transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900 |
| fragaria_vesca | FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831 |
| malus_domestica | MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1 |
| prunus_persica | Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1 |
| pyrus_communis | pycom08g01400 pycom08g01410 pycom15g01300 |
| rosa_chinensis | RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431 |
| rosa_laevigata | RLG00000011172 RLG00000013914 |
| rosa_multiflora | Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165790 Rroxscaffold_7G00199840 |
| rosa_rugosa | Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200 |
| rosa_samantha | Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300 |
| rosa_wichuraiana | Rw6G013910 Rw6G036950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 483, 561 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 56 |
| AccII | CGCG | 2 cut(s) | 333, 1478 |
| AciI | CCGC | 7 cut(s) | 40, 331, 542, 897, 903, 1425, 1484 |
| AclWI | GGATC | 2 cut(s) | 544, 628 |
| AcoI | YGGCCR | 1 cut(s) | 463 |
| AcsI | RAATTY | 3 cut(s) | 700, 970, 1334 |
| AcuI | CTGAAG | 3 cut(s) | 840, 866, 1010 |
| AcyI | GRCGYC | 1 cut(s) | 562 |
| AdeI | CACNNNGTG | 1 cut(s) | 1237 |
| AfaI | GTAC | 2 cut(s) | 329, 915 |
| AfeI | AGCGCT | 1 cut(s) | 1134 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 56, 224, 264, 479, 857, 1003, 1195, 1200 |
| AgsI | TTSAA | 5 cut(s) | 115, 945, 1081, 1333, 1346 |
| AjnI | CCWGG | 2 cut(s) | 163, 615 |
| AluBI | AGCT | 8 cut(s) | 246, 854, 1041, 1093, 1169, 1184, 1420, 1435 |
| AluI | AGCT | 8 cut(s) | 246, 854, 1041, 1093, 1169, 1184, 1420, 1435 |
| Alw21I | GWGCWC | 3 cut(s) | 248, 1043, 1437 |
| Alw26I | GTCTC | 2 cut(s) | 279, 1290 |
| AlwI | GGATC | 2 cut(s) | 544, 628 |
| Aor51HI | AGCGCT | 1 cut(s) | 1134 |
| AoxI | GGCC | 7 cut(s) | 41, 161, 215, 463, 1006, 1362, 1389 |
| ApeKI | GCWGC | 4 cut(s) | 1184, 1427, 1486, 1498 |
| ApoI | RAATTY | 3 cut(s) | 700, 970, 1334 |
| AspLEI | GCGC | 4 cut(s) | 492, 564, 1135, 1480 |
| AspS9I | GGNCC | 3 cut(s) | 894, 1006, 1363 |
| AsuC2I | CCSGG | 1 cut(s) | 428 |
| AsuHPI | GGTGA | 3 cut(s) | 800, 1008, 1085 |
| AsuNHI | GCTAGC | 1 cut(s) | 1420 |
| AvaII | GGWCC | 1 cut(s) | 894 |
| BaeGI | GKGCMC | 1 cut(s) | 486 |
| BanI | GGYRCC | 2 cut(s) | 483, 561 |
| BanII | GRGCYC | 5 cut(s) | 248, 320, 339, 1043, 1437 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1196, 1228 |
| BbsI | GAAGAC | 2 cut(s) | 782, 854 |
| Bbv12I | GWGCWC | 3 cut(s) | 248, 1043, 1437 |
| BbvCI | CCTCAGC | 1 cut(s) | 636 |
| BbvI | GCAGC | 4 cut(s) | 1171, 1414, 1498, 1510 |
| BccI | CCATC | 2 cut(s) | 455, 1028 |
| BceAI | ACGGC | 2 cut(s) | 450, 853 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 42, 76 |
| BciT130I | CCWGG | 2 cut(s) | 165, 617 |
| BcnI | CCSGG | 1 cut(s) | 428 |
| BcoDI | GTCTC | 2 cut(s) | 279, 1290 |
| BfaI | CTAG | 3 cut(s) | 264, 1031, 1421 |
| BfmI | CTRYAG | 2 cut(s) | 1247, 1428 |
| BfoI | RGCGCY | 3 cut(s) | 493, 565, 1136 |
| BisI | GCNGC | 7 cut(s) | 41, 542, 1185, 1425, 1428, 1487, 1499 |
| BlpI | GCTNAGC | 1 cut(s) | 1042 |
| BlsI | GCNGC | 7 cut(s) | 42, 543, 1186, 1426, 1429, 1488, 1500 |
| Bme1390I | CCNGG | 3 cut(s) | 165, 428, 617 |
| Bme18I | GGWCC | 1 cut(s) | 894 |
| BmgT120I | GGNCC | 3 cut(s) | 894, 1006, 1363 |
| BmiI | GGNNCC | 3 cut(s) | 78, 485, 563 |
| BmrFI | CCNGG | 3 cut(s) | 165, 428, 617 |
| BmsI | GCATC | 2 cut(s) | 1197, 1366 |
| BmtI | GCTAGC | 1 cut(s) | 1424 |
| BpiI | GAAGAC | 2 cut(s) | 782, 854 |
| BpmI | CTGGAG | 1 cut(s) | 477 |
| Bpu10I | CCTNAGC | 3 cut(s) | 81, 247, 636 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1042 |
| BpuEI | CTTGAG | 1 cut(s) | 872 |
| BpuMI | CCSGG | 1 cut(s) | 428 |
| BsaHI | GRCGYC | 1 cut(s) | 562 |
| BsaJI | CCNNGG | 5 cut(s) | 164, 426, 616, 1194, 1302 |
| BsaWI | WCCGGW | 1 cut(s) | 1397 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 657, 687, 897, 927 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 56, 224, 264, 479, 857, 1003, 1195, 1200 |
| Bse118I | RCCGGY | 2 cut(s) | 486, 1000 |
| Bse1I | ACTGG | 3 cut(s) | 25, 599, 765 |
| Bse3DI | GCAATG | 1 cut(s) | 928 |
| BseBI | CCWGG | 2 cut(s) | 165, 617 |
| BseDI | CCNNGG | 5 cut(s) | 164, 426, 616, 1194, 1302 |
| BseGI | GGATG | 3 cut(s) | 254, 583, 682 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 56, 224, 264, 479, 857, 1003, 1195, 1200 |
| BseMI | GCAATG | 1 cut(s) | 928 |
| BseMII | CTCAG | 5 cut(s) | 138, 261, 534, 627, 1056 |
| BseNI | ACTGG | 3 cut(s) | 25, 599, 765 |
| BseRI | GAGGAG | 2 cut(s) | 462, 889 |
| BseSI | GKGCMC | 1 cut(s) | 486 |
| BseXI | GCAGC | 4 cut(s) | 1171, 1414, 1498, 1510 |
| BseYI | CCCAGC | 1 cut(s) | 1019 |
| Bsh1236I | CGCG | 2 cut(s) | 333, 1478 |
| BshFI | GGCC | 7 cut(s) | 43, 163, 217, 465, 1008, 1364, 1391 |
| BshNI | GGYRCC | 2 cut(s) | 483, 561 |
| BsiHKAI | GWGCWC | 3 cut(s) | 248, 1043, 1437 |
| BsiSI | CCGG | 4 cut(s) | 428, 487, 1001, 1398 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 56, 224, 264, 479, 857, 1003, 1195, 1200 |
| BsmAI | GTCTC | 2 cut(s) | 279, 1290 |
| BsmI | GAATGC | 1 cut(s) | 637 |
| BsnI | GGCC | 7 cut(s) | 43, 163, 217, 465, 1008, 1364, 1391 |
| Bsp1286I | GDGCHC | 6 cut(s) | 248, 320, 339, 486, 1043, 1437 |
| Bsp143I | GATC | 3 cut(s) | 525, 549, 620 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1042 |
| Bsp19I | CCATGG | 1 cut(s) | 1302 |
| BspACI | CCGC | 7 cut(s) | 40, 331, 542, 897, 903, 1425, 1484 |
| BspANI | GGCC | 7 cut(s) | 43, 163, 217, 465, 1008, 1364, 1391 |
| BspCNI | CTCAG | 5 cut(s) | 139, 260, 533, 628, 1055 |
| BspFNI | CGCG | 2 cut(s) | 333, 1478 |
| BspLI | GGNNCC | 3 cut(s) | 78, 485, 563 |
| BspMAI | CTGCAG | 2 cut(s) | 1251, 1432 |
| BspOI | GCTAGC | 1 cut(s) | 1424 |
| BspPI | GGATC | 2 cut(s) | 544, 628 |
| BspT107I | GGYRCC | 2 cut(s) | 483, 561 |
| BsrDI | GCAATG | 1 cut(s) | 928 |
| BsrFI | RCCGGY | 2 cut(s) | 486, 1000 |
| BsrI | ACTGG | 3 cut(s) | 25, 599, 765 |
| BssAI | RCCGGY | 2 cut(s) | 486, 1000 |
| BssECI | CCNNGG | 5 cut(s) | 164, 426, 616, 1194, 1302 |
| BssMI | GATC | 3 cut(s) | 525, 549, 620 |
| BssNI | GRCGYC | 1 cut(s) | 562 |
| BssT1I | CCWWGG | 2 cut(s) | 1194, 1302 |
| Bst2UI | CCWGG | 2 cut(s) | 165, 617 |
| Bst4CI | ACNGT | 2 cut(s) | 500, 1175 |
| BstACI | GRCGYC | 1 cut(s) | 562 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1246, 1495 |
| BstC8I | GCNNGC | 5 cut(s) | 335, 842, 852, 901, 1422 |
| BstDEI | CTNAG | 6 cut(s) | 81, 147, 247, 520, 636, 1042 |
| BstDSI | CCRYGG | 1 cut(s) | 1302 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 477 |
| BstF5I | GGATG | 3 cut(s) | 254, 583, 682 |
| BstFNI | CGCG | 2 cut(s) | 333, 1478 |
| BstH2I | RGCGCY | 3 cut(s) | 493, 565, 1136 |
| BstHHI | GCGC | 4 cut(s) | 492, 564, 1135, 1480 |
| BstKTI | GATC | 3 cut(s) | 528, 552, 623 |
| BstMAI | GTCTC | 2 cut(s) | 279, 1290 |
| BstMBI | GATC | 3 cut(s) | 525, 549, 620 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 40, 452, 1130, 1246, 1417, 1486, 1495 |
| BstNI | CCWGG | 2 cut(s) | 165, 617 |
| BstNSI | RCATGY | 1 cut(s) | 844 |
| BstSCI | CCNGG | 3 cut(s) | 163, 426, 615 |
| BstSFI | CTRYAG | 2 cut(s) | 1247, 1428 |
| BstSLI | GKGCMC | 1 cut(s) | 486 |
| BstUI | CGCG | 2 cut(s) | 333, 1478 |
| BstV1I | GCAGC | 4 cut(s) | 1171, 1414, 1498, 1510 |
| BstV2I | GAAGAC | 2 cut(s) | 782, 854 |
| BsuRI | GGCC | 7 cut(s) | 43, 163, 217, 465, 1008, 1364, 1391 |
| BtgI | CCRYGG | 1 cut(s) | 1302 |
| BtsCI | GGATG | 3 cut(s) | 254, 583, 682 |
| BtsI | GCAGTG | 3 cut(s) | 16, 31, 441 |
| BtsIMutI | CAGTG | 6 cut(s) | 16, 31, 441, 505, 772, 986 |
| Cac8I | GCNNGC | 5 cut(s) | 335, 842, 852, 901, 1422 |
| CfoI | GCGC | 4 cut(s) | 492, 564, 1135, 1480 |
| Cfr10I | RCCGGY | 2 cut(s) | 486, 1000 |
| Cfr13I | GGNCC | 3 cut(s) | 894, 1006, 1363 |
| Csp6I | GTAC | 2 cut(s) | 328, 914 |
| CviAII | CATG | 5 cut(s) | 407, 697, 841, 1057, 1303 |
| CviQI | GTAC | 2 cut(s) | 328, 914 |
| DdeI | CTNAG | 6 cut(s) | 81, 147, 247, 520, 636, 1042 |
| DinI | GGCGCC | 1 cut(s) | 563 |
| DpnI | GATC | 3 cut(s) | 527, 551, 622 |
| DpnII | GATC | 3 cut(s) | 525, 549, 620 |
| DraI | TTTAAA | 1 cut(s) | 1383 |
| DraIII | CACNNNGTG | 1 cut(s) | 1237 |
| EaeI | YGGCCR | 1 cut(s) | 463 |
| Ecl136II | GAGCTC | 3 cut(s) | 246, 1041, 1435 |
| Eco130I | CCWWGG | 2 cut(s) | 1194, 1302 |
| Eco147I | AGGCCT | 3 cut(s) | 163, 217, 1391 |
| Eco24I | GRGCYC | 5 cut(s) | 248, 320, 339, 1043, 1437 |
| Eco47I | GGWCC | 1 cut(s) | 894 |
| Eco47III | AGCGCT | 1 cut(s) | 1134 |
| Eco53kI | GAGCTC | 3 cut(s) | 246, 1041, 1435 |
| Eco57I | CTGAAG | 3 cut(s) | 840, 866, 1010 |
| EcoICRI | GAGCTC | 3 cut(s) | 246, 1041, 1435 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 477 |
| EcoRII | CCWGG | 2 cut(s) | 163, 615 |
| EcoT14I | CCWWGG | 2 cut(s) | 1194, 1302 |
| EcoT22I | ATGCAT | 1 cut(s) | 694 |
| EcoT38I | GRGCYC | 5 cut(s) | 248, 320, 339, 1043, 1437 |
| EgeI | GGCGCC | 1 cut(s) | 563 |
| EheI | GGCGCC | 1 cut(s) | 563 |
| ErhI | CCWWGG | 2 cut(s) | 1194, 1302 |
| FaeI | CATG | 5 cut(s) | 410, 700, 844, 1060, 1306 |
| FatI | CATG | 5 cut(s) | 406, 696, 840, 1056, 1302 |
| Fnu4HI | GCNGC | 7 cut(s) | 41, 542, 1185, 1425, 1428, 1487, 1499 |
| FokI | GGATG | 3 cut(s) | 241, 590, 689 |
| FriOI | GRGCYC | 5 cut(s) | 248, 320, 339, 1043, 1437 |
| Fsp4HI | GCNGC | 7 cut(s) | 41, 542, 1185, 1425, 1428, 1487, 1499 |
| FspBI | CTAG | 3 cut(s) | 264, 1031, 1421 |
| GlaI | GCGC | 4 cut(s) | 491, 563, 1134, 1479 |
| GluI | GCNGC | 7 cut(s) | 41, 542, 1185, 1425, 1428, 1487, 1499 |
| GsaI | CCCAGC | 1 cut(s) | 1023 |
| GsuI | CTGGAG | 1 cut(s) | 477 |
| HaeII | RGCGCY | 3 cut(s) | 493, 565, 1136 |
| HaeIII | GGCC | 7 cut(s) | 43, 163, 217, 465, 1008, 1364, 1391 |
| HapII | CCGG | 4 cut(s) | 428, 487, 1001, 1398 |
| HhaI | GCGC | 4 cut(s) | 492, 564, 1135, 1480 |
| Hin1I | GRCGYC | 1 cut(s) | 562 |
| Hin1II | CATG | 5 cut(s) | 410, 700, 844, 1060, 1306 |
| Hin6I | GCGC | 4 cut(s) | 490, 562, 1133, 1478 |
| HinP1I | GCGC | 4 cut(s) | 490, 562, 1133, 1478 |
| HincII | GTYRAC | 2 cut(s) | 400, 533 |
| HindII | GTYRAC | 2 cut(s) | 400, 533 |
| HinfI | GANTC | 8 cut(s) | 142, 169, 299, 516, 581, 829, 885, 1298 |
| HpaI | GTTAAC | 1 cut(s) | 400 |
| HpaII | CCGG | 4 cut(s) | 428, 487, 1001, 1398 |
| HphI | GGTGA | 3 cut(s) | 800, 1008, 1085 |
| Hpy166II | GTNNAC | 2 cut(s) | 400, 533 |
| Hpy188I | TCNGA | 3 cut(s) | 358, 969, 1141 |
| Hpy188III | TCNNGA | 2 cut(s) | 146, 889 |
| Hpy8I | GTNNAC | 2 cut(s) | 400, 533 |
| Hpy99I | CGWCG | 3 cut(s) | 67, 743, 980 |
| HpyAV | CCTTC | 4 cut(s) | 186, 357, 546, 875 |
| HpyCH4III | ACNGT | 2 cut(s) | 500, 1175 |
| HpyCH4IV | ACGT | 3 cut(s) | 326, 1150, 1283 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 40, 452, 1130, 1246, 1417, 1486, 1495 |
| HpyF3I | CTNAG | 6 cut(s) | 81, 147, 247, 520, 636, 1042 |
| HpySE526I | ACGT | 3 cut(s) | 326, 1150, 1283 |
| Hsp92I | GRCGYC | 1 cut(s) | 562 |
| Hsp92II | CATG | 5 cut(s) | 410, 700, 844, 1060, 1306 |
| HspAI | GCGC | 4 cut(s) | 490, 562, 1133, 1478 |
| KasI | GGCGCC | 1 cut(s) | 561 |
| KspAI | GTTAAC | 1 cut(s) | 400 |
| Kzo9I | GATC | 3 cut(s) | 525, 549, 620 |
| LmnI | GCTCC | 1 cut(s) | 1038 |
| Lsp1109I | GCAGC | 4 cut(s) | 1171, 1414, 1498, 1510 |
| LweI | GCATC | 2 cut(s) | 1197, 1366 |
| MaeI | CTAG | 3 cut(s) | 264, 1031, 1421 |
| MaeII | ACGT | 3 cut(s) | 326, 1150, 1283 |
| MaeIII | GTNAC | 2 cut(s) | 734, 833 |
| MalI | GATC | 3 cut(s) | 527, 551, 622 |
| MboI | GATC | 3 cut(s) | 525, 549, 620 |
| MboII | GAAGA | 4 cut(s) | 280, 787, 854, 1216 |
| MfeI | CAATTG | 1 cut(s) | 545 |
| MhlI | GDGCHC | 6 cut(s) | 248, 320, 339, 486, 1043, 1437 |
| Mly113I | GGCGCC | 1 cut(s) | 562 |
| MlyI | GAGTC | 5 cut(s) | 151, 510, 838, 879, 1292 |
| Mph1103I | ATGCAT | 1 cut(s) | 694 |
| MseI | TTAA | 6 cut(s) | 399, 432, 687, 1371, 1382, 1394 |
| MspA1I | CMGCKG | 4 cut(s) | 40, 903, 1184, 1427 |
| MspI | CCGG | 4 cut(s) | 428, 487, 1001, 1398 |
| MspR9I | CCNGG | 3 cut(s) | 165, 428, 617 |
| MunI | CAATTG | 1 cut(s) | 545 |
| Mva1269I | GAATGC | 1 cut(s) | 637 |
| MvaI | CCWGG | 2 cut(s) | 165, 617 |
| MvnI | CGCG | 2 cut(s) | 333, 1478 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 40, 452, 1130, 1246, 1417, 1486, 1495 |
| NarI | GGCGCC | 1 cut(s) | 562 |
| NciI | CCSGG | 1 cut(s) | 428 |
| NcoI | CCATGG | 1 cut(s) | 1302 |
| NdeII | GATC | 3 cut(s) | 525, 549, 620 |
| NheI | GCTAGC | 1 cut(s) | 1420 |
| NlaIII | CATG | 5 cut(s) | 410, 700, 844, 1060, 1306 |
| NlaIV | GGNNCC | 3 cut(s) | 78, 485, 563 |
| NsiI | ATGCAT | 1 cut(s) | 694 |
| NspI | RCATGY | 1 cut(s) | 844 |
| PaeI | GCATGC | 1 cut(s) | 844 |
| PceI | AGGCCT | 3 cut(s) | 163, 217, 1391 |
| PctI | GAATGC | 1 cut(s) | 637 |
| PfeI | GAWTC | 3 cut(s) | 169, 299, 581 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 56 |
| PkrI | GCNGC | 7 cut(s) | 42, 543, 1186, 1426, 1429, 1488, 1500 |
| PleI | GAGTC | 5 cut(s) | 150, 510, 837, 879, 1292 |
| PluTI | GGCGCC | 1 cut(s) | 565 |
| PpsI | GAGTC | 5 cut(s) | 150, 510, 837, 879, 1292 |
| Psp124BI | GAGCTC | 3 cut(s) | 248, 1043, 1437 |
| Psp6I | CCWGG | 2 cut(s) | 163, 615 |
| PspFI | CCCAGC | 1 cut(s) | 1019 |
| PspGI | CCWGG | 2 cut(s) | 163, 615 |
| PspN4I | GGNNCC | 3 cut(s) | 78, 485, 563 |
| PspPI | GGNCC | 3 cut(s) | 894, 1006, 1363 |
| PstI | CTGCAG | 2 cut(s) | 1251, 1432 |
| PvuII | CAGCTG | 1 cut(s) | 1184 |
| RsaI | GTAC | 2 cut(s) | 329, 915 |
| RsaNI | GTAC | 2 cut(s) | 328, 914 |
| SacI | GAGCTC | 3 cut(s) | 248, 1043, 1437 |
| SaqAI | TTAA | 6 cut(s) | 399, 432, 687, 1371, 1382, 1394 |
| SatI | GCNGC | 7 cut(s) | 41, 542, 1185, 1425, 1428, 1487, 1499 |
| Sau3AI | GATC | 3 cut(s) | 525, 549, 620 |
| Sau96I | GGNCC | 3 cut(s) | 894, 1006, 1363 |
| SchI | GAGTC | 5 cut(s) | 151, 510, 838, 879, 1292 |
| ScrFI | CCNGG | 3 cut(s) | 165, 428, 617 |
| SduI | GDGCHC | 6 cut(s) | 248, 320, 339, 486, 1043, 1437 |
| SfaNI | GCATC | 2 cut(s) | 1197, 1366 |
| SfcI | CTRYAG | 2 cut(s) | 1247, 1428 |
| SfoI | GGCGCC | 1 cut(s) | 563 |
| SgrAI | CRCCGGYG | 1 cut(s) | 486 |
| SinI | GGWCC | 1 cut(s) | 894 |
| SmlI | CTYRAG | 1 cut(s) | 887 |
| SmoI | CTYRAG | 1 cut(s) | 887 |
| SphI | GCATGC | 1 cut(s) | 844 |
| SseBI | AGGCCT | 3 cut(s) | 163, 217, 1391 |
| SsiI | CCGC | 7 cut(s) | 40, 331, 542, 897, 903, 1425, 1484 |
| SspDI | GGCGCC | 1 cut(s) | 561 |
| SspMI | CTAG | 3 cut(s) | 264, 1031, 1421 |
| SstI | GAGCTC | 3 cut(s) | 248, 1043, 1437 |
| StuI | AGGCCT | 3 cut(s) | 163, 217, 1391 |
| StyD4I | CCNGG | 3 cut(s) | 163, 426, 615 |
| StyI | CCWWGG | 2 cut(s) | 1194, 1302 |
| TaaI | ACNGT | 2 cut(s) | 500, 1175 |
| TaiI | ACGT | 3 cut(s) | 329, 1153, 1286 |
| TaqI | TCGA | 5 cut(s) | 200, 212, 773, 925, 975 |
| TauI | GCSGC | 3 cut(s) | 43, 544, 1427 |
| TfiI | GAWTC | 3 cut(s) | 169, 299, 581 |
| Tru1I | TTAA | 6 cut(s) | 399, 432, 687, 1371, 1382, 1394 |
| Tru9I | TTAA | 6 cut(s) | 399, 432, 687, 1371, 1382, 1394 |
| TscAI | CASTG | 6 cut(s) | 16, 31, 448, 505, 772, 993 |
| TseI | GCWGC | 4 cut(s) | 1184, 1427, 1486, 1498 |
| TspDTI | ATGAA | 8 cut(s) | 30, 498, 594, 713, 737, 819, 996, 1341 |
| TspGWI | ACGGA | 1 cut(s) | 125 |
| TspRI | CASTG | 6 cut(s) | 16, 31, 448, 505, 772, 993 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 1 cut(s) | 894 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 477 |
| XapI | RAATTY | 3 cut(s) | 700, 970, 1334 |
| XceI | RCATGY | 1 cut(s) | 844 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 623, 1054 |
| XspI | CTAG | 3 cut(s) | 264, 1031, 1421 |
| Zsp2I | ATGCAT | 1 cut(s) | 694 |