transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900 |
| fragaria_vesca | FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831 |
| malus_domestica | MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1 |
| prunus_persica | Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1 |
| pyrus_communis | pycom08g01400 pycom08g01410 pycom15g01300 |
| rosa_chinensis | RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431 |
| rosa_laevigata | RLG00000011172 RLG00000013914 |
| rosa_multiflora | Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165790 Rroxscaffold_7G00199840 |
| rosa_rugosa | Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200 |
| rosa_samantha | Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300 |
| rosa_wichuraiana | Rw6G013910 Rw6G036950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1168 |
| AccII | CGCG | 1 cut(s) | 871 |
| AciI | CCGC | 8 cut(s) | 338, 515, 645, 956, 1168, 1429, 1508, 1523 |
| AclWI | GGATC | 2 cut(s) | 610, 1103 |
| AcsI | RAATTY | 7 cut(s) | 124, 199, 331, 682, 925, 1301, 1386 |
| AcuI | CTGAAG | 1 cut(s) | 965 |
| AdeI | CACNNNGTG | 2 cut(s) | 989, 1204 |
| AfaI | GTAC | 1 cut(s) | 296 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 297, 334, 435, 452, 1167 |
| AgsI | TTSAA | 9 cut(s) | 228, 822, 900, 925, 1048, 1300, 1313, 1425, 1449 |
| AjnI | CCWGG | 1 cut(s) | 1242 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 547, 579 |
| AluBI | AGCT | 9 cut(s) | 207, 546, 589, 1060, 1087, 1100, 1136, 1151, 1444 |
| AluI | AGCT | 9 cut(s) | 207, 546, 589, 1060, 1087, 1100, 1136, 1151, 1444 |
| Alw21I | GWGCWC | 1 cut(s) | 209 |
| Alw26I | GTCTC | 4 cut(s) | 11, 28, 243, 402 |
| AlwI | GGATC | 2 cut(s) | 610, 1103 |
| Ama87I | CYCGRG | 1 cut(s) | 112 |
| AoxI | GGCC | 4 cut(s) | 173, 426, 583, 1356 |
| ApoI | RAATTY | 7 cut(s) | 124, 199, 331, 682, 925, 1301, 1386 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1418, 1450 |
| AseI | ATTAAT | 1 cut(s) | 1452 |
| AspLEI | GCGC | 4 cut(s) | 537, 871, 873, 1333 |
| AspS9I | GGNCC | 5 cut(s) | 325, 426, 465, 583, 1372 |
| AsuC2I | CCSGG | 3 cut(s) | 299, 582, 714 |
| AsuHPI | GGTGA | 9 cut(s) | 376, 415, 604, 629, 770, 853, 872, 975, 1052 |
| AsuNHI | GCTAGC | 1 cut(s) | 542 |
| AvaI | CYCGRG | 1 cut(s) | 112 |
| AvaII | GGWCC | 3 cut(s) | 325, 465, 1372 |
| BanII | GRGCYC | 3 cut(s) | 113, 209, 306 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 133, 165, 1163, 1195 |
| BbsI | GAAGAC | 1 cut(s) | 1301 |
| Bbv12I | GWGCWC | 1 cut(s) | 209 |
| BbvCI | CCTCAGC | 1 cut(s) | 720 |
| BccI | CCATC | 5 cut(s) | 253, 545, 608, 995, 1602 |
| BceAI | ACGGC | 1 cut(s) | 466 |
| BciT130I | CCWGG | 1 cut(s) | 1244 |
| BciVI | GTATCC | 1 cut(s) | 152 |
| BcnI | CCSGG | 3 cut(s) | 299, 582, 714 |
| BcoDI | GTCTC | 4 cut(s) | 11, 28, 243, 402 |
| BfaI | CTAG | 2 cut(s) | 543, 987 |
| BfmI | CTRYAG | 4 cut(s) | 886, 1214, 1395, 1472 |
| BfuI | GTATCC | 1 cut(s) | 152 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 181 |
| BlpI | GCTNAGC | 1 cut(s) | 1617 |
| Bme1390I | CCNGG | 4 cut(s) | 299, 582, 714, 1244 |
| Bme18I | GGWCC | 3 cut(s) | 325, 465, 1372 |
| BmeT110I | CYCGRG | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 5 cut(s) | 325, 426, 465, 583, 1372 |
| BmiI | GGNNCC | 3 cut(s) | 303, 327, 742 |
| BmrFI | CCNGG | 4 cut(s) | 299, 582, 714, 1244 |
| BmsI | GCATC | 3 cut(s) | 1164, 1333, 1485 |
| BmtI | GCTAGC | 1 cut(s) | 546 |
| BpiI | GAAGAC | 1 cut(s) | 1301 |
| BpmI | CTGGAG | 1 cut(s) | 1386 |
| Bpu10I | CCTNAGC | 2 cut(s) | 208, 720 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1617 |
| BpuMI | CCSGG | 3 cut(s) | 299, 582, 714 |
| BsaI | GGTCTC | 2 cut(s) | 28, 402 |
| BsaJI | CCNNGG | 6 cut(s) | 306, 348, 446, 1161, 1242, 1317 |
| BsaWI | WCCGGW | 1 cut(s) | 400 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1449, 1479 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 297, 334, 435, 452, 1167 |
| Bse118I | RCCGGY | 1 cut(s) | 428 |
| Bse1I | ACTGG | 1 cut(s) | 1369 |
| Bse3DI | GCAATG | 1 cut(s) | 1615 |
| BseBI | CCWGG | 1 cut(s) | 1244 |
| BseDI | CCNNGG | 6 cut(s) | 306, 348, 446, 1161, 1242, 1317 |
| BseGI | GGATG | 3 cut(s) | 346, 619, 664 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 297, 334, 435, 452, 1167 |
| BseMI | GCAATG | 1 cut(s) | 1615 |
| BseMII | CTCAG | 7 cut(s) | 209, 222, 254, 398, 711, 1023, 1212 |
| BseNI | ACTGG | 1 cut(s) | 1369 |
| BsePI | GCGCGC | 1 cut(s) | 869 |
| BseRI | GAGGAG | 3 cut(s) | 368, 463, 1422 |
| BseYI | CCCAGC | 2 cut(s) | 958, 1437 |
| Bsh1236I | CGCG | 1 cut(s) | 871 |
| BshFI | GGCC | 4 cut(s) | 175, 428, 585, 1358 |
| BsiHKAI | GWGCWC | 1 cut(s) | 209 |
| BsiHKCI | CYCGRG | 1 cut(s) | 112 |
| BsiSI | CCGG | 5 cut(s) | 298, 401, 429, 581, 713 |
| BslFI | GGGAC | 3 cut(s) | 468, 1277, 1420 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 297, 334, 435, 452, 1167 |
| BsmAI | GTCTC | 4 cut(s) | 11, 28, 243, 402 |
| BsmBI | CGTCTC | 1 cut(s) | 11 |
| BsmFI | GGGAC | 3 cut(s) | 468, 1277, 1420 |
| BsnI | GGCC | 4 cut(s) | 175, 428, 585, 1358 |
| Bso31I | GGTCTC | 2 cut(s) | 28, 402 |
| BsoBI | CYCGRG | 1 cut(s) | 112 |
| Bsp1286I | GDGCHC | 3 cut(s) | 113, 209, 306 |
| Bsp143I | GATC | 2 cut(s) | 602, 1108 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1617 |
| Bsp19I | CCATGG | 1 cut(s) | 348 |
| BspACI | CCGC | 8 cut(s) | 338, 515, 645, 956, 1168, 1429, 1508, 1523 |
| BspANI | GGCC | 4 cut(s) | 175, 428, 585, 1358 |
| BspCNI | CTCAG | 7 cut(s) | 208, 221, 253, 397, 712, 1022, 1213 |
| BspFNI | CGCG | 1 cut(s) | 871 |
| BspLI | GGNNCC | 3 cut(s) | 303, 327, 742 |
| BspMAI | CTGCAG | 2 cut(s) | 1218, 1399 |
| BspOI | GCTAGC | 1 cut(s) | 546 |
| BspPI | GGATC | 2 cut(s) | 610, 1103 |
| BspTNI | GGTCTC | 2 cut(s) | 28, 402 |
| BsrBI | CCGCTC | 1 cut(s) | 1168 |
| BsrDI | GCAATG | 1 cut(s) | 1615 |
| BsrFI | RCCGGY | 1 cut(s) | 428 |
| BsrI | ACTGG | 1 cut(s) | 1369 |
| BssAI | RCCGGY | 1 cut(s) | 428 |
| BssECI | CCNNGG | 6 cut(s) | 306, 348, 446, 1161, 1242, 1317 |
| BssHII | GCGCGC | 1 cut(s) | 869 |
| BssMI | GATC | 2 cut(s) | 602, 1108 |
| BssT1I | CCWWGG | 3 cut(s) | 348, 1161, 1317 |
| Bst2UI | CCWGG | 1 cut(s) | 1244 |
| Bst4CI | ACNGT | 4 cut(s) | 473, 877, 887, 1142 |
| Bst6I | CTCTTC | 2 cut(s) | 824, 839 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1213 |
| BstC8I | GCNNGC | 4 cut(s) | 430, 544, 587, 871 |
| BstDSI | CCRYGG | 1 cut(s) | 348 |
| BstF5I | GGATG | 3 cut(s) | 346, 619, 664 |
| BstFNI | CGCG | 1 cut(s) | 871 |
| BstHHI | GCGC | 4 cut(s) | 537, 871, 873, 1333 |
| BstKTI | GATC | 2 cut(s) | 605, 1111 |
| BstMAI | GTCTC | 4 cut(s) | 11, 28, 243, 402 |
| BstMBI | GATC | 2 cut(s) | 602, 1108 |
| BstNI | CCWGG | 1 cut(s) | 1244 |
| BstNSI | RCATGY | 1 cut(s) | 1435 |
| BstSCI | CCNGG | 4 cut(s) | 297, 580, 712, 1242 |
| BstSFI | CTRYAG | 4 cut(s) | 886, 1214, 1395, 1472 |
| BstUI | CGCG | 1 cut(s) | 871 |
| BstV2I | GAAGAC | 1 cut(s) | 1301 |
| BstX2I | RGATCY | 1 cut(s) | 1108 |
| BstYI | RGATCY | 1 cut(s) | 1108 |
| BsuI | GTATCC | 1 cut(s) | 152 |
| BsuRI | GGCC | 4 cut(s) | 175, 428, 585, 1358 |
| BtgI | CCRYGG | 1 cut(s) | 348 |
| BtsCI | GGATG | 3 cut(s) | 346, 619, 664 |
| BtsIMutI | CAGTG | 2 cut(s) | 478, 883 |
| Cac8I | GCNNGC | 4 cut(s) | 430, 544, 587, 871 |
| CfoI | GCGC | 4 cut(s) | 537, 871, 873, 1333 |
| Cfr10I | RCCGGY | 1 cut(s) | 428 |
| Cfr13I | GGNCC | 5 cut(s) | 325, 426, 465, 583, 1372 |
| Csp6I | GTAC | 1 cut(s) | 295 |
| CviQI | GTAC | 1 cut(s) | 295 |
| DpnI | GATC | 2 cut(s) | 604, 1110 |
| DpnII | GATC | 2 cut(s) | 602, 1108 |
| DraI | TTTAAA | 1 cut(s) | 1350 |
| DraIII | CACNNNGTG | 2 cut(s) | 989, 1204 |
| Eam1104I | CTCTTC | 2 cut(s) | 824, 839 |
| EarI | CTCTTC | 2 cut(s) | 824, 839 |
| EciI | GGCGGA | 1 cut(s) | 353 |
| Ecl136II | GAGCTC | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 3 cut(s) | 348, 1161, 1317 |
| Eco147I | AGGCCT | 2 cut(s) | 175, 1358 |
| Eco24I | GRGCYC | 3 cut(s) | 113, 209, 306 |
| Eco31I | GGTCTC | 2 cut(s) | 28, 402 |
| Eco47I | GGWCC | 3 cut(s) | 325, 465, 1372 |
| Eco53kI | GAGCTC | 1 cut(s) | 207 |
| Eco57I | CTGAAG | 1 cut(s) | 965 |
| Eco88I | CYCGRG | 1 cut(s) | 112 |
| EcoICRI | GAGCTC | 1 cut(s) | 207 |
| EcoRI | GAATTC | 2 cut(s) | 124, 331 |
| EcoRII | CCWGG | 1 cut(s) | 1242 |
| EcoT14I | CCWWGG | 3 cut(s) | 348, 1161, 1317 |
| EcoT38I | GRGCYC | 3 cut(s) | 113, 209, 306 |
| ErhI | CCWWGG | 3 cut(s) | 348, 1161, 1317 |
| Esp3I | CGTCTC | 1 cut(s) | 11 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1404, 1436 |
| FaqI | GGGAC | 3 cut(s) | 468, 1277, 1420 |
| FauI | CCCGC | 1 cut(s) | 638 |
| FokI | GGATG | 3 cut(s) | 353, 626, 671 |
| FriOI | GRGCYC | 3 cut(s) | 113, 209, 306 |
| FspBI | CTAG | 2 cut(s) | 543, 987 |
| GlaI | GCGC | 4 cut(s) | 536, 870, 872, 1332 |
| GsaI | CCCAGC | 2 cut(s) | 962, 1441 |
| GsuI | CTGGAG | 1 cut(s) | 1386 |
| HaeIII | GGCC | 4 cut(s) | 175, 428, 585, 1358 |
| HapII | CCGG | 5 cut(s) | 298, 401, 429, 581, 713 |
| HhaI | GCGC | 4 cut(s) | 537, 871, 873, 1333 |
| Hin6I | GCGC | 4 cut(s) | 535, 869, 871, 1331 |
| HinP1I | GCGC | 4 cut(s) | 535, 869, 871, 1331 |
| HindIII | AAGCTT | 1 cut(s) | 1085 |
| HinfI | GANTC | 7 cut(s) | 280, 356, 489, 502, 523, 1265, 1625 |
| HpaII | CCGG | 5 cut(s) | 298, 401, 429, 581, 713 |
| HphI | GGTGA | 9 cut(s) | 376, 415, 604, 629, 770, 853, 872, 975, 1052 |
| Hpy166II | GTNNAC | 2 cut(s) | 86, 367 |
| Hpy188III | TCNNGA | 1 cut(s) | 210 |
| Hpy8I | GTNNAC | 2 cut(s) | 86, 367 |
| Hpy99I | CGWCG | 3 cut(s) | 17, 437, 514 |
| HpyAV | CCTTC | 6 cut(s) | 159, 186, 550, 830, 1406, 1599 |
| HpyCH4III | ACNGT | 4 cut(s) | 473, 877, 887, 1142 |
| HpyCH4IV | ACGT | 1 cut(s) | 1117 |
| HpyCH4V | TGCA | 9 cut(s) | 1052, 1121, 1207, 1216, 1258, 1397, 1498, 1561, 1633 |
| HpySE526I | ACGT | 1 cut(s) | 1117 |
| HspAI | GCGC | 4 cut(s) | 535, 869, 871, 1331 |
| KroI | GCCGGC | 1 cut(s) | 428 |
| KroNI | GCCGGC | 1 cut(s) | 430 |
| Kzo9I | GATC | 2 cut(s) | 602, 1108 |
| LmnI | GCTCC | 6 cut(s) | 301, 746, 891, 1165, 1321, 1470 |
| LweI | GCATC | 3 cut(s) | 1164, 1333, 1485 |
| MaeI | CTAG | 2 cut(s) | 543, 987 |
| MaeII | ACGT | 1 cut(s) | 1117 |
| MaeIII | GTNAC | 4 cut(s) | 403, 908, 981, 1246 |
| MalI | GATC | 2 cut(s) | 604, 1110 |
| MbiI | CCGCTC | 1 cut(s) | 1168 |
| MboI | GATC | 2 cut(s) | 602, 1108 |
| MboII | GAAGA | 6 cut(s) | 306, 841, 856, 947, 1183, 1301 |
| MfeI | CAATTG | 1 cut(s) | 1053 |
| MflI | RGATCY | 1 cut(s) | 1108 |
| MhlI | GDGCHC | 3 cut(s) | 113, 209, 306 |
| MlyI | GAGTC | 4 cut(s) | 289, 365, 1259, 1634 |
| MmeI | TCCRAC | 3 cut(s) | 492, 904, 1492 |
| MroNI | GCCGGC | 1 cut(s) | 428 |
| MseI | TTAA | 3 cut(s) | 1338, 1349, 1452 |
| MslI | CAYNNNNRTG | 1 cut(s) | 378 |
| MspA1I | CMGCKG | 3 cut(s) | 589, 958, 1151 |
| MspI | CCGG | 5 cut(s) | 298, 401, 429, 581, 713 |
| MspR9I | CCNGG | 4 cut(s) | 299, 582, 714, 1244 |
| MunI | CAATTG | 1 cut(s) | 1053 |
| MvaI | CCWGG | 1 cut(s) | 1244 |
| MvnI | CGCG | 1 cut(s) | 871 |
| NaeI | GCCGGC | 1 cut(s) | 430 |
| NciI | CCSGG | 3 cut(s) | 299, 582, 714 |
| NcoI | CCATGG | 1 cut(s) | 348 |
| NdeII | GATC | 2 cut(s) | 602, 1108 |
| NgoMIV | GCCGGC | 1 cut(s) | 428 |
| NheI | GCTAGC | 1 cut(s) | 542 |
| NlaIV | GGNNCC | 3 cut(s) | 303, 327, 742 |
| NmeAIII | GCCGAG | 3 cut(s) | 132, 287, 473 |
| NmuCI | GTSAC | 2 cut(s) | 403, 981 |
| NspI | RCATGY | 1 cut(s) | 1435 |
| PauI | GCGCGC | 1 cut(s) | 869 |
| PceI | AGGCCT | 2 cut(s) | 175, 1358 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 110, 572 |
| PdiI | GCCGGC | 1 cut(s) | 430 |
| PfeI | GAWTC | 3 cut(s) | 489, 502, 523 |
| PleI | GAGTC | 4 cut(s) | 288, 364, 1259, 1633 |
| PpsI | GAGTC | 4 cut(s) | 288, 364, 1259, 1633 |
| PshBI | ATTAAT | 1 cut(s) | 1452 |
| Psp124BI | GAGCTC | 1 cut(s) | 209 |
| Psp6I | CCWGG | 1 cut(s) | 1242 |
| PspFI | CCCAGC | 2 cut(s) | 958, 1437 |
| PspGI | CCWGG | 1 cut(s) | 1242 |
| PspN4I | GGNNCC | 3 cut(s) | 303, 327, 742 |
| PspPI | GGNCC | 5 cut(s) | 325, 426, 465, 583, 1372 |
| PstI | CTGCAG | 2 cut(s) | 1218, 1399 |
| PsuI | RGATCY | 1 cut(s) | 1108 |
| PteI | GCGCGC | 1 cut(s) | 869 |
| PvuII | CAGCTG | 2 cut(s) | 589, 1151 |
| RsaI | GTAC | 1 cut(s) | 296 |
| RsaNI | GTAC | 1 cut(s) | 295 |
| RseI | CAYNNNNRTG | 1 cut(s) | 378 |
| SacI | GAGCTC | 1 cut(s) | 209 |
| SaqAI | TTAA | 3 cut(s) | 1338, 1349, 1452 |
| Sau3AI | GATC | 2 cut(s) | 602, 1108 |
| Sau96I | GGNCC | 5 cut(s) | 325, 426, 465, 583, 1372 |
| SchI | GAGTC | 4 cut(s) | 289, 365, 1259, 1634 |
| ScrFI | CCNGG | 4 cut(s) | 299, 582, 714, 1244 |
| SduI | GDGCHC | 3 cut(s) | 113, 209, 306 |
| SfaNI | GCATC | 3 cut(s) | 1164, 1333, 1485 |
| SfcI | CTRYAG | 4 cut(s) | 886, 1214, 1395, 1472 |
| SinI | GGWCC | 3 cut(s) | 325, 465, 1372 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 378 |
| SseBI | AGGCCT | 2 cut(s) | 175, 1358 |
| SsiI | CCGC | 8 cut(s) | 338, 515, 645, 956, 1168, 1429, 1508, 1523 |
| SspMI | CTAG | 2 cut(s) | 543, 987 |
| SstI | GAGCTC | 1 cut(s) | 209 |
| StuI | AGGCCT | 2 cut(s) | 175, 1358 |
| StyD4I | CCNGG | 4 cut(s) | 297, 580, 712, 1242 |
| StyI | CCWWGG | 3 cut(s) | 348, 1161, 1317 |
| TaaI | ACNGT | 4 cut(s) | 473, 877, 887, 1142 |
| TaiI | ACGT | 1 cut(s) | 1120 |
| TaqI | TCGA | 1 cut(s) | 930 |
| TaqII | GACCGA | 1 cut(s) | 384 |
| TauI | GCSGC | 3 cut(s) | 517, 1510, 1525 |
| TfiI | GAWTC | 3 cut(s) | 489, 502, 523 |
| Tru1I | TTAA | 3 cut(s) | 1338, 1349, 1452 |
| Tru9I | TTAA | 3 cut(s) | 1338, 1349, 1452 |
| TscAI | CASTG | 2 cut(s) | 478, 890 |
| TseFI | GTSAC | 2 cut(s) | 403, 981 |
| Tsp45I | GTSAC | 2 cut(s) | 403, 981 |
| TspDTI | ATGAA | 4 cut(s) | 168, 695, 719, 948 |
| TspRI | CASTG | 2 cut(s) | 478, 890 |
| VpaK11BI | GGWCC | 3 cut(s) | 325, 465, 1372 |
| VspI | ATTAAT | 1 cut(s) | 1452 |
| XapI | RAATTY | 7 cut(s) | 124, 199, 331, 682, 925, 1301, 1386 |
| XceI | RCATGY | 1 cut(s) | 1435 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1601 |
| XspI | CTAG | 2 cut(s) | 543, 987 |