Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003255.1

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Reverse (-)

72252 .. 73175

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003255.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgagaaactctgcacttcacctaagacattatcacaagtccatcagctccaagcagcaattcctcaacttctcctcattaccatcccctgttctggaatcacaaaacccatgtcttcgaatccaaaccctccaaacccacaggcttgcattagtccatctcttgcaactaggcgtttcagacaaacccattttgttcttccagagaatccatgctcagattcttacatcgggctttcaagaagatgttttccttgccaatcttctactggactcgtacaagaaatctgggtcgattgtttatgcacggaagctgtttgatagaatgcctgagaggaactccgttacttggtcttccatggtttctatgtataccaagcatgggaagagcgaagaagcgctgaaggtgttttcggagttccataggagttctgatgggagaccgaatgagtataccttgcctagtgttatttgggcttgtacgcaatttggaggggttgatcaaggtgcccaagtgcattgttttgttgttaagactggttttgatctggaagtctttgtgggtacttctttaattgatttttatgtaaaaatgggggatatagaagaggcgagattgatttttgatggtttaaaagttaaaagtgcggttacttggactatagttatagcagggtatgcaaaaagtggaagaagtgaggcggctttgaagttgttttatcatatgagagacactgatgttcttcctgataaatatgttttatcatatgagacattatttcgttttgttattcctggaaatgaaattccggagtggttcgctcatcaaactgcagcaccttttgtaaagtatccctttgtatccaggttggtggagtatgaaggttttgggatttgcattgtgttctgttttggcactacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

307

Amino Acids

34.96

Weight (kDa)

8.49

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	506
AccI	GTMKAC	2 cut(s)	371, 452
AccIII	TCCGGA	1 cut(s)	808
AciI	CCGC	2 cut(s)	647, 701
AcsI	RAATTY	1 cut(s)	804
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	3 cut(s)	278, 481, 565
AfeI	AGCGCT	1 cut(s)	399
AfiI	CCNNNNNNNGG	3 cut(s)	94, 348, 381
AgsI	TTSAA	2 cut(s)	239, 709
AjnI	CCWGG	2 cut(s)	793, 863
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	48, 313
AluI	AGCT	2 cut(s)	48, 313
Alw26I	GTCTC	3 cut(s)	433, 723, 764
Aor13HI	TCCGGA	1 cut(s)	808
Aor51HI	AGCGCT	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	55, 833
ApoI	RAATTY	1 cut(s)	804
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AspLEI	GCGC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	11
AsuII	TTCGAA	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	506
BbsI	GAAGAC	2 cut(s)	107, 345
BbvI	GCAGC	2 cut(s)	67, 845
BccI	CCATC	5 cut(s)	50, 91, 165, 428, 620
BciT130I	CCWGG	2 cut(s)	795, 865
BciVI	GTATCC	2 cut(s)	861, 871
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	433, 723, 764
BfaI	CTAG	2 cut(s)	170, 462
BfmI	CTRYAG	2 cut(s)	660, 831
BfoI	RGCGCY	1 cut(s)	401
BfuI	GTATCC	2 cut(s)	861, 871
BisI	GCNGC	3 cut(s)	56, 702, 834
BlsI	GCNGC	3 cut(s)	57, 703, 835
Bme1390I	CCNGG	2 cut(s)	795, 865
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	2 cut(s)	795, 865
BpiI	GAAGAC	2 cut(s)	107, 345
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu14I	TTCGAA	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 348, 381
Bse1I	ACTGG	2 cut(s)	273, 541
BseAI	TCCGGA	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	795, 865
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	94, 348, 381
BseMII	CTCAG	2 cut(s)	230, 321
BseNI	ACTGG	2 cut(s)	273, 541
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	67, 845
BshNI	GGYRCC	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	809
BslI	CCNNNNNNNGG	3 cut(s)	94, 348, 381
BsmAI	GTCTC	3 cut(s)	433, 723, 764
BsmI	GAATGC	1 cut(s)	330
Bso31I	GGTCTC	1 cut(s)	433
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp13I	TCCGGA	1 cut(s)	808
Bsp143I	GATC	2 cut(s)	499, 544
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	2 cut(s)	647, 701
BspCNI	CTCAG	2 cut(s)	229, 322
BspEI	TCCGGA	1 cut(s)	808
BspLI	GGNNCC	1 cut(s)	508
BspMAI	CTGCAG	1 cut(s)	835
BspQI	GCTCTTC	1 cut(s)	380
BspT104I	TTCGAA	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	273, 541
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	499, 544
BssNAI	GTATAC	2 cut(s)	372, 453
BssT1I	CCWWGG	1 cut(s)	357
Bst1107I	GTATAC	2 cut(s)	372, 453
Bst2UI	CCWGG	2 cut(s)	795, 865
Bst6I	CTCTTC	2 cut(s)	380, 600
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	23, 216, 330
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	2 cut(s)	502, 547
BstMAI	GTCTC	3 cut(s)	433, 723, 764
BstMBI	GATC	2 cut(s)	499, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	2 cut(s)	795, 865
BstSCI	CCNGG	2 cut(s)	793, 863
BstSFI	CTRYAG	2 cut(s)	660, 831
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	2 cut(s)	67, 845
BstV2I	GAAGAC	2 cut(s)	107, 345
BstXI	CCANNNNNNTGG	1 cut(s)	871
BstZ17I	GTATAC	2 cut(s)	372, 453
BsuI	GTATCC	2 cut(s)	861, 871
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	277, 480, 564
CviAII	CATG	5 cut(s)	111, 212, 358, 380, 921
CviJI	RGCY	6 cut(s)	48, 145, 234, 313, 476, 704
CviKI_1	RGCY	6 cut(s)	48, 145, 234, 313, 476, 704
CviQI	GTAC	3 cut(s)	277, 480, 564
DdeI	CTNAG	3 cut(s)	23, 216, 330
DpnI	GATC	2 cut(s)	501, 546
DpnII	GATC	2 cut(s)	499, 544
DraI	TTTAAA	1 cut(s)	633
Eam1104I	CTCTTC	2 cut(s)	380, 600
EarI	CTCTTC	2 cut(s)	380, 600
Eco130I	CCWWGG	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	433
Eco47III	AGCGCT	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	793, 863
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	5 cut(s)	114, 215, 361, 383, 924
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FatI	CATG	5 cut(s)	110, 211, 357, 379, 920
FauNDI	CATATG	2 cut(s)	723, 766
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	2 cut(s)	371, 452
Fnu4HI	GCNGC	3 cut(s)	56, 702, 834
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	3 cut(s)	56, 702, 834
FspBI	CTAG	2 cut(s)	170, 462
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	3 cut(s)	56, 702, 834
HaeII	RGCGCY	1 cut(s)	401
HapII	CCGG	1 cut(s)	809
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	5 cut(s)	114, 215, 361, 383, 924
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	5 cut(s)	98, 120, 207, 220, 272
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	2 cut(s)	372, 453
Hpy188I	TCNGA	4 cut(s)	181, 219, 415, 433
Hpy188III	TCNNGA	6 cut(s)	95, 202, 239, 548, 746, 809
Hpy8I	GTNNAC	2 cut(s)	372, 453
HpyAV	CCTTC	2 cut(s)	397, 875
HpyCH4V	TGCA	8 cut(s)	14, 149, 166, 305, 517, 680, 833, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	3 cut(s)	23, 216, 330
Hsp92II	CATG	5 cut(s)	114, 215, 361, 383, 924
HspAI	GCGC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	808
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	499, 544
LguI	GCTCTTC	1 cut(s)	380
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	67, 845
MaeI	CTAG	2 cut(s)	170, 462
MaeIII	GTNAC	2 cut(s)	343, 649
MalI	GATC	2 cut(s)	501, 546
MboI	GATC	2 cut(s)	499, 544
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	4 cut(s)	59, 485, 573, 804
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	7 cut(s)	74, 85, 140, 327, 485, 601, 691
MroI	TCCGGA	1 cut(s)	808
MseI	TTAA	4 cut(s)	531, 572, 632, 639
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	2 cut(s)	795, 865
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	2 cut(s)	795, 865
MwoI	GCNNNNNNNGC	1 cut(s)	677
NcoI	CCATGG	1 cut(s)	357
NdeI	CATATG	2 cut(s)	723, 766
NdeII	GATC	2 cut(s)	499, 544
NlaIII	CATG	5 cut(s)	114, 215, 361, 383, 924
NlaIV	GGNNCC	1 cut(s)	508
NspV	TTCGAA	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	380
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	4 cut(s)	98, 120, 207, 220
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	3 cut(s)	57, 703, 835
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	793, 863
PspGI	CCWGG	2 cut(s)	793, 863
PspN4I	GGNNCC	1 cut(s)	508
PstI	CTGCAG	1 cut(s)	835
RsaI	GTAC	3 cut(s)	278, 481, 565
RsaNI	GTAC	3 cut(s)	277, 480, 564
SapI	GCTCTTC	1 cut(s)	380
SaqAI	TTAA	4 cut(s)	531, 572, 632, 639
SatI	GCNGC	3 cut(s)	56, 702, 834
Sau3AI	GATC	2 cut(s)	499, 544
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	795, 865
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	9 cut(s)	24, 50, 315, 408, 458, 508, 841, 869, 886
SfcI	CTRYAG	2 cut(s)	660, 831
SfuI	TTCGAA	1 cut(s)	118
Sse9I	AATT	4 cut(s)	59, 485, 573, 804
SsiI	CCGC	2 cut(s)	647, 701
SspMI	CTAG	2 cut(s)	170, 462
StyD4I	CCNGG	2 cut(s)	793, 863
StyI	CCWWGG	1 cut(s)	357
TaqI	TCGA	2 cut(s)	118, 293
TaqII	GACCGA	1 cut(s)	457
TasI	AATT	4 cut(s)	59, 485, 573, 804
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	4 cut(s)	98, 120, 207, 220
Tru1I	TTAA	4 cut(s)	531, 572, 632, 639
Tru9I	TTAA	4 cut(s)	531, 572, 632, 639
TscAI	CASTG	1 cut(s)	739
TseI	GCWGC	2 cut(s)	55, 833
TspDTI	ATGAA	2 cut(s)	816, 894
TspGWI	ACGGA	2 cut(s)	322, 331
TspRI	CASTG	1 cut(s)	739
XapI	RAATTY	1 cut(s)	804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmiI	GTMKAC	2 cut(s)	371, 452
XspI	CTAG	2 cut(s)	170, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.