

Amino Acids

57.56

Weight (kDa)

5.85

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 360 - 420 3e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1138
AccII CGCG 2 cut(s) 668, 892
AciI CCGC 6 cut(s) 518, 668, 977, 1138, 1399, 1478
AclWI GGATC 1 cut(s) 619
AcsI RAATTY 7 cut(s) 124, 208, 340, 703, 946, 1271, 1356
AcuI CTGAAG 1 cut(s) 986
AdeI CACNNNGTG 2 cut(s) 1010, 1174
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 6 cut(s) 118, 306, 343, 438, 455, 1137
AgsI TTSAA 8 cut(s) 237, 921, 946, 1069, 1270, 1283, 1395, 1419
AjnI CCWGG 1 cut(s) 1212
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 6 cut(s) 216, 549, 598, 1081, 1121, 1414
AluI AGCT 6 cut(s) 216, 549, 598, 1081, 1121, 1414
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 3 cut(s) 11, 28, 252
AlwI GGATC 1 cut(s) 619
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 4 cut(s) 173, 429, 592, 1326
ApoI RAATTY 7 cut(s) 124, 208, 340, 703, 946, 1271, 1356
ArsI GACNNNNNNTTYG 2 cut(s) 1388, 1420
AseI ATTAAT 1 cut(s) 1422
AspLEI GCGC 5 cut(s) 540, 668, 892, 894, 1303
AspS9I GGNCC 5 cut(s) 334, 429, 468, 592, 1342
AsuC2I CCSGG 2 cut(s) 308, 591
AsuHPI GGTGA 8 cut(s) 385, 418, 650, 791, 874, 893, 996, 1073
AsuII TTCGAA 1 cut(s) 842
AsuNHI GCTAGC 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 3 cut(s) 334, 468, 1342
BanII GRGCYC 3 cut(s) 113, 218, 315
BarI GAAGNNNNNNTAC 4 cut(s) 133, 165, 1133, 1165
BbsI GAAGAC 1 cut(s) 1271
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 5 cut(s) 262, 548, 617, 1016, 1545
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 1 cut(s) 1214
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 2 cut(s) 308, 591
BcoDI GTCTC 3 cut(s) 11, 28, 252
BfaI CTAG 2 cut(s) 546, 1008
BfmI CTRYAG 4 cut(s) 907, 1184, 1365, 1442
BfuI GTATCC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 190
BlpI GCTNAGC 1 cut(s) 1560
Bme1390I CCNGG 3 cut(s) 308, 591, 1214
Bme18I GGWCC 3 cut(s) 334, 468, 1342
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 5 cut(s) 334, 429, 468, 592, 1342
BmiI GGNNCC 3 cut(s) 312, 336, 763
BmrFI CCNGG 3 cut(s) 308, 591, 1214
BmsI GCATC 3 cut(s) 1134, 1303, 1455
BmtI GCTAGC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 1271
BpmI CTGGAG 1 cut(s) 1356
Bpu10I CCTNAGC 1 cut(s) 217
Bpu1102I GCTNAGC 1 cut(s) 1560
Bpu14I TTCGAA 1 cut(s) 842
BpuMI CCSGG 2 cut(s) 308, 591
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 6 cut(s) 315, 357, 449, 1131, 1212, 1287
BsaXI ACNNNNNCTCC 2 cut(s) 1419, 1449
Bsc4I CCNNNNNNNGG 6 cut(s) 118, 306, 343, 438, 455, 1137
Bse118I RCCGGY 2 cut(s) 403, 431
Bse1I ACTGG 1 cut(s) 1339
Bse3DI GCAATG 1 cut(s) 1558
BseBI CCWGG 1 cut(s) 1214
BseDI CCNNGG 6 cut(s) 315, 357, 449, 1131, 1212, 1287
BseGI GGATG 3 cut(s) 355, 628, 685
BseLI CCNNNNNNNGG 6 cut(s) 118, 306, 343, 438, 455, 1137
BseMI GCAATG 1 cut(s) 1558
BseMII CTCAG 6 cut(s) 218, 231, 263, 401, 1044, 1182
BseNI ACTGG 1 cut(s) 1339
BsePI GCGCGC 1 cut(s) 890
BseRI GAGGAG 3 cut(s) 377, 466, 1392
BseYI CCCAGC 2 cut(s) 979, 1407
Bsh1236I CGCG 2 cut(s) 668, 892
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 4 cut(s) 175, 431, 594, 1328
BsiEI CGRYCG 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 4 cut(s) 307, 404, 432, 590
BslFI GGGAC 3 cut(s) 471, 1247, 1390
BslI CCNNNNNNNGG 6 cut(s) 118, 306, 343, 438, 455, 1137
BsmAI GTCTC 3 cut(s) 11, 28, 252
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 3 cut(s) 471, 1247, 1390
BsnI GGCC 4 cut(s) 175, 431, 594, 1328
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 842
Bsp1286I GDGCHC 3 cut(s) 113, 218, 315
Bsp143I GATC 1 cut(s) 611
Bsp1720I GCTNAGC 1 cut(s) 1560
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 6 cut(s) 518, 668, 977, 1138, 1399, 1478
BspANI GGCC 4 cut(s) 175, 431, 594, 1328
BspCNI CTCAG 6 cut(s) 217, 230, 262, 400, 1043, 1183
BspFNI CGCG 2 cut(s) 668, 892
BspLI GGNNCC 3 cut(s) 312, 336, 763
BspMAI CTGCAG 2 cut(s) 1188, 1369
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 1 cut(s) 619
BspT104I TTCGAA 1 cut(s) 842
BspTNI GGTCTC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 1138
BsrDI GCAATG 1 cut(s) 1558
BsrFI RCCGGY 2 cut(s) 403, 431
BsrI ACTGG 1 cut(s) 1339
BssAI RCCGGY 2 cut(s) 403, 431
BssECI CCNNGG 6 cut(s) 315, 357, 449, 1131, 1212, 1287
BssHII GCGCGC 1 cut(s) 890
BssMI GATC 1 cut(s) 611
BssT1I CCWWGG 3 cut(s) 357, 1131, 1287
Bst2UI CCWGG 1 cut(s) 1214
Bst4CI ACNGT 4 cut(s) 476, 898, 908, 1112
Bst6I CTCTTC 2 cut(s) 845, 860
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstBI TTCGAA 1 cut(s) 842
BstC8I GCNNGC 4 cut(s) 433, 547, 596, 892
BstDEI CTNAG 9 cut(s) 204, 217, 249, 387, 1030, 1191, 1221, 1352, 1560
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 355, 628, 685
BstFNI CGCG 2 cut(s) 668, 892
BstHHI GCGC 5 cut(s) 540, 668, 892, 894, 1303
BstKTI GATC 1 cut(s) 614
BstMAI GTCTC 3 cut(s) 11, 28, 252
BstMBI GATC 1 cut(s) 611
BstMCI CGRYCG 1 cut(s) 401
BstNI CCWGG 1 cut(s) 1214
BstNSI RCATGY 1 cut(s) 1405
BstSCI CCNGG 3 cut(s) 306, 589, 1212
BstSFI CTRYAG 4 cut(s) 907, 1184, 1365, 1442
BstUI CGCG 2 cut(s) 668, 892
BstV2I GAAGAC 1 cut(s) 1271
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 4 cut(s) 175, 431, 594, 1328
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 355, 628, 685
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 481, 904
Cac8I GCNNGC 4 cut(s) 433, 547, 596, 892
CfoI GCGC 5 cut(s) 540, 668, 892, 894, 1303
Cfr10I RCCGGY 2 cut(s) 403, 431
Cfr13I GGNCC 5 cut(s) 334, 429, 468, 592, 1342
Csp6I GTAC 1 cut(s) 304
CviAII CATG 9 cut(s) 91, 169, 189, 358, 383, 934, 1045, 1402, 1565
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 9 cut(s) 204, 217, 249, 387, 1030, 1191, 1221, 1352, 1560
DpnI GATC 1 cut(s) 613
DpnII GATC 1 cut(s) 611
DraI TTTAAA 1 cut(s) 1320
DraIII CACNNNGTG 2 cut(s) 1010, 1174
Eam1104I CTCTTC 2 cut(s) 845, 860
EarI CTCTTC 2 cut(s) 845, 860
Ecl136II GAGCTC 1 cut(s) 216
Eco130I CCWWGG 3 cut(s) 357, 1131, 1287
Eco147I AGGCCT 2 cut(s) 175, 1328
Eco24I GRGCYC 3 cut(s) 113, 218, 315
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 3 cut(s) 334, 468, 1342
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 986
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 216
EcoRI GAATTC 2 cut(s) 124, 340
EcoRII CCWGG 1 cut(s) 1212
EcoT14I CCWWGG 3 cut(s) 357, 1131, 1287
EcoT38I GRGCYC 3 cut(s) 113, 218, 315
ErhI CCWWGG 3 cut(s) 357, 1131, 1287
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 9 cut(s) 94, 172, 192, 361, 386, 937, 1048, 1405, 1568
FalI AAGNNNNNCTT 2 cut(s) 1374, 1406
FaqI GGGAC 3 cut(s) 471, 1247, 1390
FatI CATG 9 cut(s) 90, 168, 188, 357, 382, 933, 1044, 1401, 1564
FokI GGATG 3 cut(s) 362, 635, 692
FriOI GRGCYC 3 cut(s) 113, 218, 315
FspBI CTAG 2 cut(s) 546, 1008
GlaI GCGC 5 cut(s) 539, 667, 891, 893, 1302
GsaI CCCAGC 2 cut(s) 983, 1411
GsuI CTGGAG 1 cut(s) 1356
HaeIII GGCC 4 cut(s) 175, 431, 594, 1328
HapII CCGG 4 cut(s) 307, 404, 432, 590
HhaI GCGC 5 cut(s) 540, 668, 892, 894, 1303
Hin1II CATG 9 cut(s) 94, 172, 192, 361, 386, 937, 1048, 1405, 1568
Hin6I GCGC 5 cut(s) 538, 666, 890, 892, 1301
HinP1I GCGC 5 cut(s) 538, 666, 890, 892, 1301
HinfI GANTC 7 cut(s) 289, 365, 492, 505, 526, 1235, 1568
HpaII CCGG 4 cut(s) 307, 404, 432, 590
HphI GGTGA 8 cut(s) 385, 418, 650, 791, 874, 893, 996, 1073
Hpy166II GTNNAC 2 cut(s) 86, 376
Hpy188I TCNGA 8 cut(s) 78, 121, 207, 334, 450, 531, 902, 1376
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 2 cut(s) 86, 376
Hpy99I CGWCG 2 cut(s) 440, 517
HpyAV CCTTC 7 cut(s) 159, 195, 553, 559, 851, 1376, 1542
HpyCH4III ACNGT 4 cut(s) 476, 898, 908, 1112
HpyCH4V TGCA 8 cut(s) 1073, 1177, 1186, 1228, 1367, 1468, 1507, 1576
HpyF3I CTNAG 9 cut(s) 204, 217, 249, 387, 1030, 1191, 1221, 1352, 1560
Hsp92II CATG 9 cut(s) 94, 172, 192, 361, 386, 937, 1048, 1405, 1568
HspAI GCGC 5 cut(s) 538, 666, 890, 892, 1301
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Kzo9I GATC 1 cut(s) 611
LmnI GCTCC 6 cut(s) 310, 627, 767, 1135, 1291, 1440
LweI GCATC 3 cut(s) 1134, 1303, 1455
MaeI CTAG 2 cut(s) 546, 1008
MaeIII GTNAC 6 cut(s) 11, 406, 929, 1002, 1148, 1216
MalI GATC 1 cut(s) 613
MbiI CCGCTC 1 cut(s) 1138
MboI GATC 1 cut(s) 611
MboII GAAGA 6 cut(s) 315, 862, 877, 968, 1153, 1271
MfeI CAATTG 2 cut(s) 179, 1074
MhlI GDGCHC 3 cut(s) 113, 218, 315
MlyI GAGTC 4 cut(s) 298, 374, 1229, 1577
MmeI TCCRAC 3 cut(s) 495, 925, 1462
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 3 cut(s) 1308, 1319, 1422
MspA1I CMGCKG 3 cut(s) 598, 979, 1121
MspI CCGG 4 cut(s) 307, 404, 432, 590
MspR9I CCNGG 3 cut(s) 308, 591, 1214
MunI CAATTG 2 cut(s) 179, 1074
MvaI CCWGG 1 cut(s) 1214
MvnI CGCG 2 cut(s) 668, 892
NaeI GCCGGC 1 cut(s) 433
NciI CCSGG 2 cut(s) 308, 591
NcoI CCATGG 1 cut(s) 357
NdeII GATC 1 cut(s) 611
NgoMIV GCCGGC 1 cut(s) 431
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 9 cut(s) 94, 172, 192, 361, 386, 937, 1048, 1405, 1568
NlaIV GGNNCC 3 cut(s) 312, 336, 763
NmeAIII GCCGAG 3 cut(s) 132, 296, 476
NmuCI GTSAC 3 cut(s) 11, 406, 1002
NspI RCATGY 1 cut(s) 1405
NspV TTCGAA 1 cut(s) 842
PauI GCGCGC 1 cut(s) 890
PceI AGGCCT 2 cut(s) 175, 1328
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PdiI GCCGGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 492, 505, 526
PleI GAGTC 4 cut(s) 297, 373, 1229, 1576
PpsI GAGTC 4 cut(s) 297, 373, 1229, 1576
PshBI ATTAAT 1 cut(s) 1422
Psp124BI GAGCTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 1212
PspFI CCCAGC 2 cut(s) 979, 1407
PspGI CCWGG 1 cut(s) 1212
PspN4I GGNNCC 3 cut(s) 312, 336, 763
PspPI GGNCC 5 cut(s) 334, 429, 468, 592, 1342
PstI CTGCAG 2 cut(s) 1188, 1369
PteI GCGCGC 1 cut(s) 890
PvuII CAGCTG 2 cut(s) 598, 1121
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SacI GAGCTC 1 cut(s) 218
SaqAI TTAA 3 cut(s) 1308, 1319, 1422
Sau3AI GATC 1 cut(s) 611
Sau96I GGNCC 5 cut(s) 334, 429, 468, 592, 1342
SchI GAGTC 4 cut(s) 298, 374, 1229, 1577
ScrFI CCNGG 3 cut(s) 308, 591, 1214
SduI GDGCHC 3 cut(s) 113, 218, 315
SfaNI GCATC 3 cut(s) 1134, 1303, 1455
SfcI CTRYAG 4 cut(s) 907, 1184, 1365, 1442
SfuI TTCGAA 1 cut(s) 842
SgrAI CRCCGGYG 1 cut(s) 403
SinI GGWCC 3 cut(s) 334, 468, 1342
SseBI AGGCCT 2 cut(s) 175, 1328
SsiI CCGC 6 cut(s) 518, 668, 977, 1138, 1399, 1478
SspMI CTAG 2 cut(s) 546, 1008
SstI GAGCTC 1 cut(s) 218
StuI AGGCCT 2 cut(s) 175, 1328
StyD4I CCNGG 3 cut(s) 306, 589, 1212
StyI CCWWGG 3 cut(s) 357, 1131, 1287
TaaI ACNGT 4 cut(s) 476, 898, 908, 1112
TaqI TCGA 2 cut(s) 842, 951
TaqII GACCGA 1 cut(s) 387
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 3 cut(s) 492, 505, 526
Tru1I TTAA 3 cut(s) 1308, 1319, 1422
Tru9I TTAA 3 cut(s) 1308, 1319, 1422
TscAI CASTG 3 cut(s) 16, 481, 911
TseFI GTSAC 3 cut(s) 11, 406, 1002
Tsp45I GTSAC 3 cut(s) 11, 406, 1002
TspDTI ATGAA 4 cut(s) 177, 716, 740, 969
TspRI CASTG 3 cut(s) 16, 481, 911
VpaK11BI GGWCC 3 cut(s) 334, 468, 1342
VspI ATTAAT 1 cut(s) 1422
XapI RAATTY 7 cut(s) 124, 208, 340, 703, 946, 1271, 1356
XceI RCATGY 1 cut(s) 1405
XcmI CCANNNNNNNNNTGG 1 cut(s) 1544
XspI CTAG 2 cut(s) 546, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.