Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011714.1

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2701

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 865 bp

atgtctggtgcagaaaattcagggatggttaagccagctcagttggttaaaaaggaatcttgttgggaaagagctggcgataacaatgcggaagggacgggtgagaggaagtctgaaggggaagtagtggatgatttgttttctgcatatatgaatttggatagcattgatgctttgaactcttcggggactgatgacaagaatggtaatgagaatcgtgaggatatggacagtagtagagcaagtgggactaagacaaattgtgacagcagtgataatgaagtggaaagcagtgttaatgaaagtggaggcatgcatagaccgggactgaatattatgactgatatgagggaagggattaaaaggagtgcggggggagatattgcgccgaccactcgacacttcagaagtgtctccatggacagttttatgggtaagctgcaatttggtgatgagtcacctaaactaccgccttcaccaggaactcggccaggacaactttcccccagcaattcaattgatacgaattcaaatgcctttagcttggaatttggaaacggtgagttcagtggggctgaaatgaagaaaattatggctaatgaaaagcttgccgagattgcaatgaccgatccaaagcgtgcaaaaaggatattggcaaatcgtcaatcagctgcccgttccaaagaacggaagatgcgctacatttcagagttggaacacaaggttcagactctacagacagaagcaacaacactgtctgcacagcttacactattacagagagattctgttggtctcagtaaccagaataatgagttgaagtttcgccttcaagctatggaacaacaggctcaactcagagatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

288

Amino Acids

31.52

Weight (kDa)

5.27

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	89, 371, 470
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	1 cut(s)	488
AcsI	RAATTY	4 cut(s)	16, 154, 526, 548
AcuI	CTGAAG	2 cut(s)	135, 388
AfiI	CCNNNNNNNGG	2 cut(s)	479, 687
AgsI	TTSAA	5 cut(s)	178, 516, 531, 820, 833
AjnI	CCWGG	2 cut(s)	478, 490
AluBI	AGCT	8 cut(s)	38, 74, 439, 543, 607, 671, 766, 836
AluI	AGCT	8 cut(s)	38, 74, 439, 543, 607, 671, 766, 836
Alw26I	GTCTC	2 cut(s)	418, 800
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	439, 671
ApoI	RAATTY	4 cut(s)	16, 154, 526, 548
AspLEI	GCGC	2 cut(s)	388, 699
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	5 cut(s)	113, 450, 461, 468, 572
BarI	GAAGNNNNNNTAC	2 cut(s)	683, 715
BbvI	GCAGC	2 cut(s)	426, 658
BccI	CCATC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	480, 492
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	418, 800
BfmI	CTRYAG	1 cut(s)	734
BisI	GCNGC	2 cut(s)	440, 672
BlsI	GCNGC	2 cut(s)	441, 673
Bme1390I	CCNGG	3 cut(s)	324, 480, 492
BmrFI	CCNGG	3 cut(s)	324, 480, 492
BmsI	GCATC	2 cut(s)	160, 684
BpuMI	CCSGG	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 687
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	480, 492
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	30, 136
BseLI	CCNNNNNNNGG	2 cut(s)	479, 687
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	53, 811
BseXI	GCAGC	2 cut(s)	426, 658
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	2 cut(s)	30, 744
BshFI	GGCC	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	4 cut(s)	109, 202, 262, 339
BslI	CCNNNNNNNGG	2 cut(s)	479, 687
BsmAI	GTCTC	2 cut(s)	418, 800
BsmFI	GGGAC	4 cut(s)	109, 202, 262, 339
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	1 cut(s)	800
Bsp143I	GATC	1 cut(s)	628
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	3 cut(s)	89, 371, 470
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	2 cut(s)	52, 810
BspPI	GGATC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	627
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	1 cut(s)	628
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	480, 492
Bst4CI	ACNGT	4 cut(s)	233, 425, 560, 756
Bst6I	CTCTTC	1 cut(s)	187
BstC8I	GCNNGC	5 cut(s)	36, 76, 314, 609, 639
BstDEI	CTNAG	4 cut(s)	39, 252, 797, 857
BstDSI	CCRYGG	1 cut(s)	417
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	30, 136
BstHHI	GCGC	2 cut(s)	388, 699
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	2 cut(s)	418, 800
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	2 cut(s)	480, 492
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	322, 478, 490
BstSFI	CTRYAG	1 cut(s)	734
BstV1I	GCAGC	2 cut(s)	426, 658
BsuRI	GGCC	1 cut(s)	490
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	30, 136
BtsI	GCAGTG	2 cut(s)	277, 298
BtsIMutI	CAGTG	4 cut(s)	277, 298, 574, 752
Cac8I	GCNNGC	5 cut(s)	36, 76, 314, 609, 639
CfoI	GCGC	2 cut(s)	388, 699
CviAII	CATG	2 cut(s)	313, 418
DdeI	CTNAG	4 cut(s)	39, 252, 797, 857
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	800
Eco57I	CTGAAG	2 cut(s)	135, 388
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	2 cut(s)	478, 490
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	2 cut(s)	316, 421
FaqI	GGGAC	4 cut(s)	109, 202, 262, 339
FatI	CATG	2 cut(s)	312, 417
FauI	CCCGC	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	440, 672
FokI	GGATG	2 cut(s)	37, 143
Fsp4HI	GCNGC	2 cut(s)	440, 672
GlaI	GCGC	2 cut(s)	387, 698
GluI	GCNGC	2 cut(s)	440, 672
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	323
HhaI	GCGC	2 cut(s)	388, 699
Hin1II	CATG	2 cut(s)	316, 421
Hin6I	GCGC	2 cut(s)	386, 697
HinP1I	GCGC	2 cut(s)	386, 697
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	5 cut(s)	56, 214, 455, 730, 785
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	5 cut(s)	113, 450, 461, 468, 572
Hpy188I	TCNGA	5 cut(s)	115, 407, 709, 729, 860
Hpy188III	TCNNGA	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	86, 110, 347, 483, 839
HpyCH4III	ACNGT	4 cut(s)	233, 425, 560, 756
HpyCH4V	TGCA	7 cut(s)	11, 146, 316, 442, 620, 641, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	4 cut(s)	39, 252, 797, 857
Hsp92II	CATG	2 cut(s)	316, 421
HspAI	GCGC	2 cut(s)	386, 697
Kzo9I	GATC	1 cut(s)	628
Lsp1109I	GCAGC	2 cut(s)	426, 658
LweI	GCATC	2 cut(s)	160, 684
MaeIII	GTNAC	3 cut(s)	263, 456, 800
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	3 cut(s)	174, 595, 703
MfeI	CAATTG	1 cut(s)	516
MluCI	AATT	9 cut(s)	16, 154, 259, 443, 511, 516, 526, 548, 588
MlyI	GAGTC	2 cut(s)	464, 724
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	4 cut(s)	99, 214, 302, 342
Mph1103I	ATGCAT	1 cut(s)	318
MseI	TTAA	4 cut(s)	30, 48, 297, 360
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	3 cut(s)	324, 480, 492
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	2 cut(s)	480, 492
MwoI	GCNNNNNNNGC	1 cut(s)	617
NciI	CCSGG	1 cut(s)	324
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	2 cut(s)	316, 421
NmeAIII	GCCGAG	2 cut(s)	466, 637
NmuCI	GTSAC	2 cut(s)	263, 456
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	1 cut(s)	316
PaeI	GCATGC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	56, 214, 785
PkrI	GCNGC	2 cut(s)	441, 673
PleI	GAGTC	2 cut(s)	463, 724
PpsI	GAGTC	2 cut(s)	463, 724
Psp6I	CCWGG	2 cut(s)	478, 490
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	478, 490
PvuII	CAGCTG	1 cut(s)	671
SaqAI	TTAA	4 cut(s)	30, 48, 297, 360
SatI	GCNGC	2 cut(s)	440, 672
Sau3AI	GATC	1 cut(s)	628
SchI	GAGTC	2 cut(s)	464, 724
ScrFI	CCNGG	3 cut(s)	324, 480, 492
SfaNI	GCATC	2 cut(s)	160, 684
SfcI	CTRYAG	1 cut(s)	734
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	9 cut(s)	16, 154, 259, 443, 511, 516, 526, 548, 588
SsiI	CCGC	3 cut(s)	89, 371, 470
SspI	AATATT	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	322, 478, 490
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	4 cut(s)	233, 425, 560, 756
TaqI	TCGA	1 cut(s)	397
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	9 cut(s)	16, 154, 259, 443, 511, 516, 526, 548, 588
TfiI	GAWTC	3 cut(s)	56, 214, 785
Tru1I	TTAA	4 cut(s)	30, 48, 297, 360
Tru9I	TTAA	4 cut(s)	30, 48, 297, 360
TscAI	CASTG	4 cut(s)	277, 298, 574, 759
TseFI	GTSAC	2 cut(s)	263, 456
TseI	GCWGC	2 cut(s)	439, 671
Tsp45I	GTSAC	2 cut(s)	263, 456
TspDTI	ATGAA	5 cut(s)	167, 294, 315, 596, 615
TspGWI	ACGGA	1 cut(s)	703
TspRI	CASTG	4 cut(s)	277, 298, 574, 759
XagI	CCTNNNNNAGG	1 cut(s)	477
XapI	RAATTY	4 cut(s)	16, 154, 526, 548
XceI	RCATGY	1 cut(s)	316
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.