Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Forward (+)

26757274 .. 26761632

Gene Structure 4359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG165300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGGTGACACTGAGGAAGCTAACAGTGATATGATGCAAAGGCTTCAATCTTCCTTTGGAACATCTTCATCATCAATTCTGAAACAGCCTTTGTCTATGGACCAACTGAACATACCCCAATTCAACACTTCACAAATTCGCTCACGCCATTTTGCGCAGAGCTTTACTGGGGATAGCAGCAAAAGATCGGGGATACCACCCTCACACCCAAACCACATCCCACCACTTTCGCCTTATTCTCAGATCCCGGTGGCAAGGCCGATTAACCAGACAATGGGTTCGCAGAATTTTAGCCCAGTAGGACCCACCCATTCGCGATCATTGTCTCAACCAGCCTTCTTTTCCCTTGATTCACTGCCCCCATTAAGCCCATCGCCCTATCGTGAATCCCCGTCCACCTCCATGTCGGAGTCCGTGGCTGTGGATGTGTCAATGGAGGATAGGGATGCAAGTTCACATTCCTTGCTGCCCCCATCACCTTTTTCCAGGGGTAATTTCTCGAGGGTCGGTGAGACTTTGCCCCCTCGCAAAGCTCATAGGAGGTCTAATAGTGATATACCATTTGGGTTTTCTACCATGATGCAACAACAATCTCTACCCCCCATTGCTCCCGTGAGGGGTTCGGGTGGTTTGGACCTGTCAATGTCTGGTGCAGAAAATTCAGGGATGGTTAAGCCAGCTCAGTTGGTTAAAAAGGAATCCAGTTGGGAAAGAGCTGGCGATAACAATGCGGAAGGGACGGGTGAGAGGAAGTCTGAAGGGGAAGTAGTGGATGATTTGTTTTCTGCATATATGAATTTGGATAGCATTGATGCTTTGAACTCTTCGGGGACTGATGACAAGAATGGTAATGAGAATCGTGAGGATATGGACAGTAGTAGAGCAAGTGGGACTAAGACAAATTGTGACAGCAGTGATAATGAAGTGGAAAGCAGTGTTAATGAAAGTGGAGGCATGAATAGACCGGGACTGAATATTATGACTGACATGAGGGAAGGGATTAAAAGGAGTGCGGGGGGAGATATTGCGCCGACCACTCGACACTTCAGAAGTGTCTCCATGGACAGTTTTATGGGTAAGCTGCAATTTGGTGATGAGTCACCTAAACTACCGCCTTCACCAGGAACTCGCCCAGGACAACTTTCCCCCAGCAATTCAATTGATATGAATTCAAATGCCTTTAGCTTGGAATTTGGAAACGGTGAGTTCAGTGGGGCTGAAATGAAGAAAATTATGGCTAATGAAAAGCTTGCCGAGATTGCAATGACCGATCCAAAGCGTGCAAAAAGGATATTGGCAAATCGTCAATCAGCTGCCCGTTCCAAAGAACGGAAGATGCGCTACATTTCAGAGTTGGAACACAAGGTTCAGACTCTACAGACAGAAGCAACAACACTGTCTGCACAGCTTACACTATTACAGAGAGATTCTGTTGGTCTCAGTAACCAGAATAATGAGTTGAAGTTTCGCCTTCAAGCTATGGAACAACAGGCTCAACTCAGAGATGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

504

Amino Acids

54.88

Weight (kDa)

5.87

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	423 - 475	7.6e-08	Basic region leucine zipper
bZIP_1	PF00170	426 - 480	1.5e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccII	CGCG	1 cut(s)	316
AciI	CCGC	3 cut(s)	731, 1013, 1112
AclWI	GGATC	2 cut(s)	238, 1265
AcsI	RAATTY	6 cut(s)	135, 286, 658, 796, 1168, 1190
AcuI	CTGAAG	2 cut(s)	777, 1030
AfiI	CCNNNNNNNGG	4 cut(s)	274, 617, 1121, 1329
AgsI	TTSAA	7 cut(s)	47, 124, 820, 1158, 1173, 1462, 1475
AjnI	CCWGG	3 cut(s)	485, 1120, 1132
Alw26I	GTCTC	4 cut(s)	330, 506, 1060, 1442
AlwI	GGATC	2 cut(s)	238, 1265
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	4 cut(s)	177, 466, 1081, 1313
ApoI	RAATTY	6 cut(s)	135, 286, 658, 796, 1168, 1190
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	3 cut(s)	157, 1030, 1341
AspS9I	GGNCC	3 cut(s)	100, 302, 634
AsuC2I	CCSGG	2 cut(s)	248, 966
AsuHPI	GGTGA	8 cut(s)	17, 468, 521, 755, 1092, 1103, 1110, 1214
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	3 cut(s)	100, 302, 634
BarI	GAAGNNNNNNTAC	2 cut(s)	1325, 1357
BbvI	GCAGC	4 cut(s)	189, 453, 1068, 1300
BccI	CCATC	4 cut(s)	379, 481, 661, 1499
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	3 cut(s)	487, 1122, 1134
BciVI	GTATCC	1 cut(s)	186
BcnI	CCSGG	2 cut(s)	248, 966
BcoDI	GTCTC	4 cut(s)	330, 506, 1060, 1442
BfmI	CTRYAG	1 cut(s)	1376
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	4 cut(s)	178, 467, 1082, 1314
BlsI	GCNGC	4 cut(s)	179, 468, 1083, 1315
Bme1390I	CCNGG	5 cut(s)	248, 487, 966, 1122, 1134
Bme18I	GGWCC	3 cut(s)	100, 302, 634
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	3 cut(s)	100, 302, 634
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	5 cut(s)	248, 487, 966, 1122, 1134
BmrI	ACTGGG	2 cut(s)	177, 290
BmsI	GCATC	5 cut(s)	24, 436, 570, 802, 1326
BmuI	ACTGGG	2 cut(s)	177, 290
BpuMI	CCSGG	2 cut(s)	248, 966
BsaI	GGTCTC	1 cut(s)	1442
BsaJI	CCNNGG	4 cut(s)	414, 486, 1059, 1132
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 617, 1121, 1329
Bse1I	ACTGG	3 cut(s)	172, 296, 702
Bse3DI	GCAATG	2 cut(s)	603, 1269
BseBI	CCWGG	3 cut(s)	487, 1122, 1134
BseDI	CCNNGG	4 cut(s)	414, 486, 1059, 1132
BseGI	GGATG	5 cut(s)	216, 430, 451, 672, 778
BseLI	CCNNNNNNNGG	4 cut(s)	274, 617, 1121, 1329
BseMI	GCAATG	2 cut(s)	603, 1269
BseMII	CTCAG	4 cut(s)	254, 695, 1453, 1513
BseNI	ACTGG	3 cut(s)	172, 296, 702
BseXI	GCAGC	4 cut(s)	189, 453, 1068, 1300
BseYI	CCCAGC	1 cut(s)	1148
BsgI	GTGCAG	2 cut(s)	672, 1386
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	248, 965
BslFI	GGGAC	4 cut(s)	751, 844, 904, 981
BslI	CCNNNNNNNGG	4 cut(s)	274, 617, 1121, 1329
BsmAI	GTCTC	4 cut(s)	330, 506, 1060, 1442
BsmFI	GGGAC	4 cut(s)	751, 844, 904, 981
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	1442
BsoBI	CYCGRG	1 cut(s)	499
Bsp143I	GATC	4 cut(s)	185, 243, 317, 1270
Bsp19I	CCATGG	1 cut(s)	1059
Bsp68I	TCGCGA	1 cut(s)	316
BspACI	CCGC	3 cut(s)	731, 1013, 1112
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	5 cut(s)	4, 253, 694, 1452, 1512
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	238, 1265
BspTNI	GGTCTC	1 cut(s)	1442
BsrDI	GCAATG	2 cut(s)	603, 1269
BsrI	ACTGG	3 cut(s)	172, 296, 702
BssECI	CCNNGG	4 cut(s)	414, 486, 1059, 1132
BssMI	GATC	4 cut(s)	185, 243, 317, 1270
BssT1I	CCWWGG	1 cut(s)	1059
Bst2UI	CCWGG	3 cut(s)	487, 1122, 1134
Bst4CI	ACNGT	5 cut(s)	26, 875, 1067, 1202, 1398
Bst6I	CTCTTC	1 cut(s)	829
BstC8I	GCNNGC	4 cut(s)	678, 718, 1251, 1281
BstDEI	CTNAG	6 cut(s)	12, 240, 681, 894, 1439, 1499
BstDSI	CCRYGG	2 cut(s)	414, 1059
BstENI	CCTNNNNNAGG	1 cut(s)	1119
BstF5I	GGATG	5 cut(s)	216, 430, 451, 672, 778
BstFNI	CGCG	1 cut(s)	316
BstHHI	GCGC	3 cut(s)	157, 1030, 1341
BstKTI	GATC	4 cut(s)	188, 246, 320, 1273
BstMAI	GTCTC	4 cut(s)	330, 506, 1060, 1442
BstMBI	GATC	4 cut(s)	185, 243, 317, 1270
BstMWI	GCNNNNNNNGC	1 cut(s)	1259
BstNI	CCWGG	3 cut(s)	487, 1122, 1134
BstSCI	CCNGG	5 cut(s)	246, 485, 964, 1120, 1132
BstSFI	CTRYAG	1 cut(s)	1376
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	4 cut(s)	189, 453, 1068, 1300
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	259
BtgI	CCRYGG	2 cut(s)	414, 1059
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	5 cut(s)	216, 430, 451, 672, 778
BtsI	GCAGTG	3 cut(s)	353, 919, 940
BtsIMutI	CAGTG	7 cut(s)	9, 31, 353, 919, 940, 1216, 1394
BtuMI	TCGCGA	1 cut(s)	316
Cac8I	GCNNGC	4 cut(s)	678, 718, 1251, 1281
CfoI	GCGC	3 cut(s)	157, 1030, 1341
Cfr13I	GGNCC	3 cut(s)	100, 302, 634
CviAII	CATG	5 cut(s)	403, 577, 955, 988, 1060
DdeI	CTNAG	6 cut(s)	12, 240, 681, 894, 1439, 1499
DpnI	GATC	4 cut(s)	187, 245, 319, 1272
DpnII	GATC	4 cut(s)	185, 243, 317, 1270
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	1059
Eco31I	GGTCTC	1 cut(s)	1442
Eco47I	GGWCC	3 cut(s)	100, 302, 634
Eco57I	CTGAAG	2 cut(s)	777, 1030
Eco88I	CYCGRG	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	1119
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	1168
EcoRII	CCWGG	3 cut(s)	485, 1120, 1132
EcoT14I	CCWWGG	1 cut(s)	1059
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	5 cut(s)	406, 580, 958, 991, 1063
FaqI	GGGAC	4 cut(s)	751, 844, 904, 981
FatI	CATG	5 cut(s)	402, 576, 954, 987, 1059
FauI	CCCGC	1 cut(s)	1006
Fnu4HI	GCNGC	4 cut(s)	178, 467, 1082, 1314
FokI	GGATG	5 cut(s)	203, 437, 458, 679, 785
Fsp4HI	GCNGC	4 cut(s)	178, 467, 1082, 1314
FspI	TGCGCA	1 cut(s)	156
GlaI	GCGC	3 cut(s)	156, 1029, 1340
GluI	GCNGC	4 cut(s)	178, 467, 1082, 1314
GsaI	CCCAGC	1 cut(s)	1152
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	2 cut(s)	248, 965
HhaI	GCGC	3 cut(s)	157, 1030, 1341
Hin1II	CATG	5 cut(s)	406, 580, 958, 991, 1063
Hin6I	GCGC	3 cut(s)	155, 1028, 1339
HinP1I	GCGC	3 cut(s)	155, 1028, 1339
HindIII	AAGCTT	1 cut(s)	1247
HinfI	GANTC	8 cut(s)	350, 386, 410, 698, 856, 1097, 1372, 1427
HpaII	CCGG	2 cut(s)	248, 965
HphI	GGTGA	8 cut(s)	17, 468, 521, 755, 1092, 1103, 1110, 1214
Hpy166II	GTNNAC	2 cut(s)	396, 455
Hpy188I	TCNGA	8 cut(s)	81, 243, 409, 757, 1049, 1351, 1371, 1502
Hpy188III	TCNNGA	4 cut(s)	315, 383, 499, 860
Hpy8I	GTNNAC	2 cut(s)	396, 455
HpyAV	CCTTC	6 cut(s)	346, 728, 752, 989, 1125, 1481
HpyCH4III	ACNGT	5 cut(s)	26, 875, 1067, 1202, 1398
HpyCH4V	TGCA	9 cut(s)	37, 449, 583, 653, 788, 1084, 1262, 1283, 1403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1259
HpyF3I	CTNAG	6 cut(s)	12, 240, 681, 894, 1439, 1499
Hsp92II	CATG	5 cut(s)	406, 580, 958, 991, 1063
HspAI	GCGC	3 cut(s)	155, 1028, 1339
Kzo9I	GATC	4 cut(s)	185, 243, 317, 1270
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	4 cut(s)	189, 453, 1068, 1300
LweI	GCATC	5 cut(s)	24, 436, 570, 802, 1326
MaeIII	GTNAC	4 cut(s)	5, 905, 1098, 1442
MalI	GATC	4 cut(s)	187, 245, 319, 1272
MboI	GATC	4 cut(s)	185, 243, 317, 1270
MboII	GAAGA	5 cut(s)	42, 57, 816, 1237, 1345
MfeI	CAATTG	1 cut(s)	1158
MflI	RGATCY	1 cut(s)	243
MlyI	GAGTC	3 cut(s)	419, 1106, 1366
MmeI	TCCRAC	2 cut(s)	387, 1335
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	6 cut(s)	264, 365, 672, 690, 939, 1002
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	1313
MspI	CCGG	2 cut(s)	248, 965
MspR9I	CCNGG	5 cut(s)	248, 487, 966, 1122, 1134
MunI	CAATTG	1 cut(s)	1158
MvaI	CCWGG	3 cut(s)	487, 1122, 1134
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	1259
NciI	CCSGG	2 cut(s)	248, 966
NcoI	CCATGG	1 cut(s)	1059
NdeII	GATC	4 cut(s)	185, 243, 317, 1270
NlaIII	CATG	5 cut(s)	406, 580, 958, 991, 1063
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	1279
NmuCI	GTSAC	3 cut(s)	5, 905, 1098
NruI	TCGCGA	1 cut(s)	316
NsbI	TGCGCA	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	5 cut(s)	350, 386, 698, 856, 1427
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	179, 468, 1083, 1315
PleI	GAGTC	3 cut(s)	418, 1105, 1366
PpsI	GAGTC	3 cut(s)	418, 1105, 1366
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	485, 1120, 1132
PspFI	CCCAGC	1 cut(s)	1148
PspGI	CCWGG	3 cut(s)	485, 1120, 1132
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	100, 302, 634
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	1313
RruI	TCGCGA	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	6 cut(s)	264, 365, 672, 690, 939, 1002
SatI	GCNGC	4 cut(s)	178, 467, 1082, 1314
Sau3AI	GATC	4 cut(s)	185, 243, 317, 1270
Sau96I	GGNCC	3 cut(s)	100, 302, 634
SchI	GAGTC	3 cut(s)	419, 1106, 1366
ScrFI	CCNGG	5 cut(s)	248, 487, 966, 1122, 1134
SfaNI	GCATC	5 cut(s)	24, 436, 570, 802, 1326
SfcI	CTRYAG	1 cut(s)	1376
Sfr274I	CTCGAG	1 cut(s)	499
SinI	GGWCC	3 cut(s)	100, 302, 634
SlaI	CTCGAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
SsiI	CCGC	3 cut(s)	731, 1013, 1112
SspI	AATATT	1 cut(s)	976
StyD4I	CCNGG	5 cut(s)	246, 485, 964, 1120, 1132
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	5 cut(s)	26, 875, 1067, 1202, 1398
TaqI	TCGA	2 cut(s)	500, 1039
TaqII	GACCGA	1 cut(s)	1283
TfiI	GAWTC	5 cut(s)	350, 386, 698, 856, 1427
Tru1I	TTAA	6 cut(s)	264, 365, 672, 690, 939, 1002
Tru9I	TTAA	6 cut(s)	264, 365, 672, 690, 939, 1002
TscAI	CASTG	7 cut(s)	16, 31, 360, 919, 940, 1216, 1401
TseFI	GTSAC	3 cut(s)	5, 905, 1098
TseI	GCWGC	4 cut(s)	177, 466, 1081, 1313
Tsp45I	GTSAC	3 cut(s)	5, 905, 1098
TspDTI	ATGAA	8 cut(s)	57, 809, 936, 957, 971, 1181, 1238, 1257
TspGWI	ACGGA	2 cut(s)	403, 1345
TspRI	CASTG	7 cut(s)	16, 31, 360, 919, 940, 1216, 1401
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	3 cut(s)	100, 302, 634
XagI	CCTNNNNNAGG	1 cut(s)	1119
XapI	RAATTY	6 cut(s)	135, 286, 658, 796, 1168, 1190
XhoI	CTCGAG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.