Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G39530 |
| fragaria_vesca | FvH4_1g22400 FvH4_1g22550 |
| malus_domestica | MD01G1019600.v1.1 |
| prunus_persica | Prupe.6G172600_v2.0.a1 |
| pyrus_communis | pycom01g04910 |
| rosa_chinensis | RchiOBHm_Chr2g0116541 |
| rosa_laevigata | RLG00000018286 |
| rosa_multiflora | Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00127080 Rroxscaffold_2G00127100 |
| rosa_rugosa | Rorug02G0207400 Rorug02G0207500 |
| rosa_samantha | Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100 |
| rosa_wichuraiana | Rw2G020660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 210 |
| AccI | GTMKAC | 2 cut(s) | 14, 301 |
| AciI | CCGC | 1 cut(s) | 185 |
| AcuI | CTGAAG | 1 cut(s) | 65 |
| AfaI | GTAC | 1 cut(s) | 124 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 24 |
| AgsI | TTSAA | 2 cut(s) | 193, 277 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AoxI | GGCC | 1 cut(s) | 151 |
| AxyI | CCTNAGG | 1 cut(s) | 155 |
| BanI | GGYRCC | 1 cut(s) | 210 |
| BccI | CCATC | 1 cut(s) | 269 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 1 cut(s) | 105 |
| BisI | GCNGC | 1 cut(s) | 186 |
| BlsI | GCNGC | 1 cut(s) | 187 |
| BmiI | GGNNCC | 1 cut(s) | 212 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 64 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 24 |
| Bse21I | CCTNAGG | 1 cut(s) | 155 |
| BseDI | CCNNGG | 1 cut(s) | 64 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 24 |
| BshFI | GGCC | 1 cut(s) | 153 |
| BshNI | GGYRCC | 1 cut(s) | 210 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 24 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsnI | GGCC | 1 cut(s) | 153 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp19I | CCATGG | 1 cut(s) | 64 |
| BspACI | CCGC | 1 cut(s) | 185 |
| BspANI | GGCC | 1 cut(s) | 153 |
| BspLI | GGNNCC | 1 cut(s) | 212 |
| BspQI | GCTCTTC | 1 cut(s) | 23 |
| BspT107I | GGYRCC | 1 cut(s) | 210 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BssECI | CCNNGG | 1 cut(s) | 64 |
| BssNAI | GTATAC | 1 cut(s) | 15 |
| BssT1I | CCWWGG | 1 cut(s) | 64 |
| Bst1107I | GTATAC | 1 cut(s) | 15 |
| Bst6I | CTCTTC | 1 cut(s) | 23 |
| BstDEI | CTNAG | 2 cut(s) | 155, 215 |
| BstDSI | CCRYGG | 1 cut(s) | 64 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstZ17I | GTATAC | 1 cut(s) | 15 |
| Bsu36I | CCTNAGG | 1 cut(s) | 155 |
| BsuRI | GGCC | 1 cut(s) | 153 |
| BtgI | CCRYGG | 1 cut(s) | 64 |
| BtsIMutI | CAGTG | 1 cut(s) | 41 |
| Csp6I | GTAC | 1 cut(s) | 123 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 130, 165 |
| CviAII | CATG | 3 cut(s) | 23, 65, 77 |
| CviJI | RGCY | 4 cut(s) | 119, 153, 188, 247 |
| CviKI_1 | RGCY | 4 cut(s) | 119, 153, 188, 247 |
| CviQI | GTAC | 1 cut(s) | 123 |
| DdeI | CTNAG | 2 cut(s) | 155, 215 |
| Eam1104I | CTCTTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 64 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 1 cut(s) | 65 |
| Eco81I | CCTNAGG | 1 cut(s) | 155 |
| EcoT14I | CCWWGG | 1 cut(s) | 64 |
| ErhI | CCWWGG | 1 cut(s) | 64 |
| FaeI | CATG | 3 cut(s) | 26, 68, 80 |
| FaiI | YATR | 9 cut(s) | 11, 15, 24, 66, 78, 96, 162, 233, 282 |
| FatI | CATG | 3 cut(s) | 22, 64, 76 |
| FblI | GTMKAC | 2 cut(s) | 14, 301 |
| Fnu4HI | GCNGC | 1 cut(s) | 186 |
| Fsp4HI | GCNGC | 1 cut(s) | 186 |
| FspBI | CTAG | 1 cut(s) | 105 |
| GluI | GCNGC | 1 cut(s) | 186 |
| HaeIII | GGCC | 1 cut(s) | 153 |
| Hin1II | CATG | 3 cut(s) | 26, 68, 80 |
| Hpy166II | GTNNAC | 2 cut(s) | 15, 302 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 320 |
| Hpy8I | GTNNAC | 2 cut(s) | 15, 302 |
| HpyAV | CCTTC | 3 cut(s) | 40, 201, 267 |
| HpyF3I | CTNAG | 2 cut(s) | 155, 215 |
| Hsp92II | CATG | 3 cut(s) | 26, 68, 80 |
| LguI | GCTCTTC | 1 cut(s) | 23 |
| MaeI | CTAG | 1 cut(s) | 105 |
| MboII | GAAGA | 5 cut(s) | 40, 47, 186, 256, 277 |
| MluCI | AATT | 2 cut(s) | 128, 219 |
| MnlI | CCTC | 2 cut(s) | 128, 175 |
| MseI | TTAA | 1 cut(s) | 306 |
| NcoI | CCATGG | 1 cut(s) | 64 |
| NlaIII | CATG | 3 cut(s) | 26, 68, 80 |
| NlaIV | GGNNCC | 1 cut(s) | 212 |
| PciSI | GCTCTTC | 1 cut(s) | 23 |
| PkrI | GCNGC | 1 cut(s) | 187 |
| PspN4I | GGNNCC | 1 cut(s) | 212 |
| RsaI | GTAC | 1 cut(s) | 124 |
| RsaNI | GTAC | 1 cut(s) | 123 |
| SapI | GCTCTTC | 1 cut(s) | 23 |
| SaqAI | TTAA | 1 cut(s) | 306 |
| SatI | GCNGC | 1 cut(s) | 186 |
| SetI | ASST | 4 cut(s) | 51, 151, 161, 212 |
| SgeI | CNNG | 9 cut(s) | 31, 35, 77, 89, 112, 117, 128, 132, 158 |
| Sse9I | AATT | 2 cut(s) | 128, 219 |
| SsiI | CCGC | 1 cut(s) | 185 |
| SspMI | CTAG | 1 cut(s) | 105 |
| StyI | CCWWGG | 1 cut(s) | 64 |
| TaqI | TCGA | 1 cut(s) | 205 |
| TaqII | GACCGA | 1 cut(s) | 100 |
| TasI | AATT | 2 cut(s) | 128, 219 |
| TauI | GCSGC | 1 cut(s) | 188 |
| Tru1I | TTAA | 1 cut(s) | 306 |
| Tru9I | TTAA | 1 cut(s) | 306 |
| TscAI | CASTG | 1 cut(s) | 48 |
| TspRI | CASTG | 1 cut(s) | 48 |
| XmiI | GTMKAC | 2 cut(s) | 14, 301 |
| XspI | CTAG | 1 cut(s) | 105 |