Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Forward (+)

29732058 .. 29732405

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG273600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTTTCTATGTATACCAAGCATGGGAAGAGCGAAGAAGCGCTGAAGGTGTTTTCGGAGTTCCATAGGAGTTCTGATGGGAGACCGAATGAGTATACCTTGCCTAGTGTTATTCGGGCTTGTACGCAATTTGGAGGGGTTGATCAAGGTGCCCAAGTGCATTGTTTTGTTGTTAAGACTGGTTTTGATCCGGAAGTCTTTGTGGGTACTTCTTTAATTGATTTTTATGTAAAAATGGGGGATATAGAAGAGGCGAGAATGATTTTTGATGGTTTAAAAGTTAAAAGTGCGGTTACTTGGACTATAGTTATAGGTATGCGAAAAGTGGAAGAAGTGAGGCGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

115

Amino Acids

12.97

Weight (kDa)

6.83

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	2 cut(s)	14, 95
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	2 cut(s)	290, 340
AclWI	GGATC	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	124, 208
AfeI	AGCGCT	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	190
Aor51HI	AGCGCT	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	149
BccI	CCATC	2 cut(s)	71, 263
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	184
BseSI	GKGCMC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	142, 187
BspACI	CCGC	2 cut(s)	290, 340
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	142, 187
BssNAI	GTATAC	2 cut(s)	15, 96
Bst1107I	GTATAC	2 cut(s)	15, 96
Bst6I	CTCTTC	2 cut(s)	23, 243
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	145, 190
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	142, 187
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	154
BstZ17I	GTATAC	2 cut(s)	15, 96
CfoI	GCGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	123, 207
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	2 cut(s)	119, 343
CviKI_1	RGCY	2 cut(s)	119, 343
CviQI	GTAC	2 cut(s)	123, 207
DpnI	GATC	2 cut(s)	144, 189
DpnII	GATC	2 cut(s)	142, 187
DraI	TTTAAA	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	23, 243
EarI	CTCTTC	2 cut(s)	23, 243
Eco31I	GGTCTC	1 cut(s)	76
Eco47III	AGCGCT	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	65
FaeI	CATG	1 cut(s)	26
FatI	CATG	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	2 cut(s)	14, 95
Fnu4HI	GCNGC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	44
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	15, 96
Hpy188I	TCNGA	2 cut(s)	58, 76
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	2 cut(s)	15, 96
HpyAV	CCTTC	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	142, 187
LguI	GCTCTTC	1 cut(s)	23
LpnPI	CCDG	2 cut(s)	165, 204
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	144, 189
MboI	GATC	2 cut(s)	142, 187
MboII	GAAGA	4 cut(s)	40, 47, 260, 341
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	128, 216
MnlI	CCTC	3 cut(s)	128, 244, 330
MroI	TCCGGA	1 cut(s)	190
MseI	TTAA	4 cut(s)	174, 215, 275, 282
MspI	CCGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	142, 187
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	151
RsaI	GTAC	2 cut(s)	124, 208
RsaNI	GTAC	2 cut(s)	123, 207
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	174, 215, 275, 282
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	2 cut(s)	142, 187
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	4 cut(s)	51, 101, 151, 316
SfcI	CTRYAG	1 cut(s)	303
Sse9I	AATT	2 cut(s)	128, 216
SsiI	CCGC	2 cut(s)	290, 340
SspMI	CTAG	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	128, 216
TauI	GCSGC	1 cut(s)	343
Tru1I	TTAA	4 cut(s)	174, 215, 275, 282
Tru9I	TTAA	4 cut(s)	174, 215, 275, 282
XmiI	GTMKAC	2 cut(s)	14, 95
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.