Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Forward (+)

27932507 .. 27934897

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGAGAAACTCTGCACTTCACCTAAGACATTATCACAAGTCCATCAGCTCCAAGCAGCAATCCCTCAACTTCTCCTCATTACCATCCCCTGTTCTCGAATCGCAAAACCCATGTCTTCGAATCCAAACCCTCCAAACCCACAGGCTTGCATTAGTCAATCTCTTACAACTAGGCGTTTCAGACAAACCCATTTTGTTCTTCAAGAGAATTCATGCTCAGATTCTCGCATCGGGCTTTCAACATGATGTTTTCCTTGCCAATCTTCTACTGGACTTGTACAAGAAATCTGGGTCTATTGTTTATGCACGGAAGCTGTTCGATAGAATGCCTGAGAGGAACTCCGTTACTTGGTCTTCCATGGTTTCTATGTATACCAAGCATGGGAAGAGCGAAGAAGCGCTGAAGGTGTTTTCGGAGTTCCATAGGAGTTCTGATGGGAGGCCGAATGAGTATACCTTACCTAGTGTTATTCGGGCTTGTACGCAATTTGGAGGGGTTGATCAAGGTGCCCAAGTGCATTGTTTTGTTGTTAAGACTAGTTTTGATCTGGAAGTCTTTGTGGGTACTTCATTGATTGATTTTTATGTAAAAATGGGGGATATAGAAGAGGCGAGATTGATTTTTGATGGTTTAAAAGTTAAAAGTGCGGTTACTTGGACTATAGTTATAGCAGGGTATGCAAAAAGTGGAAGAAGTGAGGCGGCTTTGAAGTTGTTTTATCATATGAGAGACACTGATGTTCTTCCTGATAAATATGTGCTCTCTGCTCTTCTGACCGCATGTTCTGGCATCAAGTTCATTGGAGGTGGCAAGCAAATTCATGCTTATGTGCTGAGAAGGGGAACAGAAATGGATGTTTCGGTGGTTAATGTACTAATTGATTTCTACACAAAGTGCGGTCAAGTCCAGGCAGGACATAAACTATTTGATAAGATGTTAGATAAGGACCTTATTTCATGGACCACAATGATAGCTGGGTACATGCAAAACTCGAAGCACATGGAGGCCGTTAAGCTATTTTCTGAAATGACCAGAATGGGTTGGAAGGCAGATGGATATGGGTGCAGTAGCATTCTTACTTCATGTGGTTCACTTGAGGCTCTGAAACATGGGAGAGAAGTGCACGCTTATACTATCAGGGTTGATCTTGTCTACGAATATTATGTGAAGAATAGTTTGATTGATATGTATGCAAAATGTGATTCCCTGACTGATGCAAGAAGAGTTTTTGATTCCATGACTGATCATAATGTGGTCTCTTACAATGCAATGATTGAAGGATACTCAAGGCAGGATAAGGTGGCTGAAGCTCTTGATCTTTTCAATCTTATGAGGCTTAAATTGGTCCAGCCTAGTATCTTGACATTTGTCAGTCTTCTTGGTGTCTCAGCTGCTTTATTGACCTTGGAATTAAGCAAGCAAATCCATGGGCTGACCACCAAGTATGGGTTATCTTTGGATATTTTTGCTGGCAGTGCTCTCATTGATGTTTATTCCAAGTGTTCATGTATTCGCGAAGCTAAACTTGTATTCGAGGAGATGAATGAAAAAGACATAGTAGTGTGGAATTCAATGTTCTGCGGATACGCCCAACAGCTGGAAAGTGAAGAGGCTCTTAAGTTGTACTCAGAACTACAATTATCAAGACAAAATCCTAATGAGTTTACTTTTGCTTCCCTAATCTCAGCAGCCAGCAACCTAGCAAGTATCCAACATGGTCAACAGTTCCATAGCCAGATCTTTAAAGTTGGTCTTGAGAATGATCCTTTTGTCACAAATGCCCTTGTGGATATGTATTCCAAGTGTGGAAGCATTAAAGAGGCTCGCAAAATATTTGATTCCAAAACTTTGAAAGATGTTGCCTGTTGGAATTCCATTATCTCAACGTATGCTCATCATGGAGAAGCAGAAAAAGCTCTTCTGATGTTTGAAAAAATGATGAATGAGGGTATAAAACCCAACTATATCACCTTTGTGGGGGTGCTATCAGCTTGTAGCCATGCAGGCCTTGTGGAAGATGGACTTGGTCACTTTGAATCAATGCCTTGGTTTGGAATTGAACCAGGGATAGAACATTATTCTTGCATAGTTTCTCTCTTGGGCCGCGCCGGTAAATTATCTGAAGCTAAGGAATTTATTGAGAAAATGCCAATGAAACCACCAGCAATTATATGGAGGAGTTTACTCAGTTCATGTACAGCTGCAGGTAATGTTGAATTGGGGATCTACGCAGCAGAGATGGCGATTTTGAGTGATCCAATGGATAGTGGATCGTATATCTTACTTTCAAATATGTATGCATCCGAAGGTATGTGGGATGATGTCAAGAGGGTGAGGAAAAAAATGGAGTATAATGGTGTAGTGAAAGAAACCGGACGTAGTTGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

797

Amino Acids

89.24

Weight (kDa)

7.31

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	112 - 160	1.2e-06	PPR repeat family
PPR	PF01535	115 - 142	2.1e-06	PPR repeat
PPR_2	PF13041	215 - 261	1.8e-09	PPR repeat family
PPR	PF01535	217 - 244	2.8e-06	PPR repeat
PPR_2	PF13041	316 - 362	1.1e-08	PPR repeat family
PPR	PF01535	318 - 347	7.4e-07	PPR repeat
PPR_2	PF13041	417 - 460	4.1e-11	PPR repeat family
PPR	PF01535	419 - 445	1.8e-06	PPR repeat
PPR_2	PF13041	517 - 563	3.3e-09	PPR repeat family
PPR_2	PF13041	618 - 666	3.1e-10	PPR repeat family
PPR	PF01535	622 - 651	5.9e-06	PPR repeat
E_motif	PF20431	737 - 795	3.6e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2195
AccB1I	GGYRCC	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	1597
AccI	GTMKAC	3 cut(s)	371, 452, 1152
AccII	CGCG	2 cut(s)	1515, 2106
AciI	CCGC	6 cut(s)	647, 701, 777, 897, 1581, 2104
AclWI	GGATC	4 cut(s)	1757, 2231, 2249, 2278
AcsI	RAATTY	5 cut(s)	207, 816, 1567, 1870, 2132
AcuI	CTGAAG	3 cut(s)	422, 1326, 2142
AdeI	CACNNNGTG	1 cut(s)	894
AfaI	GTAC	7 cut(s)	278, 481, 565, 873, 980, 1625, 2197
AfeI	AGCGCT	1 cut(s)	399
AfiI	CCNNNNNNNGG	6 cut(s)	348, 381, 1446, 1597, 1977, 2051
AflII	CTTAAG	1 cut(s)	1616
AhlI	ACTAGT	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	906, 2062
AjuI	GAANNNNNNNTTGG	2 cut(s)	2007, 2039
AleI	CACNNNNGTG	1 cut(s)	1973
Alw21I	GWGCWC	3 cut(s)	762, 1125, 1480
Alw26I	GTCTC	3 cut(s)	723, 1261, 1390
Alw44I	GTGCAC	1 cut(s)	1121
AlwI	GGATC	4 cut(s)	1757, 2231, 2249, 2278
Aor51HI	AGCGCT	1 cut(s)	399
AoxI	GGCC	4 cut(s)	440, 1005, 2005, 2101
ApaLI	GTGCAC	1 cut(s)	1121
ApeKI	GCWGC	5 cut(s)	55, 1391, 1688, 2201, 2231
ApoI	RAATTY	5 cut(s)	207, 816, 1567, 1870, 2132
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
Asp700I	GAANNNNTTC	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	400, 2108
AspS9I	GGNCC	4 cut(s)	946, 960, 1345, 2101
AsuHPI	GGTGA	3 cut(s)	11, 1960, 2344
AsuII	TTCGAA	1 cut(s)	118
AvaII	GGWCC	3 cut(s)	946, 960, 1345
BaeGI	GKGCMC	2 cut(s)	511, 1125
BanI	GGYRCC	1 cut(s)	506
BbsI	GAAGAC	3 cut(s)	107, 345, 1367
Bbv12I	GWGCWC	3 cut(s)	762, 1125, 1480
BbvI	GCAGC	5 cut(s)	67, 1378, 1700, 2188, 2243
BccI	CCATC	7 cut(s)	50, 91, 428, 620, 1046, 2012, 2233
BceAI	ACGGC	1 cut(s)	992
BciT130I	CCWGG	2 cut(s)	908, 2064
BciVI	GTATCC	3 cut(s)	1274, 1577, 1718
BclI	TGATCA	2 cut(s)	499, 1243
BcoDI	GTCTC	3 cut(s)	723, 1261, 1390
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	5 cut(s)	170, 462, 537, 1353, 1700
BfmI	CTRYAG	2 cut(s)	660, 2202
BfoI	RGCGCY	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	1616
BfuAI	ACCTGC	1 cut(s)	2195
BfuI	GTATCC	3 cut(s)	1274, 1577, 1718
BglI	GCCNNNNNGGC	1 cut(s)	2004
BglII	AGATCT	1 cut(s)	1737
BisI	GCNGC	7 cut(s)	56, 702, 1392, 1689, 2104, 2202, 2232
BlsI	GCNGC	7 cut(s)	57, 703, 1393, 1690, 2105, 2203, 2233
Bme1390I	CCNGG	2 cut(s)	908, 2064
Bme18I	GGWCC	3 cut(s)	946, 960, 1345
BmgT120I	GGNCC	4 cut(s)	946, 960, 1345, 2101
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	2 cut(s)	908, 2064
BmsI	GCATC	4 cut(s)	236, 798, 1204, 2309
BoxI	GACNNNNGTC	1 cut(s)	1367
BpiI	GAAGAC	3 cut(s)	107, 345, 1367
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu10I	CCTNAGC	1 cut(s)	2127
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	3 cut(s)	1115, 1270, 1775
BsaI	GGTCTC	1 cut(s)	1261
BsaJI	CCNNGG	5 cut(s)	357, 1404, 1426, 2045, 2063
BsaWI	WCCGGW	1 cut(s)	2372
Bsc4I	CCNNNNNNNGG	6 cut(s)	348, 381, 1446, 1597, 1977, 2051
Bse118I	RCCGGY	1 cut(s)	2108
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	1275
BseBI	CCWGG	2 cut(s)	908, 2064
BseDI	CCNNGG	5 cut(s)	357, 1404, 1426, 2045, 2063
BseGI	GGATG	4 cut(s)	83, 859, 2300, 2323
BseLI	CCNNNNNNNGG	6 cut(s)	348, 381, 1446, 1597, 1977, 2051
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	7 cut(s)	230, 321, 824, 1401, 1641, 1698, 2200
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	3 cut(s)	64, 1550, 2191
BseSI	GKGCMC	2 cut(s)	511, 1125
BseXI	GCAGC	5 cut(s)	67, 1378, 1700, 2188, 2243
BseYI	CCCAGC	1 cut(s)	974
BsgI	GTGCAG	1 cut(s)	1084
Bsh1236I	CGCG	2 cut(s)	1515, 2106
BshFI	GGCC	4 cut(s)	442, 1007, 2007, 2103
BshNI	GGYRCC	1 cut(s)	506
BsiHKAI	GWGCWC	3 cut(s)	762, 1125, 1480
BsiSI	CCGG	2 cut(s)	2109, 2373
BslI	CCNNNNNNNGG	6 cut(s)	348, 381, 1446, 1597, 1977, 2051
BsmAI	GTCTC	3 cut(s)	723, 1261, 1390
BsmI	GAATGC	2 cut(s)	330, 1071
BsnI	GGCC	4 cut(s)	442, 1007, 2007, 2103
Bso31I	GGTCTC	1 cut(s)	1261
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	4 cut(s)	511, 762, 1125, 1480
Bsp1407I	TGTACA	2 cut(s)	276, 2195
Bsp19I	CCATGG	2 cut(s)	357, 1426
Bsp68I	TCGCGA	1 cut(s)	1515
BspACI	CCGC	6 cut(s)	647, 701, 777, 897, 1581, 2104
BspANI	GGCC	4 cut(s)	442, 1007, 2007, 2103
BspCNI	CTCAG	7 cut(s)	229, 322, 825, 1400, 1640, 1697, 2199
BspFNI	CGCG	2 cut(s)	1515, 2106
BspLI	GGNNCC	1 cut(s)	508
BspMAI	CTGCAG	1 cut(s)	2206
BspMI	ACCTGC	1 cut(s)	2195
BspPI	GGATC	4 cut(s)	1757, 2231, 2249, 2278
BspQI	GCTCTTC	3 cut(s)	380, 774, 1923
BspT104I	TTCGAA	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	506
BspTI	CTTAAG	1 cut(s)	1616
BspTNI	GGTCTC	1 cut(s)	1261
BsrDI	GCAATG	1 cut(s)	1275
BsrFI	RCCGGY	1 cut(s)	2108
BsrGI	TGTACA	2 cut(s)	276, 2195
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	2108
BssECI	CCNNGG	5 cut(s)	357, 1404, 1426, 2045, 2063
BssNAI	GTATAC	2 cut(s)	372, 453
BssT1I	CCWWGG	4 cut(s)	357, 1404, 1426, 2045
Bst1107I	GTATAC	2 cut(s)	372, 453
Bst2UI	CCWGG	2 cut(s)	908, 2064
Bst4CI	ACNGT	1 cut(s)	1725
Bst6I	CTCTTC	6 cut(s)	380, 600, 774, 1216, 1602, 1923
BstAFI	CTTAAG	1 cut(s)	1616
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstAUI	TGTACA	2 cut(s)	276, 2195
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	8 cut(s)	147, 812, 1125, 1418, 1471, 1693, 1825, 2005
BstDEI	CTNAG	9 cut(s)	23, 216, 330, 833, 1387, 1627, 1684, 2127, 2186
BstDSI	CCRYGG	2 cut(s)	357, 1426
BstF5I	GGATG	4 cut(s)	83, 859, 2300, 2323
BstFNI	CGCG	2 cut(s)	1515, 2106
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	2 cut(s)	400, 2108
BstMAI	GTCTC	3 cut(s)	723, 1261, 1390
BstMWI	GCNNNNNNNGC	5 cut(s)	677, 1475, 1913, 2004, 2240
BstNI	CCWGG	2 cut(s)	908, 2064
BstNSI	RCATGY	2 cut(s)	783, 985
BstPAI	GACNNNNGTC	1 cut(s)	1367
BstSCI	CCNGG	2 cut(s)	906, 2062
BstSFI	CTRYAG	2 cut(s)	660, 2202
BstSLI	GKGCMC	2 cut(s)	511, 1125
BstUI	CGCG	2 cut(s)	1515, 2106
BstV1I	GCAGC	5 cut(s)	67, 1378, 1700, 2188, 2243
BstV2I	GAAGAC	3 cut(s)	107, 345, 1367
BstX2I	RGATCY	2 cut(s)	1737, 2223
BstYI	RGATCY	2 cut(s)	1737, 2223
BstZ17I	GTATAC	2 cut(s)	372, 453
BsuI	GTATCC	3 cut(s)	1274, 1577, 1718
BsuRI	GGCC	4 cut(s)	442, 1007, 2007, 2103
BtgI	CCRYGG	2 cut(s)	357, 1426
BtsCI	GGATG	4 cut(s)	83, 859, 2300, 2323
BtsI	GCAGTG	1 cut(s)	1480
BtsIMutI	CAGTG	2 cut(s)	732, 1480
BtuMI	TCGCGA	1 cut(s)	1515
BveI	ACCTGC	1 cut(s)	2195
Cac8I	GCNNGC	8 cut(s)	147, 812, 1125, 1418, 1471, 1693, 1825, 2005
CfoI	GCGC	2 cut(s)	400, 2108
Cfr10I	RCCGGY	1 cut(s)	2108
Cfr13I	GGNCC	4 cut(s)	946, 960, 1345, 2101
Csp6I	GTAC	7 cut(s)	277, 480, 564, 872, 979, 1624, 2196
CviQI	GTAC	7 cut(s)	277, 480, 564, 872, 979, 1624, 2196
DdeI	CTNAG	9 cut(s)	23, 216, 330, 833, 1387, 1627, 1684, 2127, 2186
DraI	TTTAAA	2 cut(s)	633, 1744
DraIII	CACNNNGTG	1 cut(s)	894
Eam1104I	CTCTTC	6 cut(s)	380, 600, 774, 1216, 1602, 1923
EarI	CTCTTC	6 cut(s)	380, 600, 774, 1216, 1602, 1923
Eco130I	CCWWGG	4 cut(s)	357, 1404, 1426, 2045
Eco147I	AGGCCT	1 cut(s)	2007
Eco31I	GGTCTC	1 cut(s)	1261
Eco47I	GGWCC	3 cut(s)	946, 960, 1345
Eco47III	AGCGCT	1 cut(s)	399
Eco57I	CTGAAG	3 cut(s)	422, 1326, 2142
EcoO109I	RGGNCCY	1 cut(s)	946
EcoRI	GAATTC	3 cut(s)	207, 1567, 1870
EcoRII	CCWGG	2 cut(s)	906, 2062
EcoT14I	CCWWGG	4 cut(s)	357, 1404, 1426, 2045
EcoT22I	ATGCAT	1 cut(s)	2302
ErhI	CCWWGG	4 cut(s)	357, 1404, 1426, 2045
FalI	AAGNNNNNCTT	8 cut(s)	1509, 1541, 1599, 1631, 1737, 1769, 2007, 2039
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	2 cut(s)	499, 1243
FblI	GTMKAC	3 cut(s)	371, 452, 1152
Fnu4HI	GCNGC	7 cut(s)	56, 702, 1392, 1689, 2104, 2202, 2232
FokI	GGATG	4 cut(s)	70, 866, 2287, 2330
Fsp4HI	GCNGC	7 cut(s)	56, 702, 1392, 1689, 2104, 2202, 2232
FspBI	CTAG	5 cut(s)	170, 462, 537, 1353, 1700
GlaI	GCGC	2 cut(s)	399, 2107
GluI	GCNGC	7 cut(s)	56, 702, 1392, 1689, 2104, 2202, 2232
GsaI	CCCAGC	1 cut(s)	978
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	4 cut(s)	442, 1007, 2007, 2103
HapII	CCGG	2 cut(s)	2109, 2373
HhaI	GCGC	2 cut(s)	400, 2108
Hin6I	GCGC	2 cut(s)	398, 2106
HinP1I	GCGC	2 cut(s)	398, 2106
HincII	GTYRAC	1 cut(s)	1721
HindII	GTYRAC	1 cut(s)	1721
HinfI	GANTC	7 cut(s)	98, 120, 220, 1202, 1232, 1838, 2036
HpaII	CCGG	2 cut(s)	2109, 2373
HphI	GGTGA	3 cut(s)	11, 1960, 2344
Hpy166II	GTNNAC	8 cut(s)	372, 453, 1091, 1123, 1153, 1665, 1721, 2183
Hpy8I	GTNNAC	8 cut(s)	372, 453, 1091, 1123, 1153, 1665, 1721, 2183
HpyAV	CCTTC	5 cut(s)	397, 831, 1039, 1271, 2300
HpyCH4III	ACNGT	1 cut(s)	1725
HpyCH4IV	ACGT	2 cut(s)	1886, 2377
HpyF10VI	GCNNNNNNNGC	5 cut(s)	677, 1475, 1913, 2004, 2240
HpyF3I	CTNAG	9 cut(s)	23, 216, 330, 833, 1387, 1627, 1684, 2127, 2186
HpySE526I	ACGT	2 cut(s)	1886, 2377
HspAI	GCGC	2 cut(s)	398, 2106
Ksp22I	TGATCA	2 cut(s)	499, 1243
LguI	GCTCTTC	3 cut(s)	380, 774, 1923
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	5 cut(s)	67, 1378, 1700, 2188, 2243
LweI	GCATC	4 cut(s)	236, 798, 1204, 2309
MaeI	CTAG	5 cut(s)	170, 462, 537, 1353, 1700
MaeII	ACGT	2 cut(s)	1886, 2377
MaeIII	GTNAC	4 cut(s)	343, 649, 1771, 2027
MflI	RGATCY	2 cut(s)	1737, 2223
MhlI	GDGCHC	4 cut(s)	511, 762, 1125, 1480
MmeI	TCCRAC	3 cut(s)	1022, 1735, 1847
Mph1103I	ATGCAT	1 cut(s)	2302
MroXI	GAANNNNTTC	1 cut(s)	314
MslI	CAYNNNNRTG	3 cut(s)	825, 1559, 1973
MspA1I	CMGCKG	3 cut(s)	1391, 1597, 2201
MspCI	CTTAAG	1 cut(s)	1616
MspI	CCGG	2 cut(s)	2109, 2373
MspR9I	CCNGG	2 cut(s)	908, 2064
Mva1269I	GAATGC	2 cut(s)	330, 1071
MvaI	CCWGG	2 cut(s)	908, 2064
MvnI	CGCG	2 cut(s)	1515, 2106
MwoI	GCNNNNNNNGC	5 cut(s)	677, 1475, 1913, 2004, 2240
NcoI	CCATGG	2 cut(s)	357, 1426
NdeI	CATATG	1 cut(s)	723
NlaIV	GGNNCC	1 cut(s)	508
NmuCI	GTSAC	2 cut(s)	1771, 2027
NruI	TCGCGA	1 cut(s)	1515
NsiI	ATGCAT	1 cut(s)	2302
NspI	RCATGY	2 cut(s)	783, 985
NspV	TTCGAA	1 cut(s)	118
OliI	CACNNNNGTG	1 cut(s)	1973
PceI	AGGCCT	1 cut(s)	2007
PciSI	GCTCTTC	3 cut(s)	380, 774, 1923
PctI	GAATGC	2 cut(s)	330, 1071
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	7 cut(s)	98, 120, 220, 1202, 1232, 1838, 2036
PflFI	GACNNNGTC	1 cut(s)	2025
PflMI	CCANNNNNTGG	1 cut(s)	1597
PkrI	GCNGC	7 cut(s)	57, 703, 1393, 1690, 2105, 2203, 2233
PpuMI	RGGWCCY	1 cut(s)	946
PshAI	GACNNNNGTC	1 cut(s)	1367
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	2 cut(s)	906, 2062
PspFI	CCCAGC	1 cut(s)	974
PspGI	CCWGG	2 cut(s)	906, 2062
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	4 cut(s)	946, 960, 1345, 2101
PspPPI	RGGWCCY	1 cut(s)	946
PstI	CTGCAG	1 cut(s)	2206
PsuI	RGATCY	2 cut(s)	1737, 2223
PsyI	GACNNNGTC	1 cut(s)	2025
PvuII	CAGCTG	3 cut(s)	1391, 1597, 2201
RruI	TCGCGA	1 cut(s)	1515
RsaI	GTAC	7 cut(s)	278, 481, 565, 873, 980, 1625, 2197
RsaNI	GTAC	7 cut(s)	277, 480, 564, 872, 979, 1624, 2196
RseI	CAYNNNNRTG	3 cut(s)	825, 1559, 1973
SapI	GCTCTTC	3 cut(s)	380, 774, 1923
SatI	GCNGC	7 cut(s)	56, 702, 1392, 1689, 2104, 2202, 2232
Sau96I	GGNCC	4 cut(s)	946, 960, 1345, 2101
ScrFI	CCNGG	2 cut(s)	908, 2064
SduI	GDGCHC	4 cut(s)	511, 762, 1125, 1480
SfaNI	GCATC	4 cut(s)	236, 798, 1204, 2309
SfcI	CTRYAG	2 cut(s)	660, 2202
SfuI	TTCGAA	1 cut(s)	118
SinI	GGWCC	3 cut(s)	946, 960, 1345
SmiMI	CAYNNNNRTG	3 cut(s)	825, 1559, 1973
SmlI	CTYRAG	4 cut(s)	1094, 1285, 1616, 1754
SmoI	CTYRAG	4 cut(s)	1094, 1285, 1616, 1754
SpeI	ACTAGT	1 cut(s)	536
SseBI	AGGCCT	1 cut(s)	2007
SsiI	CCGC	6 cut(s)	647, 701, 777, 897, 1581, 2104
SspI	AATATT	2 cut(s)	1160, 1833
SspMI	CTAG	5 cut(s)	170, 462, 537, 1353, 1700
StuI	AGGCCT	1 cut(s)	2007
StyD4I	CCNGG	2 cut(s)	906, 2062
StyI	CCWWGG	4 cut(s)	357, 1404, 1426, 2045
TaaI	ACNGT	1 cut(s)	1725
TaiI	ACGT	2 cut(s)	1889, 2380
TaqI	TCGA	5 cut(s)	96, 118, 318, 992, 1533
TatI	WGTACW	4 cut(s)	276, 871, 1623, 2195
TauI	GCSGC	2 cut(s)	704, 2106
TfiI	GAWTC	7 cut(s)	98, 120, 220, 1202, 1232, 1838, 2036
TscAI	CASTG	2 cut(s)	739, 1480
TseFI	GTSAC	2 cut(s)	1771, 2027
TseI	GCWGC	5 cut(s)	55, 1391, 1688, 2201, 2231
Tsp45I	GTSAC	2 cut(s)	1771, 2027
TspGWI	ACGGA	2 cut(s)	322, 331
TspRI	CASTG	2 cut(s)	739, 1480
Tth111I	GACNNNGTC	1 cut(s)	2025
Van91I	CCANNNNNTGG	1 cut(s)	1597
Vha464I	CTTAAG	1 cut(s)	1616
VneI	GTGCAC	1 cut(s)	1121
VpaK11BI	GGWCC	3 cut(s)	946, 960, 1345
XapI	RAATTY	5 cut(s)	207, 816, 1567, 1870, 2132
XceI	RCATGY	2 cut(s)	783, 985
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 2169
XmiI	GTMKAC	3 cut(s)	371, 452, 1152
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	5 cut(s)	170, 462, 537, 1353, 1700
Zsp2I	ATGCAT	1 cut(s)	2302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.