Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G39530 |
| fragaria_vesca | FvH4_1g22400 FvH4_1g22550 |
| malus_domestica | MD01G1019600.v1.1 |
| prunus_persica | Prupe.6G172600_v2.0.a1 |
| pyrus_communis | pycom01g04910 |
| rosa_chinensis | RchiOBHm_Chr2g0116541 |
| rosa_laevigata | RLG00000018286 |
| rosa_multiflora | Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00127080 Rroxscaffold_2G00127100 |
| rosa_rugosa | Rorug02G0207400 Rorug02G0207500 |
| rosa_samantha | Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100 |
| rosa_wichuraiana | Rw2G020660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 249 |
| AcsI | RAATTY | 1 cut(s) | 140 |
| AcuI | CTGAAG | 1 cut(s) | 346 |
| AgsI | TTSAA | 2 cut(s) | 193, 221 |
| AjnI | CCWGG | 1 cut(s) | 386 |
| AluBI | AGCT | 2 cut(s) | 169, 224 |
| AluI | AGCT | 2 cut(s) | 169, 224 |
| AoxI | GGCC | 2 cut(s) | 206, 286 |
| ApoI | RAATTY | 1 cut(s) | 140 |
| AspS9I | GGNCC | 1 cut(s) | 23 |
| AvaII | GGWCC | 1 cut(s) | 23 |
| BbsI | GAAGAC | 1 cut(s) | 352 |
| BccI | CCATC | 2 cut(s) | 91, 275 |
| BceAI | ACGGC | 1 cut(s) | 193 |
| BciT130I | CCWGG | 1 cut(s) | 388 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BfaI | CTAG | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 1 cut(s) | 388 |
| Bme18I | GGWCC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 1 cut(s) | 23 |
| BmrFI | CCNGG | 1 cut(s) | 388 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BpiI | GAAGAC | 1 cut(s) | 352 |
| BpuEI | CTTGAG | 2 cut(s) | 223, 311 |
| Bse3DI | GCAATG | 1 cut(s) | 148 |
| BseBI | CCWGG | 1 cut(s) | 388 |
| BseGI | GGATG | 2 cut(s) | 102, 237 |
| BseMI | GCAATG | 1 cut(s) | 148 |
| BseMII | CTCAG | 1 cut(s) | 310 |
| BshFI | GGCC | 2 cut(s) | 208, 288 |
| BsmI | GAATGC | 1 cut(s) | 199 |
| BsnI | GGCC | 2 cut(s) | 208, 288 |
| Bsp143I | GATC | 2 cut(s) | 145, 265 |
| BspANI | GGCC | 2 cut(s) | 208, 288 |
| BspCNI | CTCAG | 1 cut(s) | 309 |
| BsrDI | GCAATG | 1 cut(s) | 148 |
| BssMI | GATC | 2 cut(s) | 145, 265 |
| Bst2UI | CCWGG | 1 cut(s) | 388 |
| BstDEI | CTNAG | 1 cut(s) | 296 |
| BstF5I | GGATG | 2 cut(s) | 102, 237 |
| BstKTI | GATC | 2 cut(s) | 148, 268 |
| BstMBI | GATC | 2 cut(s) | 145, 265 |
| BstNI | CCWGG | 1 cut(s) | 388 |
| BstSCI | CCNGG | 1 cut(s) | 386 |
| BstV2I | GAAGAC | 1 cut(s) | 352 |
| BsuRI | GGCC | 2 cut(s) | 208, 288 |
| BtsCI | GGATG | 2 cut(s) | 102, 237 |
| Cfr13I | GGNCC | 1 cut(s) | 23 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 209, 244 |
| CviAII | CATG | 1 cut(s) | 239 |
| CviJI | RGCY | 8 cut(s) | 101, 169, 208, 224, 237, 288, 386, 391 |
| CviKI_1 | RGCY | 8 cut(s) | 101, 169, 208, 224, 237, 288, 386, 391 |
| DdeI | CTNAG | 1 cut(s) | 296 |
| DpnI | GATC | 2 cut(s) | 147, 267 |
| DpnII | GATC | 2 cut(s) | 145, 265 |
| Eco32I | GATATC | 1 cut(s) | 17 |
| Eco47I | GGWCC | 1 cut(s) | 23 |
| Eco57I | CTGAAG | 1 cut(s) | 346 |
| EcoO109I | RGGNCCY | 1 cut(s) | 23 |
| EcoRII | CCWGG | 1 cut(s) | 386 |
| EcoRV | GATATC | 1 cut(s) | 17 |
| EcoT22I | ATGCAT | 1 cut(s) | 115 |
| FaeI | CATG | 1 cut(s) | 242 |
| FaiI | YATR | 3 cut(s) | 227, 240, 249 |
| FatI | CATG | 1 cut(s) | 238 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| FokI | GGATG | 2 cut(s) | 109, 244 |
| FspBI | CTAG | 1 cut(s) | 403 |
| HaeIII | GGCC | 2 cut(s) | 208, 288 |
| Hin1II | CATG | 1 cut(s) | 242 |
| HinfI | GANTC | 2 cut(s) | 51, 337 |
| Hpy166II | GTNNAC | 1 cut(s) | 302 |
| Hpy188I | TCNGA | 1 cut(s) | 215 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 107, 263, 364 |
| Hpy8I | GTNNAC | 1 cut(s) | 302 |
| HpyCH4V | TGCA | 2 cut(s) | 86, 113 |
| HpyF3I | CTNAG | 1 cut(s) | 296 |
| Hsp92II | CATG | 1 cut(s) | 242 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 2 cut(s) | 145, 265 |
| LpnPI | CCDG | 8 cut(s) | 39, 120, 145, 162, 168, 349, 373, 400 |
| LweI | GCATC | 1 cut(s) | 100 |
| MaeI | CTAG | 1 cut(s) | 403 |
| MaeIII | GTNAC | 1 cut(s) | 162 |
| MalI | GATC | 2 cut(s) | 147, 267 |
| MboI | GATC | 2 cut(s) | 145, 265 |
| MboII | GAAGA | 2 cut(s) | 352, 379 |
| MluCI | AATT | 1 cut(s) | 140 |
| MmeI | TCCRAC | 1 cut(s) | 145 |
| MnlI | CCTC | 5 cut(s) | 65, 87, 198, 268, 278 |
| Mph1103I | ATGCAT | 1 cut(s) | 115 |
| MseI | TTAA | 2 cut(s) | 137, 393 |
| MspR9I | CCNGG | 1 cut(s) | 388 |
| Mva1269I | GAATGC | 1 cut(s) | 199 |
| MvaI | CCWGG | 1 cut(s) | 388 |
| NdeII | GATC | 2 cut(s) | 145, 265 |
| NlaIII | CATG | 1 cut(s) | 242 |
| NsiI | ATGCAT | 1 cut(s) | 115 |
| PctI | GAATGC | 1 cut(s) | 199 |
| PfeI | GAWTC | 2 cut(s) | 51, 337 |
| PpuMI | RGGWCCY | 1 cut(s) | 23 |
| PsiI | TTATAA | 1 cut(s) | 249 |
| Psp5II | RGGWCCY | 1 cut(s) | 23 |
| Psp6I | CCWGG | 1 cut(s) | 386 |
| PspGI | CCWGG | 1 cut(s) | 386 |
| PspPI | GGNCC | 1 cut(s) | 23 |
| PspPPI | RGGWCCY | 1 cut(s) | 23 |
| SaqAI | TTAA | 2 cut(s) | 137, 393 |
| Sau3AI | GATC | 2 cut(s) | 145, 265 |
| Sau96I | GGNCC | 1 cut(s) | 23 |
| ScrFI | CCNGG | 1 cut(s) | 388 |
| SetI | ASST | 5 cut(s) | 25, 76, 171, 181, 226 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| SinI | GGWCC | 1 cut(s) | 23 |
| SmlI | CTYRAG | 2 cut(s) | 202, 326 |
| SmoI | CTYRAG | 2 cut(s) | 202, 326 |
| Sse9I | AATT | 1 cut(s) | 140 |
| SspMI | CTAG | 1 cut(s) | 403 |
| StyD4I | CCNGG | 1 cut(s) | 386 |
| TaqI | TCGA | 1 cut(s) | 262 |
| TasI | AATT | 1 cut(s) | 140 |
| TfiI | GAWTC | 2 cut(s) | 51, 337 |
| Tru1I | TTAA | 2 cut(s) | 137, 393 |
| Tru9I | TTAA | 2 cut(s) | 137, 393 |
| VpaK11BI | GGWCC | 1 cut(s) | 23 |
| XapI | RAATTY | 1 cut(s) | 140 |
| XspI | CTAG | 1 cut(s) | 403 |
| Zsp2I | ATGCAT | 1 cut(s) | 115 |