Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451713.1

Orthogroup ID

OG0001797

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1159

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451713.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1151 bp

atggagggcagtgacgagacgggcagggttgcgagaccacatcatcatttagacattcccaatttcagttcaggtcagataggtttacccatgaggcagttatcgccgagcccgagttcggagaattccaaaagacttggtatccctccttcccaccctaacaaccccatgaggcctcaattgccttcatggcaaatgggttctcagaatttgagctcaggaggttcggctcattcaaggtctttgtctcagccatcttttttctcacttgatagtctgcctcctttgagtcctttgacctcgtaccgggagccctcggcttcttcgctttcggacccgaattcggtggatgtttccatggaggagtctgtggtgaactctcatgctcagtcgcttcgctcgccggtgactgacagcaatcctttttgggccggcgacgggcttcctccgaggaggggacacaggaggtccaacagtgatgtgccgttgggattctcggctgtgattcagtcgtcgccgcagttgattccgattgggcgcagggctagctttgatgggaaggagaaggagagtttggggattgcgaagccgggccagctggtgaggcaaggatcaaatggggatgggagcaacaatggcgaagtaatgggggatagaaaatcgggcgcggaggttgtggatgatttgtttagtgcttatatgaatttagagaacattgataaaatgaacgaggataaggatttggatagtagggcaagtggctccaagacaaatgggggtgagagtagtgataatgaggtggagagtggcctaaatgggaagtggtcgtcgggttctggtttttcgaatgagaagagggaaggggtgaagaggactgctggtggtgatgttgcgcgcaccgtccgacactgtaggagtgtttcaatggatagttacatggacaatttgaatttcgatgaagaactgctgaagcctctaccgctgggaagtcaagtgggtcagcagtcacctagtgcttcggtagatgggagctcagcaaagttcagcatggagtttggaagtggtgagttcaatgcaattgagctgaaaaagattatggaaagtgaaaagctttcggagatagctgtatcagatcctaaacgtgcaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

383

Amino Acids

41.04

Weight (kDa)

5.59

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21230 AT2G21230 AT2G21230 AT2G21230 AT4G38900 AT4G38900 AT4G38900
fragaria_vesca	FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g10670 FvH4_2g38831 FvH4_2g38831
malus_domestica	MD05G1054500.v1.1 MD08G1016000.v1.1 MD08G1016200.v1.1 MD15G1015000.v1.1 MD15G1015100.v1.1
prunus_persica	Prupe.1G369300_v2.0.a1 Prupe.1G369300_v2.0.a1
pyrus_communis	pycom08g01400 pycom08g01410 pycom15g01300
rosa_chinensis	RchiOBHm_Chr6g0268361 RchiOBHm_Chr6g0302431
rosa_laevigata	RLG00000011172 RLG00000013914
rosa_multiflora	Rmu_co8451713.1_g000001 Rmu_sc0011714.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165790 Rroxscaffold_7G00199840
rosa_rugosa	Rorug06G0040800 Rorug06G0314000 Rorug06G0314100 Rorug06G0314200 Rorug06G0314200
rosa_samantha	Rh6AG160900 Rh6AG427100 Rh6BG165300 Rh6BG475600 Rh6CG153200 Rh6CG439300 Rh6DG151000 Rh6DG426300
rosa_wichuraiana	Rw6G013910 Rw6G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	668, 895
AciI	CCGC	3 cut(s)	518, 668, 980
AclWI	GGATC	2 cut(s)	619, 1127
AcsI	RAATTY	5 cut(s)	124, 208, 340, 703, 949
AcuI	CTGAAG	1 cut(s)	989
AdeI	CACNNNGTG	1 cut(s)	1013
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	5 cut(s)	118, 306, 343, 438, 455
AgsI	TTSAA	4 cut(s)	237, 924, 949, 1072
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	7 cut(s)	216, 549, 598, 1032, 1084, 1111, 1124
AluI	AGCT	7 cut(s)	216, 549, 598, 1032, 1084, 1111, 1124
Alw21I	GWGCWC	2 cut(s)	218, 1034
Alw26I	GTCTC	3 cut(s)	11, 28, 252
AlwI	GGATC	2 cut(s)	619, 1127
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	4 cut(s)	173, 429, 592, 808
ApoI	RAATTY	5 cut(s)	124, 208, 340, 703, 949
AspLEI	GCGC	4 cut(s)	540, 668, 895, 897
AspS9I	GGNCC	4 cut(s)	334, 429, 468, 592
AsuC2I	CCSGG	2 cut(s)	308, 591
AsuHPI	GGTGA	8 cut(s)	385, 418, 613, 791, 877, 896, 999, 1076
AsuII	TTCGAA	1 cut(s)	845
AsuNHI	GCTAGC	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	334, 468
BanII	GRGCYC	4 cut(s)	113, 218, 315, 1034
BarI	GAAGNNNNNNTAC	2 cut(s)	133, 165
Bbv12I	GWGCWC	2 cut(s)	218, 1034
BccI	CCATC	4 cut(s)	262, 548, 617, 1019
BceAI	ACGGC	1 cut(s)	469
BciVI	GTATCC	1 cut(s)	152
BcnI	CCSGG	2 cut(s)	308, 591
BcoDI	GTCTC	3 cut(s)	11, 28, 252
BfaI	CTAG	2 cut(s)	546, 1011
BfmI	CTRYAG	1 cut(s)	910
BfuI	GTATCC	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	518
BlpI	GCTNAGC	1 cut(s)	1033
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	2 cut(s)	308, 591
Bme18I	GGWCC	2 cut(s)	334, 468
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	334, 429, 468, 592
BmiI	GGNNCC	3 cut(s)	312, 336, 763
BmrFI	CCNGG	2 cut(s)	308, 591
BmtI	GCTAGC	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	217
Bpu1102I	GCTNAGC	1 cut(s)	1033
Bpu14I	TTCGAA	1 cut(s)	845
BpuMI	CCSGG	2 cut(s)	308, 591
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	315, 357, 449
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 306, 343, 438, 455
Bse118I	RCCGGY	2 cut(s)	403, 431
BseDI	CCNNGG	3 cut(s)	315, 357, 449
BseGI	GGATG	3 cut(s)	355, 628, 685
BseLI	CCNNNNNNNGG	5 cut(s)	118, 306, 343, 438, 455
BseMII	CTCAG	5 cut(s)	218, 231, 263, 401, 1047
BsePI	GCGCGC	1 cut(s)	893
BseRI	GAGGAG	2 cut(s)	377, 466
BseYI	CCCAGC	1 cut(s)	982
Bsh1236I	CGCG	2 cut(s)	668, 895
BshFI	GGCC	4 cut(s)	175, 431, 594, 810
BsiHKAI	GWGCWC	2 cut(s)	218, 1034
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	4 cut(s)	307, 404, 432, 590
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	5 cut(s)	118, 306, 343, 438, 455
BsmAI	GTCTC	3 cut(s)	11, 28, 252
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	4 cut(s)	175, 431, 594, 810
Bso31I	GGTCTC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	4 cut(s)	113, 218, 315, 1034
Bsp143I	GATC	2 cut(s)	611, 1132
Bsp1720I	GCTNAGC	1 cut(s)	1033
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	3 cut(s)	518, 668, 980
BspANI	GGCC	4 cut(s)	175, 431, 594, 810
BspCNI	CTCAG	5 cut(s)	217, 230, 262, 400, 1046
BspFNI	CGCG	2 cut(s)	668, 895
BspLI	GGNNCC	3 cut(s)	312, 336, 763
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	2 cut(s)	619, 1127
BspT104I	TTCGAA	1 cut(s)	845
BspTNI	GGTCTC	1 cut(s)	28
BsrFI	RCCGGY	2 cut(s)	403, 431
BssAI	RCCGGY	2 cut(s)	403, 431
BssECI	CCNNGG	3 cut(s)	315, 357, 449
BssHII	GCGCGC	1 cut(s)	893
BssMI	GATC	2 cut(s)	611, 1132
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	476, 901, 911
Bst6I	CTCTTC	2 cut(s)	848, 863
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	5 cut(s)	401, 433, 547, 596, 895
BstDEI	CTNAG	5 cut(s)	204, 217, 249, 387, 1033
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	355, 628, 685
BstFNI	CGCG	2 cut(s)	668, 895
BstHHI	GCGC	4 cut(s)	540, 668, 895, 897
BstKTI	GATC	2 cut(s)	614, 1135
BstMAI	GTCTC	3 cut(s)	11, 28, 252
BstMBI	GATC	2 cut(s)	611, 1132
BstMWI	GCNNNNNNNGC	9 cut(s)	103, 181, 190, 400, 546, 595, 604, 636, 979
BstSCI	CCNGG	2 cut(s)	306, 589
BstSFI	CTRYAG	1 cut(s)	910
BstUI	CGCG	2 cut(s)	668, 895
BstX2I	RGATCY	1 cut(s)	1132
BstYI	RGATCY	1 cut(s)	1132
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	4 cut(s)	175, 431, 594, 810
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	355, 628, 685
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	3 cut(s)	16, 481, 907
Cac8I	GCNNGC	5 cut(s)	401, 433, 547, 596, 895
CfoI	GCGC	4 cut(s)	540, 668, 895, 897
Cfr10I	RCCGGY	2 cut(s)	403, 431
Cfr13I	GGNCC	4 cut(s)	334, 429, 468, 592
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	7 cut(s)	91, 169, 189, 358, 383, 937, 1048
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	5 cut(s)	204, 217, 249, 387, 1033
DpnI	GATC	2 cut(s)	613, 1134
DpnII	GATC	2 cut(s)	611, 1132
DraIII	CACNNNGTG	1 cut(s)	1013
Eam1104I	CTCTTC	2 cut(s)	848, 863
EarI	CTCTTC	2 cut(s)	848, 863
Ecl136II	GAGCTC	2 cut(s)	216, 1032
Eco130I	CCWWGG	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	175
Eco24I	GRGCYC	4 cut(s)	113, 218, 315, 1034
Eco31I	GGTCTC	1 cut(s)	28
Eco47I	GGWCC	2 cut(s)	334, 468
Eco53kI	GAGCTC	2 cut(s)	216, 1032
Eco57I	CTGAAG	1 cut(s)	989
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	2 cut(s)	216, 1032
EcoRI	GAATTC	2 cut(s)	124, 340
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	4 cut(s)	113, 218, 315, 1034
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	7 cut(s)	94, 172, 192, 361, 386, 940, 1051
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	7 cut(s)	90, 168, 188, 357, 382, 936, 1047
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	3 cut(s)	362, 635, 692
FriOI	GRGCYC	4 cut(s)	113, 218, 315, 1034
Fsp4HI	GCNGC	1 cut(s)	518
FspBI	CTAG	2 cut(s)	546, 1011
GlaI	GCGC	4 cut(s)	539, 667, 894, 896
GluI	GCNGC	1 cut(s)	518
GsaI	CCCAGC	1 cut(s)	986
HaeIII	GGCC	4 cut(s)	175, 431, 594, 810
HapII	CCGG	4 cut(s)	307, 404, 432, 590
HhaI	GCGC	4 cut(s)	540, 668, 895, 897
Hin1II	CATG	7 cut(s)	94, 172, 192, 361, 386, 940, 1051
Hin6I	GCGC	4 cut(s)	538, 666, 893, 895
HinP1I	GCGC	4 cut(s)	538, 666, 893, 895
HindIII	AAGCTT	1 cut(s)	1109
HinfI	GANTC	5 cut(s)	289, 365, 492, 505, 526
HpaII	CCGG	4 cut(s)	307, 404, 432, 590
HphI	GGTGA	8 cut(s)	385, 418, 613, 791, 877, 896, 999, 1076
Hpy166II	GTNNAC	2 cut(s)	86, 376
Hpy188I	TCNGA	9 cut(s)	78, 121, 207, 334, 450, 531, 905, 1117, 1132
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	2 cut(s)	86, 376
Hpy99I	CGWCG	3 cut(s)	440, 517, 832
HpyAV	CCTTC	5 cut(s)	159, 195, 553, 559, 854
HpyCH4III	ACNGT	3 cut(s)	476, 901, 911
HpyCH4IV	ACGT	1 cut(s)	1141
HpyCH4V	TGCA	2 cut(s)	1076, 1145
HpyF10VI	GCNNNNNNNGC	9 cut(s)	103, 181, 190, 400, 546, 595, 604, 636, 979
HpyF3I	CTNAG	5 cut(s)	204, 217, 249, 387, 1033
HpySE526I	ACGT	1 cut(s)	1141
Hsp92II	CATG	7 cut(s)	94, 172, 192, 361, 386, 940, 1051
HspAI	GCGC	4 cut(s)	538, 666, 893, 895
KroI	GCCGGC	1 cut(s)	431
KroNI	GCCGGC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	611, 1132
LmnI	GCTCC	4 cut(s)	310, 627, 767, 1029
MaeI	CTAG	2 cut(s)	546, 1011
MaeII	ACGT	1 cut(s)	1141
MaeIII	GTNAC	4 cut(s)	11, 406, 932, 1005
MalI	GATC	2 cut(s)	613, 1134
MboI	GATC	2 cut(s)	611, 1132
MboII	GAAGA	4 cut(s)	315, 865, 880, 971
MfeI	CAATTG	2 cut(s)	179, 1077
MflI	RGATCY	1 cut(s)	1132
MhlI	GDGCHC	4 cut(s)	113, 218, 315, 1034
MluCI	AATT	9 cut(s)	61, 124, 179, 208, 340, 703, 943, 949, 1077
MlyI	GAGTC	2 cut(s)	298, 374
MmeI	TCCRAC	2 cut(s)	495, 928
MroNI	GCCGGC	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	598, 982
MspI	CCGG	4 cut(s)	307, 404, 432, 590
MspR9I	CCNGG	2 cut(s)	308, 591
MunI	CAATTG	2 cut(s)	179, 1077
MvnI	CGCG	2 cut(s)	668, 895
MwoI	GCNNNNNNNGC	9 cut(s)	103, 181, 190, 400, 546, 595, 604, 636, 979
NaeI	GCCGGC	1 cut(s)	433
NciI	CCSGG	2 cut(s)	308, 591
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	2 cut(s)	611, 1132
NgoMIV	GCCGGC	1 cut(s)	431
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	7 cut(s)	94, 172, 192, 361, 386, 940, 1051
NlaIV	GGNNCC	3 cut(s)	312, 336, 763
NmeAIII	GCCGAG	3 cut(s)	132, 296, 476
NmuCI	GTSAC	3 cut(s)	11, 406, 1005
NspV	TTCGAA	1 cut(s)	845
PauI	GCGCGC	1 cut(s)	893
PceI	AGGCCT	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PdiI	GCCGGC	1 cut(s)	433
PfeI	GAWTC	3 cut(s)	492, 505, 526
PkrI	GCNGC	1 cut(s)	519
PleI	GAGTC	2 cut(s)	297, 373
PpsI	GAGTC	2 cut(s)	297, 373
Psp124BI	GAGCTC	2 cut(s)	218, 1034
PspFI	CCCAGC	1 cut(s)	982
PspN4I	GGNNCC	3 cut(s)	312, 336, 763
PspPI	GGNCC	4 cut(s)	334, 429, 468, 592
PsuI	RGATCY	1 cut(s)	1132
PteI	GCGCGC	1 cut(s)	893
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SacI	GAGCTC	2 cut(s)	218, 1034
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	2 cut(s)	611, 1132
Sau96I	GGNCC	4 cut(s)	334, 429, 468, 592
SchI	GAGTC	2 cut(s)	298, 374
ScrFI	CCNGG	2 cut(s)	308, 591
SduI	GDGCHC	4 cut(s)	113, 218, 315, 1034
SfcI	CTRYAG	1 cut(s)	910
SfuI	TTCGAA	1 cut(s)	845
SgrAI	CRCCGGYG	1 cut(s)	403
SinI	GGWCC	2 cut(s)	334, 468
Sse9I	AATT	9 cut(s)	61, 124, 179, 208, 340, 703, 943, 949, 1077
SseBI	AGGCCT	1 cut(s)	175
SsiI	CCGC	3 cut(s)	518, 668, 980
SspMI	CTAG	2 cut(s)	546, 1011
SstI	GAGCTC	2 cut(s)	218, 1034
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	306, 589
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	476, 901, 911
TaiI	ACGT	1 cut(s)	1144
TaqI	TCGA	2 cut(s)	845, 954
TasI	AATT	9 cut(s)	61, 124, 179, 208, 340, 703, 943, 949, 1077
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	3 cut(s)	492, 505, 526
TscAI	CASTG	3 cut(s)	16, 481, 914
TseFI	GTSAC	3 cut(s)	11, 406, 1005
Tsp45I	GTSAC	3 cut(s)	11, 406, 1005
TspDTI	ATGAA	4 cut(s)	177, 716, 740, 972
TspRI	CASTG	3 cut(s)	16, 481, 914
VpaK11BI	GGWCC	2 cut(s)	334, 468
XapI	RAATTY	5 cut(s)	124, 208, 340, 703, 949
XspI	CTAG	2 cut(s)	546, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.