Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Reverse (-)

19447684 .. 19448860

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0207400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGGGGAAATCAATCGTACCAGAGCATGGCCAACGGGAGCATGGCCCGACCGTCTCCATCGACCTCGTCAAGATCGAAATCAACTCCTCCGTCCTCAAAGACGAGTTCGTCGCCTACCGCCTCGGCCTCATCCCCTTAACCAGCGATCGCGCCATGAGCATGGGCTTCTCACGTGACTGCGACGCCTGCGATGATGACGGCCAGTGCAAGTACTGCTCCGTCGAGTTTCACCTCCGCGCTCGCTGCCACTCCGACCAAACCCTAGATGTCACCAACAAGGAACTCCTCAGCTCCGACCACACCGTCGTCCCGTCAATTTCTCAACGCCTCCGGTTACGAAGCTTCCGAACAGAGAGGGATTATCATATTGAAGTTGGAAAGGGGGCAAGAGCTGAGGCTAAGGGCTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

138

Amino Acids

15.53

Weight (kDa)

6.05

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	110, 305
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccII	CGCG	2 cut(s)	153, 240
AciI	CCGC	2 cut(s)	121, 238
AcoI	YGGCCR	2 cut(s)	31, 202
AcvI	CACGTG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	21, 215
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	374
AluBI	AGCT	3 cut(s)	294, 345, 395
AluI	AGCT	3 cut(s)	294, 345, 395
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	4 cut(s)	31, 46, 127, 202
ApeKI	GCWGC	1 cut(s)	246
AsiSI	GCGATCGC	1 cut(s)	151
AspLEI	GCGC	2 cut(s)	155, 242
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	224, 265
BalI	TGGCCA	1 cut(s)	33
BbrPI	CACGTG	1 cut(s)	176
BbvCI	CCTCAGC	2 cut(s)	290, 396
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	266, 415
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
BmcAI	AGTACT	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	47
Bpu10I	CCTNAGC	3 cut(s)	290, 396, 402
BsaAI	YACGTR	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	304, 387
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	79, 278
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	2 cut(s)	153, 240
Bsh1285I	CGRYCG	2 cut(s)	54, 151
BshFI	GGCC	4 cut(s)	33, 48, 129, 204
BsiEI	CGRYCG	2 cut(s)	54, 151
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	4 cut(s)	33, 48, 129, 204
Bsp143I	GATC	2 cut(s)	75, 148
BspACI	CCGC	2 cut(s)	121, 238
BspANI	GGCC	4 cut(s)	33, 48, 129, 204
BspCNI	CTCAG	2 cut(s)	303, 388
BspFNI	CGCG	2 cut(s)	153, 240
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	75, 148
BssNI	GRCGYC	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	55, 307
BstACI	GRCGYC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	190, 244
BstDEI	CTNAG	3 cut(s)	290, 396, 402
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	2 cut(s)	153, 240
BstHHI	GCGC	2 cut(s)	155, 242
BstKTI	GATC	2 cut(s)	78, 151
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	75, 148
BstMCI	CGRYCG	2 cut(s)	54, 151
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 189, 216, 246
BstUI	CGCG	2 cut(s)	153, 240
BstV1I	GCAGC	1 cut(s)	233
BstXI	CCANNNNNNTGG	1 cut(s)	163
BsuRI	GGCC	4 cut(s)	33, 48, 129, 204
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	190, 244
CfoI	GCGC	2 cut(s)	155, 242
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	20, 214
CviAII	CATG	4 cut(s)	29, 44, 157, 163
CviQI	GTAC	2 cut(s)	20, 214
DdeI	CTNAG	3 cut(s)	290, 396, 402
DpnI	GATC	2 cut(s)	77, 150
DpnII	GATC	2 cut(s)	75, 148
DrdI	GACNNNNNNGTC	2 cut(s)	110, 305
DseDI	GACNNNNNNGTC	2 cut(s)	110, 305
EaeI	YGGCCR	2 cut(s)	31, 202
Eco72I	CACGTG	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	4 cut(s)	32, 47, 160, 166
FaiI	YATR	5 cut(s)	30, 45, 158, 164, 369
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	4 cut(s)	28, 43, 156, 162
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	2 cut(s)	266, 415
GlaI	GCGC	2 cut(s)	154, 241
GluI	GCNGC	1 cut(s)	247
HaeIII	GGCC	4 cut(s)	33, 48, 129, 204
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	155, 242
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	32, 47, 160, 166
Hin6I	GCGC	2 cut(s)	153, 240
HinP1I	GCGC	2 cut(s)	153, 240
HindIII	AAGCTT	1 cut(s)	343
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	224, 265
Hpy188I	TCNGA	3 cut(s)	256, 298, 350
Hpy188III	TCNNGA	1 cut(s)	73
Hpy99I	CGWCG	4 cut(s)	116, 188, 227, 311
HpyCH4III	ACNGT	2 cut(s)	55, 307
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 189, 216, 246
HpyF3I	CTNAG	3 cut(s)	290, 396, 402
HpySE526I	ACGT	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	32, 47, 160, 166
HspAI	GCGC	2 cut(s)	153, 240
Kzo9I	GATC	2 cut(s)	75, 148
LmnI	GCTCC	3 cut(s)	40, 224, 299
LpnPI	CCDG	5 cut(s)	36, 157, 202, 218, 347
Lsp1109I	GCAGC	1 cut(s)	233
MaeI	CTAG	2 cut(s)	266, 415
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	3 cut(s)	176, 271, 336
MalI	GATC	2 cut(s)	77, 150
MboI	GATC	2 cut(s)	75, 148
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	33
MmeI	TCCRAC	3 cut(s)	279, 321, 358
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	33
MspI	CCGG	1 cut(s)	334
MvnI	CGCG	2 cut(s)	153, 240
MwoI	GCNNNNNNNGC	4 cut(s)	159, 189, 216, 246
NdeII	GATC	2 cut(s)	75, 148
NlaIII	CATG	4 cut(s)	32, 47, 160, 166
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	176, 271
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 346
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	248
Ple19I	CGATCG	1 cut(s)	151
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	176
PspCI	CACGTG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	68
PvuI	CGATCG	1 cut(s)	151
RgaI	GCGATCGC	1 cut(s)	151
RsaI	GTAC	2 cut(s)	21, 215
RsaNI	GTAC	2 cut(s)	20, 214
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	2 cut(s)	75, 148
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	1 cut(s)	215
SetI	ASST	6 cut(s)	69, 178, 237, 296, 347, 397
SfaAI	GCGATCGC	1 cut(s)	151
SgfI	GCGATCGC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	121, 238
SspMI	CTAG	2 cut(s)	266, 415
TaaI	ACNGT	2 cut(s)	55, 307
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	3 cut(s)	63, 78, 225
TasI	AATT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	176, 271
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	2 cut(s)	176, 271
TspGWI	ACGGA	2 cut(s)	82, 211
TspRI	CASTG	1 cut(s)	212
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	2 cut(s)	266, 415
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.