AT4G39530

Pentatricopeptide repeat domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007239
Physical Location & Seq
Reverse (-)
18374368 .. 18377309
2942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39530.1

Sequence Viewer

Length: 2505 bp
ATGAGAAGCTATCGCTGTTGGCGTAAAGTCCAAGAAACCATACGTTTATACTCCTCTTCATCTTCTTCTGCTTCAAGTCTTTTGGAATTTGTAAACGCAGATTTTCCTTCTACGATAGGAATCCGAGGAAGGCGCGAATTTGCTCGTCTCTTGCAGCTGCGTGCGTCAGATGATCTGTTGCATTATCAAAATGTAGTTCATGGTCAGATTATTGTTTGGGGCCTCGAGTTAGATACGTATCTTAGCAACATTTTGATCAATTTGTATTCGAGAGCTGGTGGTATGGTTTATGCACGTAAGGTGTTCGAGAAAATGCCTGAGAGAAACTTAGTTTCTTGGTCTACCATGGTTTCAGCTTGCAACCATCATGGGATTTATGAGGAATCTTTGGTGGTTTTCTTAGAGTTCTGGAGAACTAGAAAAGACAGTCCGAATGAATATATTTTGTCGAGTTTTATTCAAGCTTGCTCAGGCTTAGATGGTCGTGGGCGTTGGATGGTGTTTCAACTACAAAGTTTTCTTGTCAAGAGTGGGTTTGATAGGGATGTTTATGTTGGTACCTTGTTGATTGATTTTTATTTGAAGGATGGTAATATCGATTATGCGAGGCTTGTGTTTGATGCTTTACCAGAGAAATCTACTGTGACTTGGACGACCATGATCAGTGGGTGTGTAAAAATGGGAAGAAGCTACGTTTCATTACAGCTGTTCTACCAACTAATGGAAGACAATGTTGTTCCAGATGGCTACATCCTTTCGACGGTTCTAAGTGCATGTTCAATACTTCCGTTTCTTGAAGGTGGGAAGCAGATTCATGCGCACATCTTAAGATATGGACTTGAGATGGATGCCTCACTGATGAATGTGCTTATAGATTCTTATGTGAAGTGTGGCAGAGTTATAGCGGCTCATAAGCTATTCAATGGAATGCCGAATAAAAACATCATTTCGTGGACCACTTTGCTCTCTGGTTATAAGCAGAACGCTCTTCATAAAGAAGCCATGGAATTGTTTACCAGTATGTCAAAGTTTGGTTTAAAGCCGGATATGTATGCTTGCTCTAGCATACTCACATCTTGTGCCTCACTTCATGCTTTGGGATTTGGAACACAAGTTCATGCTTACACTATCAAAGCCAATCTTGGCAATGATAGCTATGTGACTAACAGCTTGATTGACATGTATGCGAAATGTGACTGTTTGACCGATGCCAGAAAAGTTTTTGATATTTTCGCTGCTGCTGATGTGGTTTTATTCAATGCAATGATTGAAGGTTACTCGAGACTTGGGACACAATGGGAACTACATGAAGCATTGAACATCTTTCGTGACATGAGGTTCAGATTGATTCGACCTAGCCTATTGACTTTTGTTAGCCTTCTACGTGCATCTGCTTCTTTAACAAGCTTGGGACTGAGTAAACAAATCCATGGATTGATGTTCAAATATGGGTTAAACTTAGATATATTTGCTGGAAGCGCTTTGATTGATGTTTACTCAAATTGCTACTGCCTCAAGGATTCCAGGCTTGTGTTTGATGAAATGAAAGTGAAAGATCTTGTTATCTGGAATTCTATGTTTGCAGGTTATGTTCAACAATCAGAGAACGAAGAAGCTCTCAACCTGTTTCTGGAATTACAGTTATCAAGAGAAAGACCTGACGAATTCACGTTTGCCAACATGGTTACAGCAGCTGGCAACCTAGCAAGTGTTCAATTGGGTCAAGAGTTCCATTGCCAGCTTCTGAAAAGAGGCTTGGAATGTAATCCGTATATTACAAATGCTCTACTAGATATGTACGCCAAATGTGGTAGTCCCGAAGACGCTCATAAGGCTTTTGATTCAGCAGCTTCAAGAGATGTAGTTTGTTGGAATTCTGTCATCTCATCTTATGCGAATCATGGAGAAGGCAAAAAGGCTCTTCAGATGCTTGAAAAAATGATGAGTGAGGGAATAGAGCCTAACTACATCACCTTTGTTGGAGTTCTATCAGCGTGTAGCCATGCTGGTCTTGTAGAAGATGGACTTAAGCAATTTGAGTTAATGCTTCGATTTGGAATTGAACCTGAAACTGAGCACTATGTTTGTATGGTATCTCTTTTAGGCCGTGCTGGTAGATTGAACAAAGCAAGGGAGTTAATTGAGAAAATGCCGACAAAACCAGCTGCTATAGTATGGAGGAGCTTGCTGAGTGGATGCGCAAAGGCCGGTAACGTCGAGTTAGCTGAACATGCTGCTGAAATGGCTATTTTGTCTGATCCCAAGGACAGTGGATCGTTTACTATGCTTTCTAATATTTACGCGTCCAAGGGTATGTGGACTGAAGCTAAGAAGGTGAGAGAAAGAATGAAGGTTGAAGGTGTGGTGAAAGAACCTGGACGTAGTTGGATTGGGATTAATAAGGAGGTTCATATATTTTTGTCTAAGGATAAATCTCACTGCAAGGCTAATCAAATTTATGAAGTGTTAGACGACTTACTTGTGCAGATCAGAGGAGTTAGTTAA

Protein Analysis

834

Amino Acids

93.79

Weight (kDa)

6.85

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 313 - 361 2.4e-09 PPR repeat family
PPR_2 PF13041 415 - 463 1.3e-06 PPR repeat family
PPR_2 PF13041 519 - 564 1.5e-06 PPR repeat family
PPR_2 PF13041 619 - 667 2.4e-11 PPR repeat family
PPR_3 PF13812 620 - 666 1.9e-06 Pentatricopeptide repeat domain
PPR PF01535 622 - 652 4.7e-07 PPR repeat
E_motif PF20431 738 - 797 3e-17 E motif
Eplus_motif PF20430 803 - 827 4.6e-06 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 975
Acc16I TGCGCA 2 cut(s) 819, 2200
Acc36I ACCTGC 1 cut(s) 1574
Acc65I GGTACC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 721
AccI GTMKAC 1 cut(s) 341
AccII CGCG 2 cut(s) 135, 2303
AciI CCGC 1 cut(s) 905
AclWI GGATC 2 cut(s) 2252, 2281
AcsI RAATTY 6 cut(s) 86, 137, 1570, 1664, 1873, 2454
AcuI CTGAAG 2 cut(s) 1907, 2343
AfaI GTAC 2 cut(s) 559, 1799
AfeI AGCGCT 1 cut(s) 1480
AfiI CCNNNNNNNGG 3 cut(s) 721, 760, 1630
AflII CTTAAG 2 cut(s) 826, 2027
AflIII ACRYGT 2 cut(s) 1179, 2301
AjnI CCWGG 2 cut(s) 1523, 2374
AjuI GAANNNNNNNTTGG 2 cut(s) 1739, 1771
AloI GAACNNNNNNTCC 2 cut(s) 1098, 1130
Alw21I GWGCWC 1 cut(s) 2079
Alw26I GTCTC 2 cut(s) 152, 1276
AlwI GGATC 2 cut(s) 2252, 2281
AlwNI CAGNNNCTG 2 cut(s) 1694, 1744
Ama87I CYCGRG 2 cut(s) 224, 1279
Aor51HI AGCGCT 1 cut(s) 1480
AoxI GGCC 3 cut(s) 220, 2104, 2205
ApeKI GCWGC 8 cut(s) 154, 157, 1235, 1238, 1691, 1847, 2165, 2234
ApoI RAATTY 6 cut(s) 86, 137, 1570, 1664, 1873, 2454
AseI ATTAAT 1 cut(s) 2397
Asp718I GGTACC 1 cut(s) 557
AspLEI GCGC 4 cut(s) 135, 820, 1481, 2201
AspS9I GGNCC 2 cut(s) 220, 954
AsuHPI GGTGA 3 cut(s) 1963, 2347, 2377
AvaI CYCGRG 2 cut(s) 224, 1279
AvaII GGWCC 1 cut(s) 954
BanI GGYRCC 1 cut(s) 557
BbsI GAAGAC 2 cut(s) 732, 1827
Bbv12I GWGCWC 1 cut(s) 2079
BbvI GCAGC 8 cut(s) 144, 166, 1222, 1225, 1703, 1859, 2152, 2221
BccI CCATC 7 cut(s) 372, 473, 490, 581, 737, 838, 2015
BceAI ACGGC 1 cut(s) 2091
BciT130I CCWGG 2 cut(s) 1525, 2376
BclI TGATCA 2 cut(s) 255, 660
BcoDI GTCTC 2 cut(s) 152, 1276
BfaI CTAG 5 cut(s) 417, 1062, 1356, 1703, 1790
BfmI CTRYAG 1 cut(s) 2169
BfoI RGCGCY 1 cut(s) 1482
BfrI CTTAAG 2 cut(s) 826, 2027
BfuAI ACCTGC 1 cut(s) 1574
BglII AGATCT 1 cut(s) 1555
BisI GCNGC 9 cut(s) 155, 158, 906, 1236, 1239, 1692, 1848, 2166, 2235
BlsI GCNGC 9 cut(s) 156, 159, 907, 1237, 1240, 1693, 1849, 2167, 2236
Bme1390I CCNGG 2 cut(s) 1525, 2376
Bme18I GGWCC 1 cut(s) 954
BmeT110I CYCGRG 2 cut(s) 224, 1279
BmgT120I GGNCC 2 cut(s) 220, 954
BmiI GGNNCC 2 cut(s) 221, 559
BmrFI CCNGG 2 cut(s) 1525, 2376
BmsI GCATC 6 cut(s) 610, 838, 1198, 1397, 1917, 2186
BpiI GAAGAC 2 cut(s) 732, 1827
BpmI CTGGAG 1 cut(s) 430
Bpu10I CCTNAGC 1 cut(s) 469
BpuEI CTTGAG 2 cut(s) 860, 1499
Bsa29I ATCGAT 1 cut(s) 597
BsaAI YACGTR 3 cut(s) 237, 296, 1385
BsaBI GATNNNNATC 2 cut(s) 119, 237
BsaJI CCNNGG 6 cut(s) 124, 345, 1002, 1429, 2262, 2307
Bsc4I CCNNNNNNNGG 3 cut(s) 721, 760, 1630
Bse118I RCCGGY 1 cut(s) 2207
Bse1I ACTGG 1 cut(s) 1017
Bse3DI GCAATG 3 cut(s) 1153, 1269, 1732
Bse8I GATNNNNATC 2 cut(s) 119, 237
BseBI CCWGG 2 cut(s) 1525, 2376
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 6 cut(s) 124, 345, 1002, 1429, 2262, 2307
BseGI GGATG 6 cut(s) 501, 550, 592, 750, 853, 2201
BseJI GATNNNNATC 2 cut(s) 119, 237
BseLI CCNNNNNNNGG 3 cut(s) 721, 760, 1630
BseMI GCAATG 3 cut(s) 1153, 1269, 1732
BseMII CTCAG 5 cut(s) 309, 483, 1406, 2064, 2180
BseNI ACTGG 1 cut(s) 1017
BseRI GAGGAG 2 cut(s) 43, 2194
BseXI GCAGC 8 cut(s) 144, 166, 1222, 1225, 1703, 1859, 2152, 2221
BsgI GTGCAG 1 cut(s) 2504
Bsh1236I CGCG 2 cut(s) 135, 2303
BshFI GGCC 3 cut(s) 222, 2106, 2207
BshNI GGYRCC 1 cut(s) 557
BshVI ATCGAT 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 2079
BsiHKCI CYCGRG 2 cut(s) 224, 1279
BsiSI CCGG 2 cut(s) 1043, 2208
BslFI GGGAC 3 cut(s) 1303, 1425, 1800
BslI CCNNNNNNNGG 3 cut(s) 721, 760, 1630
BsmAI GTCTC 2 cut(s) 152, 1276
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 1303, 1425, 1800
BsmI GAATGC 1 cut(s) 933
BsnI GGCC 3 cut(s) 222, 2106, 2207
BsoBI CYCGRG 2 cut(s) 224, 1279
Bsp1286I GDGCHC 1 cut(s) 2079
Bsp143I GATC 7 cut(s) 172, 255, 660, 1555, 2257, 2273, 2487
Bsp19I CCATGG 3 cut(s) 345, 1002, 1429
BspACI CCGC 1 cut(s) 905
BspANI GGCC 3 cut(s) 222, 2106, 2207
BspCNI CTCAG 5 cut(s) 310, 482, 1407, 2065, 2181
BspDI ATCGAT 1 cut(s) 597
BspFNI CGCG 2 cut(s) 135, 2303
BspLI GGNNCC 2 cut(s) 221, 559
BspMI ACCTGC 1 cut(s) 1574
BspPI GGATC 2 cut(s) 2252, 2281
BspQI GCTCTTC 2 cut(s) 993, 1926
BspT107I GGYRCC 1 cut(s) 557
BspTI CTTAAG 2 cut(s) 826, 2027
BsrDI GCAATG 3 cut(s) 1153, 1269, 1732
BsrFI RCCGGY 1 cut(s) 2207
BsrI ACTGG 1 cut(s) 1017
BssAI RCCGGY 1 cut(s) 2207
BssECI CCNNGG 6 cut(s) 124, 345, 1002, 1429, 2262, 2307
BssMI GATC 7 cut(s) 172, 255, 660, 1555, 2257, 2273, 2487
BssT1I CCWWGG 5 cut(s) 345, 1002, 1429, 2262, 2307
Bst2UI CCWGG 2 cut(s) 1525, 2376
Bst4CI ACNGT 6 cut(s) 428, 643, 763, 1199, 1641, 2270
Bst6I CTCTTC 3 cut(s) 61, 993, 1926
BstAFI CTTAAG 2 cut(s) 826, 2027
BstBAI YACGTR 3 cut(s) 237, 296, 1385
BstC8I GCNNGC 7 cut(s) 162, 358, 466, 1057, 1696, 1739, 2186
BstDSI CCRYGG 3 cut(s) 345, 1002, 1429
BstF5I GGATG 6 cut(s) 501, 550, 592, 750, 853, 2201
BstFNI CGCG 2 cut(s) 135, 2303
BstH2I RGCGCY 1 cut(s) 1482
BstHHI GCGC 4 cut(s) 135, 820, 1481, 2201
BstKTI GATC 7 cut(s) 175, 258, 663, 1558, 2260, 2276, 2490
BstMAI GTCTC 2 cut(s) 152, 1276
BstMBI GATC 7 cut(s) 172, 255, 660, 1555, 2257, 2273, 2487
BstMWI GCNNNNNNNGC 5 cut(s) 1152, 1478, 1832, 2231, 2243
BstNI CCWGG 2 cut(s) 1525, 2376
BstNSI RCATGY 3 cut(s) 777, 1183, 2234
BstSCI CCNGG 2 cut(s) 1523, 2374
BstSFI CTRYAG 1 cut(s) 2169
BstSNI TACGTA 1 cut(s) 237
BstUI CGCG 2 cut(s) 135, 2303
BstV1I GCAGC 8 cut(s) 144, 166, 1222, 1225, 1703, 1859, 2152, 2221
BstV2I GAAGAC 2 cut(s) 732, 1827
BstX2I RGATCY 1 cut(s) 1555
BstYI RGATCY 1 cut(s) 1555
Bsu15I ATCGAT 1 cut(s) 597
BsuRI GGCC 3 cut(s) 222, 2106, 2207
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 3 cut(s) 345, 1002, 1429
BtsCI GGATG 6 cut(s) 501, 550, 592, 750, 853, 2201
BtsI GCAGTG 1 cut(s) 2437
BtsIMutI CAGTG 4 cut(s) 670, 854, 2275, 2437
BveI ACCTGC 1 cut(s) 1574
Cac8I GCNNGC 7 cut(s) 162, 358, 466, 1057, 1696, 1739, 2186
CaiI CAGNNNCTG 2 cut(s) 1694, 1744
CfoI GCGC 4 cut(s) 135, 820, 1481, 2201
Cfr10I RCCGGY 1 cut(s) 2207
Cfr13I GGNCC 2 cut(s) 220, 954
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 3 cut(s) 153, 1832, 2292
Csp6I GTAC 2 cut(s) 558, 1798
CspCI CAANNNNNGTGG 2 cut(s) 2251, 2286
CviQI GTAC 2 cut(s) 558, 1798
DpnI GATC 7 cut(s) 174, 257, 662, 1557, 2259, 2275, 2489
DpnII GATC 7 cut(s) 172, 255, 660, 1555, 2257, 2273, 2487
DraI TTTAAA 1 cut(s) 1038
Eam1104I CTCTTC 3 cut(s) 61, 993, 1926
EarI CTCTTC 3 cut(s) 61, 993, 1926
Eco105I TACGTA 1 cut(s) 237
Eco130I CCWWGG 5 cut(s) 345, 1002, 1429, 2262, 2307
Eco47I GGWCC 1 cut(s) 954
Eco47III AGCGCT 1 cut(s) 1480
Eco57I CTGAAG 2 cut(s) 1907, 2343
Eco88I CYCGRG 2 cut(s) 224, 1279
EcoO109I RGGNCCY 1 cut(s) 220
EcoRI GAATTC 3 cut(s) 1570, 1664, 1873
EcoRII CCWGG 2 cut(s) 1523, 2374
EcoT14I CCWWGG 5 cut(s) 345, 1002, 1429, 2262, 2307
ErhI CCWWGG 5 cut(s) 345, 1002, 1429, 2262, 2307
Esp3I CGTCTC 1 cut(s) 152
FalI AAGNNNNNCTT 4 cut(s) 1125, 1157, 2010, 2042
FaqI GGGAC 3 cut(s) 1303, 1425, 1800
FbaI TGATCA 2 cut(s) 255, 660
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 9 cut(s) 155, 158, 906, 1236, 1239, 1692, 1848, 2166, 2235
FokI GGATG 6 cut(s) 508, 557, 599, 737, 860, 2208
Fsp4HI GCNGC 9 cut(s) 155, 158, 906, 1236, 1239, 1692, 1848, 2166, 2235
FspAI RTGCGCAY 1 cut(s) 819
FspBI CTAG 5 cut(s) 417, 1062, 1356, 1703, 1790
FspI TGCGCA 2 cut(s) 819, 2200
GlaI GCGC 4 cut(s) 134, 819, 1480, 2200
GluI GCNGC 9 cut(s) 155, 158, 906, 1236, 1239, 1692, 1848, 2166, 2235
GsuI CTGGAG 1 cut(s) 430
HaeII RGCGCY 1 cut(s) 1482
HaeIII GGCC 3 cut(s) 222, 2106, 2207
HapII CCGG 2 cut(s) 1043, 2208
HgaI GACGC 3 cut(s) 153, 1832, 2292
HhaI GCGC 4 cut(s) 135, 820, 1481, 2201
Hin6I GCGC 4 cut(s) 133, 818, 1479, 2199
HinP1I GCGC 4 cut(s) 133, 818, 1479, 2199
HindIII AAGCTT 2 cut(s) 462, 1405
HinfI GANTC 8 cut(s) 120, 383, 811, 875, 1348, 1520, 1841, 1897
HpaII CCGG 2 cut(s) 1043, 2208
HphI GGTGA 3 cut(s) 1963, 2347, 2377
Hpy166II GTNNAC 8 cut(s) 94, 342, 954, 1014, 1421, 1495, 2280, 2319
Hpy8I GTNNAC 8 cut(s) 94, 342, 954, 1014, 1421, 1495, 2280, 2319
Hpy99I CGWCG 2 cut(s) 763, 2219
HpyCH4III ACNGT 6 cut(s) 428, 643, 763, 1199, 1641, 2270
HpyCH4IV ACGT 8 cut(s) 43, 236, 295, 693, 1384, 1670, 2214, 2380
HpyF10VI GCNNNNNNNGC 5 cut(s) 1152, 1478, 1832, 2231, 2243
HpySE526I ACGT 8 cut(s) 43, 236, 295, 693, 1384, 1670, 2214, 2380
HspAI GCGC 4 cut(s) 133, 818, 1479, 2199
KpnI GGTACC 1 cut(s) 561
Ksp22I TGATCA 2 cut(s) 255, 660
Kzo9I GATC 7 cut(s) 172, 255, 660, 1555, 2257, 2273, 2487
LguI GCTCTTC 2 cut(s) 993, 1926
LmnI GCTCC 1 cut(s) 2181
Lsp1109I GCAGC 8 cut(s) 144, 166, 1222, 1225, 1703, 1859, 2152, 2221
LweI GCATC 6 cut(s) 610, 838, 1198, 1397, 1917, 2186
MaeI CTAG 5 cut(s) 417, 1062, 1356, 1703, 1790
MaeII ACGT 8 cut(s) 43, 236, 295, 693, 1384, 1670, 2214, 2380
MaeIII GTNAC 7 cut(s) 643, 1159, 1193, 1274, 1328, 1684, 2210
MalI GATC 7 cut(s) 174, 257, 662, 1557, 2259, 2275, 2489
MboI GATC 7 cut(s) 172, 255, 660, 1555, 2257, 2273, 2487
MfeI CAATTG 1 cut(s) 1715
MflI RGATCY 1 cut(s) 1555
MhlI GDGCHC 1 cut(s) 2079
MluI ACGCGT 1 cut(s) 2301
MmeI TCCRAC 4 cut(s) 473, 1850, 1960, 2366
MseI TTAA 9 cut(s) 827, 1037, 1400, 1454, 2028, 2042, 2138, 2397, 2503
MspA1I CMGCKG 4 cut(s) 157, 706, 1694, 2165
MspCI CTTAAG 2 cut(s) 826, 2027
MspI CCGG 2 cut(s) 1043, 2208
MspR9I CCNGG 2 cut(s) 1525, 2376
MunI CAATTG 1 cut(s) 1715
Mva1269I GAATGC 1 cut(s) 933
MvaI CCWGG 2 cut(s) 1525, 2376
MvnI CGCG 2 cut(s) 135, 2303
MwoI GCNNNNNNNGC 5 cut(s) 1152, 1478, 1832, 2231, 2243
NcoI CCATGG 3 cut(s) 345, 1002, 1429
NdeII GATC 7 cut(s) 172, 255, 660, 1555, 2257, 2273, 2487
NlaIV GGNNCC 2 cut(s) 221, 559
NmuCI GTSAC 4 cut(s) 643, 1159, 1193, 1328
NsbI TGCGCA 2 cut(s) 819, 2200
NspI RCATGY 3 cut(s) 777, 1183, 2234
PaeR7I CTCGAG 2 cut(s) 224, 1279
PciI ACATGT 1 cut(s) 1179
PciSI GCTCTTC 2 cut(s) 993, 1926
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PctI GAATGC 1 cut(s) 933
PfeI GAWTC 8 cut(s) 120, 383, 811, 875, 1348, 1520, 1841, 1897
PflMI CCANNNNNTGG 1 cut(s) 721
PkrI GCNGC 9 cut(s) 156, 159, 907, 1237, 1240, 1693, 1849, 2167, 2236
Ppu21I YACGTR 3 cut(s) 237, 296, 1385
PscI ACATGT 1 cut(s) 1179
PshBI ATTAAT 1 cut(s) 2397
PsiI TTATAA 1 cut(s) 975
Psp6I CCWGG 2 cut(s) 1523, 2374
PspGI CCWGG 2 cut(s) 1523, 2374
PspN4I GGNNCC 2 cut(s) 221, 559
PspPI GGNCC 2 cut(s) 220, 954
PspXI VCTCGAGB 1 cut(s) 224
PstNI CAGNNNCTG 2 cut(s) 1694, 1744
PsuI RGATCY 1 cut(s) 1555
PvuII CAGCTG 4 cut(s) 157, 706, 1694, 2165
RsaI GTAC 2 cut(s) 559, 1799
RsaNI GTAC 2 cut(s) 558, 1798
SapI GCTCTTC 2 cut(s) 993, 1926
SaqAI TTAA 9 cut(s) 827, 1037, 1400, 1454, 2028, 2042, 2138, 2397, 2503
SatI GCNGC 9 cut(s) 155, 158, 906, 1236, 1239, 1692, 1848, 2166, 2235
Sau3AI GATC 7 cut(s) 172, 255, 660, 1555, 2257, 2273, 2487
Sau96I GGNCC 2 cut(s) 220, 954
ScrFI CCNGG 2 cut(s) 1525, 2376
SduI GDGCHC 1 cut(s) 2079
SfaNI GCATC 6 cut(s) 610, 838, 1198, 1397, 1917, 2186
SfcI CTRYAG 1 cut(s) 2169
Sfr274I CTCGAG 2 cut(s) 224, 1279
SinI GGWCC 1 cut(s) 954
SlaI CTCGAG 2 cut(s) 224, 1279
SmlI CTYRAG 6 cut(s) 224, 826, 839, 1279, 1514, 2027
SmoI CTYRAG 6 cut(s) 224, 826, 839, 1279, 1514, 2027
SnaBI TACGTA 1 cut(s) 237
SsiI CCGC 1 cut(s) 905
SspI AATATT 1 cut(s) 2296
SspMI CTAG 5 cut(s) 417, 1062, 1356, 1703, 1790
StyD4I CCNGG 2 cut(s) 1523, 2374
StyI CCWWGG 5 cut(s) 345, 1002, 1429, 2262, 2307
TaaI ACNGT 6 cut(s) 428, 643, 763, 1199, 1641, 2270
TaiI ACGT 8 cut(s) 46, 239, 298, 696, 1387, 1673, 2217, 2383
TaqII GACCGA 1 cut(s) 1220
TauI GCSGC 1 cut(s) 908
TfiI GAWTC 8 cut(s) 120, 383, 811, 875, 1348, 1520, 1841, 1897
Tru1I TTAA 9 cut(s) 827, 1037, 1400, 1454, 2028, 2042, 2138, 2397, 2503
Tru9I TTAA 9 cut(s) 827, 1037, 1400, 1454, 2028, 2042, 2138, 2397, 2503
TscAI CASTG 4 cut(s) 670, 861, 2275, 2444
TseFI GTSAC 4 cut(s) 643, 1159, 1193, 1328
TseI GCWGC 8 cut(s) 154, 157, 1235, 1238, 1691, 1847, 2165, 2234
Tsp45I GTSAC 4 cut(s) 643, 1159, 1193, 1328
TspGWI ACGGA 2 cut(s) 777, 1758
TspRI CASTG 4 cut(s) 670, 861, 2275, 2444
Van91I CCANNNNNTGG 1 cut(s) 721
Vha464I CTTAAG 2 cut(s) 826, 2027
VpaK11BI GGWCC 1 cut(s) 954
VspI ATTAAT 1 cut(s) 2397
XapI RAATTY 6 cut(s) 86, 137, 1570, 1664, 1873, 2454
XceI RCATGY 3 cut(s) 777, 1183, 2234
XhoI CTCGAG 2 cut(s) 224, 1279
XmiI GTMKAC 1 cut(s) 341
XspI CTAG 5 cut(s) 417, 1062, 1356, 1703, 1790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.