Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001287.1

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Reverse (-)

116212 .. 117225

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001287.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgagaaaccctgcacttcacctaagacattatcacatgtccatctgctccaagcagcaattcctcaacttctcctcattaccatcccctgttctcgaatcacaaaacccatgtcttcgaatccaaaccctccaaaccgacaggcttgcattagtccatctcttgcaactaggcgtttcagacaaacccattttgttcttcaagagaatccatgctcagattcttacatcgggctttcaagaagatgttttccttgccaatcttctactggactcgtacaagaaatctgggtcgattgtttatgcacggaagctgtttgatagaatgcctgagaggaactccgttacttggtcttccatggtttctacgtataccaagcatgggaagagcgaagaagcgctgaaggtgttttcggagttccataggagttctgatgggaggccgaacgagtataccttacctagtgttattcgggcttgtacgcaatttggaggggttgatcaaggtgcccaagtgcattgttttgttgttaagactggttttgagctggaagtctttgtgggtacttctttaattgacttttatgtaaaaatgggggatatagaagaggcgagattgatttttgatggtttaaaagttaaaagtgcggttacttggactattgttatagcagggtatgcgaaaagtggaagaagtgaagcggctttgaagttgttttatcatatgaaagacactgatgttcttcctgataaatatgtgctctctgctcttctgacagcatgttctgccctcaagttcattggaggcggcaagcaaattcatgctcatgtgctgagaaggggaacagaaatggatgtttcagtggttaatgtactaatagatttctacacaaagtgcggtcaagtccaggcaggacataaactatttgataagatggtagataaggaccttatttcatggaccacaatgataagcagggtacatgcaaaactcgatgcacatggaggcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

337

Amino Acids

37.81

Weight (kDa)

9.09

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	506
AccI	GTMKAC	2 cut(s)	371, 452
AciI	CCGC	4 cut(s)	647, 701, 807, 897
AcsI	RAATTY	1 cut(s)	816
AcuI	CTGAAG	1 cut(s)	422
AdeI	CACNNNGTG	1 cut(s)	894
AfaI	GTAC	5 cut(s)	278, 481, 565, 873, 981
AfeI	AGCGCT	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	348, 381
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	202, 239, 709
AjnI	CCWGG	1 cut(s)	906
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	313, 547
AluI	AGCT	2 cut(s)	313, 547
Alw21I	GWGCWC	1 cut(s)	762
Aor51HI	AGCGCT	1 cut(s)	399
AoxI	GGCC	2 cut(s)	440, 1006
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	816
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	3 cut(s)	946, 960, 1007
AsuHPI	GGTGA	1 cut(s)	11
AsuII	TTCGAA	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	946, 960
BaeGI	GKGCMC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	506
BbsI	GAAGAC	2 cut(s)	107, 345
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	6 cut(s)	50, 91, 165, 428, 620, 928
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	908
BclI	TGATCA	1 cut(s)	499
BfaI	CTAG	2 cut(s)	170, 462
BfoI	RGCGCY	1 cut(s)	401
BisI	GCNGC	3 cut(s)	56, 702, 808
BlsI	GCNGC	3 cut(s)	57, 703, 809
Bme1390I	CCNGG	1 cut(s)	908
Bme18I	GGWCC	2 cut(s)	946, 960
BmgT120I	GGNCC	3 cut(s)	946, 960, 1007
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	1 cut(s)	908
BmsI	GCATC	1 cut(s)	985
BpiI	GAAGAC	2 cut(s)	107, 345
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	776
BsaAI	YACGTR	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 381
Bse1I	ACTGG	2 cut(s)	273, 541
BseBI	CCWGG	1 cut(s)	908
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	83, 859
BseLI	CCNNNNNNNGG	2 cut(s)	348, 381
BseMII	CTCAG	3 cut(s)	230, 321, 824
BseNI	ACTGG	2 cut(s)	273, 541
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	442, 1008
BshNI	GGYRCC	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	762
BslI	CCNNNNNNNGG	2 cut(s)	348, 381
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	442, 1008
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	511, 762
Bsp143I	GATC	1 cut(s)	499
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	4 cut(s)	647, 701, 807, 897
BspANI	GGCC	2 cut(s)	442, 1008
BspCNI	CTCAG	3 cut(s)	229, 322, 825
BspLI	GGNNCC	1 cut(s)	508
BspQI	GCTCTTC	2 cut(s)	380, 774
BspT104I	TTCGAA	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	506
BsrI	ACTGG	2 cut(s)	273, 541
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	499
BssNAI	GTATAC	2 cut(s)	372, 453
BssT1I	CCWWGG	1 cut(s)	357
Bst1107I	GTATAC	2 cut(s)	372, 453
Bst2UI	CCWGG	1 cut(s)	908
Bst6I	CTCTTC	3 cut(s)	380, 600, 774
BstAPI	GCANNNNNTGC	2 cut(s)	677, 785
BstBAI	YACGTR	1 cut(s)	369
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	147, 812
BstDEI	CTNAG	4 cut(s)	23, 216, 330, 833
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	83, 859
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	1 cut(s)	502
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 785
BstNI	CCWGG	1 cut(s)	908
BstNSI	RCATGY	3 cut(s)	40, 783, 986
BstSCI	CCNGG	1 cut(s)	906
BstSLI	GKGCMC	1 cut(s)	511
BstSNI	TACGTA	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	2 cut(s)	107, 345
BstZ17I	GTATAC	2 cut(s)	372, 453
BsuRI	GGCC	2 cut(s)	442, 1008
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	83, 859
BtsIMutI	CAGTG	2 cut(s)	732, 867
Cac8I	GCNNGC	2 cut(s)	147, 812
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	946, 960, 1007
Csp6I	GTAC	5 cut(s)	277, 480, 564, 872, 980
CviJI	RGCY	8 cut(s)	145, 234, 313, 442, 476, 547, 704, 1008
CviKI_1	RGCY	8 cut(s)	145, 234, 313, 442, 476, 547, 704, 1008
CviQI	GTAC	5 cut(s)	277, 480, 564, 872, 980
DdeI	CTNAG	4 cut(s)	23, 216, 330, 833
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
DraI	TTTAAA	1 cut(s)	633
DraIII	CACNNNGTG	1 cut(s)	894
Eam1104I	CTCTTC	3 cut(s)	380, 600, 774
EarI	CTCTTC	3 cut(s)	380, 600, 774
Eco105I	TACGTA	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	946, 960
Eco47III	AGCGCT	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	422
EcoO109I	RGGNCCY	2 cut(s)	946, 1007
EcoRII	CCWGG	1 cut(s)	906
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	2 cut(s)	371, 452
Fnu4HI	GCNGC	3 cut(s)	56, 702, 808
FokI	GGATG	2 cut(s)	70, 866
Fsp4HI	GCNGC	3 cut(s)	56, 702, 808
FspBI	CTAG	2 cut(s)	170, 462
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	3 cut(s)	56, 702, 808
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	442, 1008
HhaI	GCGC	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	5 cut(s)	98, 120, 207, 220, 272
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	2 cut(s)	372, 453
Hpy188I	TCNGA	5 cut(s)	181, 219, 415, 433, 774
Hpy188III	TCNNGA	4 cut(s)	95, 202, 239, 746
Hpy8I	GTNNAC	2 cut(s)	372, 453
HpyAV	CCTTC	2 cut(s)	397, 831
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	7 cut(s)	14, 149, 166, 305, 517, 986, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 785
HpyF3I	CTNAG	4 cut(s)	23, 216, 330, 833
HpySE526I	ACGT	1 cut(s)	368
HspAI	GCGC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	499
LguI	GCTCTTC	2 cut(s)	380, 774
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	2 cut(s)	170, 462
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	343, 649
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MhlI	GDGCHC	2 cut(s)	511, 762
MluCI	AATT	4 cut(s)	59, 485, 573, 816
MlyI	GAGTC	1 cut(s)	266
MseI	TTAA	6 cut(s)	531, 572, 632, 639, 867, 1012
MslI	CAYNNNNRTG	1 cut(s)	825
MspR9I	CCNGG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	908
MwoI	GCNNNNNNNGC	2 cut(s)	677, 785
NcoI	CCATGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	1 cut(s)	499
NlaIV	GGNNCC	1 cut(s)	508
NspI	RCATGY	3 cut(s)	40, 783, 986
NspV	TTCGAA	1 cut(s)	118
PciI	ACATGT	1 cut(s)	36
PciSI	GCTCTTC	2 cut(s)	380, 774
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	4 cut(s)	98, 120, 207, 220
PkrI	GCNGC	3 cut(s)	57, 703, 809
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	369
PpuMI	RGGWCCY	1 cut(s)	946
PscI	ACATGT	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	1 cut(s)	906
PspGI	CCWGG	1 cut(s)	906
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	3 cut(s)	946, 960, 1007
PspPPI	RGGWCCY	1 cut(s)	946
RsaI	GTAC	5 cut(s)	278, 481, 565, 873, 981
RsaNI	GTAC	5 cut(s)	277, 480, 564, 872, 980
RseI	CAYNNNNRTG	1 cut(s)	825
SapI	GCTCTTC	2 cut(s)	380, 774
SaqAI	TTAA	6 cut(s)	531, 572, 632, 639, 867, 1012
SatI	GCNGC	3 cut(s)	56, 702, 808
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	3 cut(s)	946, 960, 1007
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	908
SduI	GDGCHC	2 cut(s)	511, 762
SetI	ASST	9 cut(s)	24, 315, 371, 408, 458, 463, 508, 549, 951
SfaNI	GCATC	1 cut(s)	985
SfuI	TTCGAA	1 cut(s)	118
SinI	GGWCC	2 cut(s)	946, 960
SmiMI	CAYNNNNRTG	1 cut(s)	825
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
SnaBI	TACGTA	1 cut(s)	369
Sse9I	AATT	4 cut(s)	59, 485, 573, 816
SsiI	CCGC	4 cut(s)	647, 701, 807, 897
SspMI	CTAG	2 cut(s)	170, 462
StyD4I	CCNGG	1 cut(s)	906
StyI	CCWWGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	4 cut(s)	96, 118, 293, 993
TasI	AATT	4 cut(s)	59, 485, 573, 816
TatI	WGTACW	1 cut(s)	871
TauI	GCSGC	2 cut(s)	704, 810
TfiI	GAWTC	4 cut(s)	98, 120, 207, 220
Tru1I	TTAA	6 cut(s)	531, 572, 632, 639, 867, 1012
Tru9I	TTAA	6 cut(s)	531, 572, 632, 639, 867, 1012
TscAI	CASTG	2 cut(s)	739, 867
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	740, 787, 809, 945
TspGWI	ACGGA	2 cut(s)	322, 331
TspRI	CASTG	2 cut(s)	739, 867
VpaK11BI	GGWCC	2 cut(s)	946, 960
XapI	RAATTY	1 cut(s)	816
XceI	RCATGY	3 cut(s)	40, 783, 986
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmiI	GTMKAC	2 cut(s)	371, 452
XspI	CTAG	2 cut(s)	170, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.