Rh6BG475600
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
68188458 .. 68192211
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG475600.1

Sequence Viewer

Length: 1638 bp
ATGGAGGGCAGCGACGAGACGGGTAGGTTTGGGAGACCACATCATCATTTAGACATTCCCAATTTCAGTTCAGGTCAGATAGGTTTACCCATGAGGCAGTTATCGCCGAGCCCGAGTTCCGAGAATTCCAAAAGACTTGGTATCCCTCCTTCCCACCCTAACAACCCCATGAGGCCTTCATGGCAAATGGGTTCTCAGAATTTGAGCTCAGGAGGTTCGGCTCATTCAAGGTCTTTGTCTCAGCCATCTTTTTTCTCACTTGATAGTCTGCCTCCTTTGAGTCCTCTGACCTCGTACCGGGAGCCCTCGGCTTCTTCGCTTTCGGACCCGAATTCGGCGGATGTTTCCATGGAGGAGTCTGTGGTGAACTCTCATGCTCATGCTCAGTCGCTTCGGTCTCCGGTGACTGACAGCAATCCTTTTTGGGCCGGCGACGGGCTTCCTCCGAGGAGGGGACACAGGAGGTCCAACAGTGATGTGCCGTTGGGATTCTCGGCTGTGATTCAGTCGTCGCCGCAGTTGATTCCGATTGGGCGCAGGGCTAGCTTTGATGGGAAGGAGAGTTCGGGGATTGCGAAGCCGGGCCAGCTGGTGAGGCAAGGATCAAATGGGGATGGTGAAGTAATTGGGGATAGAAAATCGGGCGGGGAGGTTGTGGATGATTTGTTTAGTGCTTATATGAATTTAGAGAACATTGATAAAATGAACTCGCCGGGTGCTGAGGATAGTAGGGCAAGTGGCTCCAAGACAAATGGGGGTGAGAGTAGTGATAATGAGGTGGAGAGTGGGCTAAATGGCAAGTGGTCGGGTTCTGGTTTTTCAAATGAGAAGAGGGAAGGGGTGAAGAGGACTGCTGGTGGTGATGTTGCGCGCACCGTCCGACACTGTAGGAGCGTTTCAATGGATAGTTACATGGACAATTTGAATTTCGATGAAGAACTGCTGAAGCCTCTACCGCTGGGAAGTCAAGTGGGTCAGCAGTCACCTAGTGCTTCGGTAGATGGGAACTCAGCAAAGTTCAGCATGGAGTTTGGAAGTGGTGAGTTCAATGCAATTGAGCTGAAAAAGATTATGGAAAGTGAAAAGCTTTCGGAGATAGCTGTATCAGATCCTAAACGTGCAAAGAGGATTTTAGCTAACCGTCAGTCAGCTGCTCGTTCCAAGGAGCGGAAGATGCGATACATTGTAGAATTGGAACACAAAGTGCAAACTCTGCAGACTGAGGCAACCACTTTATCTGCCCAGGTTACTAAGTTGCAGAGGGACTCTATGGGTCTTACAAGTGAGAACAATGAGTTGAAATTTCGTCTTCAAGCCTTGGAGCAACAGGCGCAACTTAAAGATGCTTTAAATGAGGCCTTGACTGGAGAGGTCCAGCGACTTAGAATTTCTGCTGCAGAACTCGGAGGAGAAGGCAACCTTTCAAACCGCATGTCCCAGCAGCTTTCAATTAATCAACAAATGCTCCAACTACAGCAACTCAACCTCTACCAGATGCAGCAGCAGCCGCAGCAGCAGCAGCCGCAGCAGCAGCAGCAGCAAACTCAACAACAGATAATGCAGCAGCAGCCACAGCAAAATCAACTACCTTCCCATCAGCAGAATGGCAATGCTGCTAAGCATGAGTCAATGCAATAG

Protein Analysis

545

Amino Acids

59.58

Weight (kDa)

6.35

Isoelectric Point (pI)

61.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 369 - 421 2.2e-08 Basic region leucine zipper
bZIP_1 PF00170 372 - 430 4.4e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1168
AccII CGCG 1 cut(s) 871
AciI CCGC 8 cut(s) 338, 515, 645, 956, 1168, 1429, 1508, 1523
AclWI GGATC 2 cut(s) 610, 1103
AcsI RAATTY 7 cut(s) 124, 199, 331, 682, 925, 1301, 1386
AcuI CTGAAG 1 cut(s) 965
AdeI CACNNNGTG 2 cut(s) 989, 1204
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 5 cut(s) 297, 334, 435, 452, 1167
AgsI TTSAA 9 cut(s) 228, 822, 900, 925, 1048, 1300, 1313, 1425, 1449
AjnI CCWGG 1 cut(s) 1242
AloI GAACNNNNNNTCC 2 cut(s) 547, 579
AluBI AGCT 9 cut(s) 207, 546, 589, 1060, 1087, 1100, 1136, 1151, 1444
AluI AGCT 9 cut(s) 207, 546, 589, 1060, 1087, 1100, 1136, 1151, 1444
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 4 cut(s) 11, 28, 243, 402
AlwI GGATC 2 cut(s) 610, 1103
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 4 cut(s) 173, 426, 583, 1356
ApoI RAATTY 7 cut(s) 124, 199, 331, 682, 925, 1301, 1386
ArsI GACNNNNNNTTYG 2 cut(s) 1418, 1450
AseI ATTAAT 1 cut(s) 1452
AspLEI GCGC 4 cut(s) 537, 871, 873, 1333
AspS9I GGNCC 5 cut(s) 325, 426, 465, 583, 1372
AsuC2I CCSGG 3 cut(s) 299, 582, 714
AsuHPI GGTGA 9 cut(s) 376, 415, 604, 629, 770, 853, 872, 975, 1052
AsuNHI GCTAGC 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 3 cut(s) 325, 465, 1372
BanII GRGCYC 3 cut(s) 113, 209, 306
BarI GAAGNNNNNNTAC 4 cut(s) 133, 165, 1163, 1195
BbsI GAAGAC 1 cut(s) 1301
Bbv12I GWGCWC 1 cut(s) 209
BbvCI CCTCAGC 1 cut(s) 720
BccI CCATC 5 cut(s) 253, 545, 608, 995, 1602
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 1244
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 3 cut(s) 299, 582, 714
BcoDI GTCTC 4 cut(s) 11, 28, 243, 402
BfaI CTAG 2 cut(s) 543, 987
BfmI CTRYAG 4 cut(s) 886, 1214, 1395, 1472
BfuI GTATCC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 181
BlpI GCTNAGC 1 cut(s) 1617
Bme1390I CCNGG 4 cut(s) 299, 582, 714, 1244
Bme18I GGWCC 3 cut(s) 325, 465, 1372
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 5 cut(s) 325, 426, 465, 583, 1372
BmiI GGNNCC 3 cut(s) 303, 327, 742
BmrFI CCNGG 4 cut(s) 299, 582, 714, 1244
BmsI GCATC 3 cut(s) 1164, 1333, 1485
BmtI GCTAGC 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 1301
BpmI CTGGAG 1 cut(s) 1386
Bpu10I CCTNAGC 2 cut(s) 208, 720
Bpu1102I GCTNAGC 1 cut(s) 1617
BpuMI CCSGG 3 cut(s) 299, 582, 714
BsaI GGTCTC 2 cut(s) 28, 402
BsaJI CCNNGG 6 cut(s) 306, 348, 446, 1161, 1242, 1317
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 1449, 1479
Bsc4I CCNNNNNNNGG 5 cut(s) 297, 334, 435, 452, 1167
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 1369
Bse3DI GCAATG 1 cut(s) 1615
BseBI CCWGG 1 cut(s) 1244
BseDI CCNNGG 6 cut(s) 306, 348, 446, 1161, 1242, 1317
BseGI GGATG 3 cut(s) 346, 619, 664
BseLI CCNNNNNNNGG 5 cut(s) 297, 334, 435, 452, 1167
BseMI GCAATG 1 cut(s) 1615
BseMII CTCAG 7 cut(s) 209, 222, 254, 398, 711, 1023, 1212
BseNI ACTGG 1 cut(s) 1369
BsePI GCGCGC 1 cut(s) 869
BseRI GAGGAG 3 cut(s) 368, 463, 1422
BseYI CCCAGC 2 cut(s) 958, 1437
Bsh1236I CGCG 1 cut(s) 871
BshFI GGCC 4 cut(s) 175, 428, 585, 1358
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 5 cut(s) 298, 401, 429, 581, 713
BslFI GGGAC 3 cut(s) 468, 1277, 1420
BslI CCNNNNNNNGG 5 cut(s) 297, 334, 435, 452, 1167
BsmAI GTCTC 4 cut(s) 11, 28, 243, 402
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 3 cut(s) 468, 1277, 1420
BsnI GGCC 4 cut(s) 175, 428, 585, 1358
Bso31I GGTCTC 2 cut(s) 28, 402
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 113, 209, 306
Bsp143I GATC 2 cut(s) 602, 1108
Bsp1720I GCTNAGC 1 cut(s) 1617
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 8 cut(s) 338, 515, 645, 956, 1168, 1429, 1508, 1523
BspANI GGCC 4 cut(s) 175, 428, 585, 1358
BspCNI CTCAG 7 cut(s) 208, 221, 253, 397, 712, 1022, 1213
BspFNI CGCG 1 cut(s) 871
BspLI GGNNCC 3 cut(s) 303, 327, 742
BspMAI CTGCAG 2 cut(s) 1218, 1399
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 2 cut(s) 610, 1103
BspTNI GGTCTC 2 cut(s) 28, 402
BsrBI CCGCTC 1 cut(s) 1168
BsrDI GCAATG 1 cut(s) 1615
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 1 cut(s) 1369
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 6 cut(s) 306, 348, 446, 1161, 1242, 1317
BssHII GCGCGC 1 cut(s) 869
BssMI GATC 2 cut(s) 602, 1108
BssT1I CCWWGG 3 cut(s) 348, 1161, 1317
Bst2UI CCWGG 1 cut(s) 1244
Bst4CI ACNGT 4 cut(s) 473, 877, 887, 1142
Bst6I CTCTTC 2 cut(s) 824, 839
BstAPI GCANNNNNTGC 1 cut(s) 1213
BstC8I GCNNGC 4 cut(s) 430, 544, 587, 871
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 3 cut(s) 346, 619, 664
BstFNI CGCG 1 cut(s) 871
BstHHI GCGC 4 cut(s) 537, 871, 873, 1333
BstKTI GATC 2 cut(s) 605, 1111
BstMAI GTCTC 4 cut(s) 11, 28, 243, 402
BstMBI GATC 2 cut(s) 602, 1108
BstNI CCWGG 1 cut(s) 1244
BstNSI RCATGY 1 cut(s) 1435
BstSCI CCNGG 4 cut(s) 297, 580, 712, 1242
BstSFI CTRYAG 4 cut(s) 886, 1214, 1395, 1472
BstUI CGCG 1 cut(s) 871
BstV2I GAAGAC 1 cut(s) 1301
BstX2I RGATCY 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 1108
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 4 cut(s) 175, 428, 585, 1358
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 3 cut(s) 346, 619, 664
BtsIMutI CAGTG 2 cut(s) 478, 883
Cac8I GCNNGC 4 cut(s) 430, 544, 587, 871
CfoI GCGC 4 cut(s) 537, 871, 873, 1333
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 5 cut(s) 325, 426, 465, 583, 1372
Csp6I GTAC 1 cut(s) 295
CviQI GTAC 1 cut(s) 295
DpnI GATC 2 cut(s) 604, 1110
DpnII GATC 2 cut(s) 602, 1108
DraI TTTAAA 1 cut(s) 1350
DraIII CACNNNGTG 2 cut(s) 989, 1204
Eam1104I CTCTTC 2 cut(s) 824, 839
EarI CTCTTC 2 cut(s) 824, 839
EciI GGCGGA 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 207
Eco130I CCWWGG 3 cut(s) 348, 1161, 1317
Eco147I AGGCCT 2 cut(s) 175, 1358
Eco24I GRGCYC 3 cut(s) 113, 209, 306
Eco31I GGTCTC 2 cut(s) 28, 402
Eco47I GGWCC 3 cut(s) 325, 465, 1372
Eco53kI GAGCTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 965
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 207
EcoRI GAATTC 2 cut(s) 124, 331
EcoRII CCWGG 1 cut(s) 1242
EcoT14I CCWWGG 3 cut(s) 348, 1161, 1317
EcoT38I GRGCYC 3 cut(s) 113, 209, 306
ErhI CCWWGG 3 cut(s) 348, 1161, 1317
Esp3I CGTCTC 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 1404, 1436
FaqI GGGAC 3 cut(s) 468, 1277, 1420
FauI CCCGC 1 cut(s) 638
FokI GGATG 3 cut(s) 353, 626, 671
FriOI GRGCYC 3 cut(s) 113, 209, 306
FspBI CTAG 2 cut(s) 543, 987
GlaI GCGC 4 cut(s) 536, 870, 872, 1332
GsaI CCCAGC 2 cut(s) 962, 1441
GsuI CTGGAG 1 cut(s) 1386
HaeIII GGCC 4 cut(s) 175, 428, 585, 1358
HapII CCGG 5 cut(s) 298, 401, 429, 581, 713
HhaI GCGC 4 cut(s) 537, 871, 873, 1333
Hin6I GCGC 4 cut(s) 535, 869, 871, 1331
HinP1I GCGC 4 cut(s) 535, 869, 871, 1331
HindIII AAGCTT 1 cut(s) 1085
HinfI GANTC 7 cut(s) 280, 356, 489, 502, 523, 1265, 1625
HpaII CCGG 5 cut(s) 298, 401, 429, 581, 713
HphI GGTGA 9 cut(s) 376, 415, 604, 629, 770, 853, 872, 975, 1052
Hpy166II GTNNAC 2 cut(s) 86, 367
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 2 cut(s) 86, 367
Hpy99I CGWCG 3 cut(s) 17, 437, 514
HpyAV CCTTC 6 cut(s) 159, 186, 550, 830, 1406, 1599
HpyCH4III ACNGT 4 cut(s) 473, 877, 887, 1142
HpyCH4IV ACGT 1 cut(s) 1117
HpyCH4V TGCA 9 cut(s) 1052, 1121, 1207, 1216, 1258, 1397, 1498, 1561, 1633
HpySE526I ACGT 1 cut(s) 1117
HspAI GCGC 4 cut(s) 535, 869, 871, 1331
KroI GCCGGC 1 cut(s) 428
KroNI GCCGGC 1 cut(s) 430
Kzo9I GATC 2 cut(s) 602, 1108
LmnI GCTCC 6 cut(s) 301, 746, 891, 1165, 1321, 1470
LweI GCATC 3 cut(s) 1164, 1333, 1485
MaeI CTAG 2 cut(s) 543, 987
MaeII ACGT 1 cut(s) 1117
MaeIII GTNAC 4 cut(s) 403, 908, 981, 1246
MalI GATC 2 cut(s) 604, 1110
MbiI CCGCTC 1 cut(s) 1168
MboI GATC 2 cut(s) 602, 1108
MboII GAAGA 6 cut(s) 306, 841, 856, 947, 1183, 1301
MfeI CAATTG 1 cut(s) 1053
MflI RGATCY 1 cut(s) 1108
MhlI GDGCHC 3 cut(s) 113, 209, 306
MlyI GAGTC 4 cut(s) 289, 365, 1259, 1634
MmeI TCCRAC 3 cut(s) 492, 904, 1492
MroNI GCCGGC 1 cut(s) 428
MseI TTAA 3 cut(s) 1338, 1349, 1452
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 3 cut(s) 589, 958, 1151
MspI CCGG 5 cut(s) 298, 401, 429, 581, 713
MspR9I CCNGG 4 cut(s) 299, 582, 714, 1244
MunI CAATTG 1 cut(s) 1053
MvaI CCWGG 1 cut(s) 1244
MvnI CGCG 1 cut(s) 871
NaeI GCCGGC 1 cut(s) 430
NciI CCSGG 3 cut(s) 299, 582, 714
NcoI CCATGG 1 cut(s) 348
NdeII GATC 2 cut(s) 602, 1108
NgoMIV GCCGGC 1 cut(s) 428
NheI GCTAGC 1 cut(s) 542
NlaIV GGNNCC 3 cut(s) 303, 327, 742
NmeAIII GCCGAG 3 cut(s) 132, 287, 473
NmuCI GTSAC 2 cut(s) 403, 981
NspI RCATGY 1 cut(s) 1435
PauI GCGCGC 1 cut(s) 869
PceI AGGCCT 2 cut(s) 175, 1358
PcsI WCGNNNNNNNCGW 2 cut(s) 110, 572
PdiI GCCGGC 1 cut(s) 430
PfeI GAWTC 3 cut(s) 489, 502, 523
PleI GAGTC 4 cut(s) 288, 364, 1259, 1633
PpsI GAGTC 4 cut(s) 288, 364, 1259, 1633
PshBI ATTAAT 1 cut(s) 1452
Psp124BI GAGCTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 1242
PspFI CCCAGC 2 cut(s) 958, 1437
PspGI CCWGG 1 cut(s) 1242
PspN4I GGNNCC 3 cut(s) 303, 327, 742
PspPI GGNCC 5 cut(s) 325, 426, 465, 583, 1372
PstI CTGCAG 2 cut(s) 1218, 1399
PsuI RGATCY 1 cut(s) 1108
PteI GCGCGC 1 cut(s) 869
PvuII CAGCTG 2 cut(s) 589, 1151
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 378
SacI GAGCTC 1 cut(s) 209
SaqAI TTAA 3 cut(s) 1338, 1349, 1452
Sau3AI GATC 2 cut(s) 602, 1108
Sau96I GGNCC 5 cut(s) 325, 426, 465, 583, 1372
SchI GAGTC 4 cut(s) 289, 365, 1259, 1634
ScrFI CCNGG 4 cut(s) 299, 582, 714, 1244
SduI GDGCHC 3 cut(s) 113, 209, 306
SfaNI GCATC 3 cut(s) 1164, 1333, 1485
SfcI CTRYAG 4 cut(s) 886, 1214, 1395, 1472
SinI GGWCC 3 cut(s) 325, 465, 1372
SmiMI CAYNNNNRTG 1 cut(s) 378
SseBI AGGCCT 2 cut(s) 175, 1358
SsiI CCGC 8 cut(s) 338, 515, 645, 956, 1168, 1429, 1508, 1523
SspMI CTAG 2 cut(s) 543, 987
SstI GAGCTC 1 cut(s) 209
StuI AGGCCT 2 cut(s) 175, 1358
StyD4I CCNGG 4 cut(s) 297, 580, 712, 1242
StyI CCWWGG 3 cut(s) 348, 1161, 1317
TaaI ACNGT 4 cut(s) 473, 877, 887, 1142
TaiI ACGT 1 cut(s) 1120
TaqI TCGA 1 cut(s) 930
TaqII GACCGA 1 cut(s) 384
TauI GCSGC 3 cut(s) 517, 1510, 1525
TfiI GAWTC 3 cut(s) 489, 502, 523
Tru1I TTAA 3 cut(s) 1338, 1349, 1452
Tru9I TTAA 3 cut(s) 1338, 1349, 1452
TscAI CASTG 2 cut(s) 478, 890
TseFI GTSAC 2 cut(s) 403, 981
Tsp45I GTSAC 2 cut(s) 403, 981
TspDTI ATGAA 4 cut(s) 168, 695, 719, 948
TspRI CASTG 2 cut(s) 478, 890
VpaK11BI GGWCC 3 cut(s) 325, 465, 1372
VspI ATTAAT 1 cut(s) 1452
XapI RAATTY 7 cut(s) 124, 199, 331, 682, 925, 1301, 1386
XceI RCATGY 1 cut(s) 1435
XcmI CCANNNNNNNNNTGG 1 cut(s) 1601
XspI CTAG 2 cut(s) 543, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.