Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004191.1

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Reverse (-)

125928 .. 126269

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004191.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgtattcgagaatccaaaccctccaaacccataggcttgcgttagtcaatctcttacaactaggcgtttcagacaaacccattttgttcttcaagagaatccatgctcagattctcgcatcgggctttcaagaagatgttttccttgccaatcttctactagactcgtacaagaaatctgggtctattgtttatgcacggaagctgtttgatagaatgcctgagaggaactccattacttggtcttccatggtttctatgtataccaagcatgggaagagcgaagaagcgctgaaggtgttttcggagttccataggagttctggcaaatccatgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

113

Amino Acids

12.96

Weight (kDa)

9.93

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	170
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	240, 273
AgsI	TTSAA	2 cut(s)	94, 131
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Aor51HI	AGCGCT	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	62, 161
BfoI	RGCGCY	1 cut(s)	293
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BsaJI	CCNNGG	2 cut(s)	249, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 273
BseDI	CCNNGG	2 cut(s)	249, 333
BseLI	CCNNNNNNNGG	2 cut(s)	240, 273
BseMII	CTCAG	2 cut(s)	122, 213
BslI	CCNNNNNNNGG	2 cut(s)	240, 273
BsmI	GAATGC	1 cut(s)	222
Bsp19I	CCATGG	2 cut(s)	249, 333
BspCNI	CTCAG	2 cut(s)	121, 214
BspQI	GCTCTTC	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	249, 333
BssNAI	GTATAC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	249, 333
Bst1107I	GTATAC	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	108, 222
BstDSI	CCRYGG	2 cut(s)	249, 333
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	237
BstZ17I	GTATAC	1 cut(s)	264
BtgI	CCRYGG	2 cut(s)	249, 333
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	4 cut(s)	104, 250, 272, 334
CviJI	RGCY	4 cut(s)	37, 126, 205, 339
CviKI_1	RGCY	4 cut(s)	37, 126, 205, 339
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	108, 222
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	249, 333
Eco47III	AGCGCT	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	249, 333
ErhI	CCWWGG	2 cut(s)	249, 333
FaeI	CATG	4 cut(s)	107, 253, 275, 337
FaiI	YATR	9 cut(s)	33, 105, 195, 251, 260, 264, 273, 315, 335
FatI	CATG	4 cut(s)	103, 249, 271, 333
FblI	GTMKAC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	62, 161
GlaI	GCGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	293
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	4 cut(s)	107, 253, 275, 337
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	4 cut(s)	12, 99, 112, 164
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	3 cut(s)	73, 111, 307
Hpy188III	TCNNGA	3 cut(s)	9, 94, 131
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	108, 222
Hsp92II	CATG	4 cut(s)	107, 253, 275, 337
HspAI	GCGC	1 cut(s)	290
LguI	GCTCTTC	1 cut(s)	272
LpnPI	CCDG	3 cut(s)	165, 234, 309
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	62, 161
MboII	GAAGA	6 cut(s)	82, 146, 146, 237, 289, 296
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	32, 219
Mva1269I	GAATGC	1 cut(s)	222
NcoI	CCATGG	2 cut(s)	249, 333
NlaIII	CATG	4 cut(s)	107, 253, 275, 337
PciSI	GCTCTTC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	12, 99, 112
PflMI	CCANNNNNTGG	1 cut(s)	240
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	158
SetI	ASST	2 cut(s)	207, 300
SfaNI	GCATC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	62, 161
StyI	CCWWGG	2 cut(s)	249, 333
TaqI	TCGA	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	12, 99, 112
TspGWI	ACGGA	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	263
XspI	CTAG	2 cut(s)	62, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.