Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Forward (+)

4237818 .. 4240343

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGAGAAACTTTGCAATTCACCACTCTCTAATTAGGCGACGAAATTCTCACAAAACCCTCAACGCATCCACGTTAGCAGCATTACCAGTACCTCCTCCCCCTCCTACCTTTCCAATTCGAACCAAAAGGCGCGCTTTACTCGACCTCTTACAACCACGCGACCACTCCGACAAACCCATTTTCTACTACAACGCCATTCATGCCCAGATTCTCCTCTCCGGCTTTCGAGACGATGTTTTTCTTGCTAATCTTCTCTTGCACTCCTATGCCAAATCTGGCTCTTTTATTTACGCGCGGAAACTGTTTGATAAAATGCCTGAAAGGAACTCGGTTACTTGGTCTTCCATGGTTTCTATGTATACCAAGCATGGTAATTATGAACATGCATTGCTTATGTTTTCGGACTTCTGCAGGAATCCCGATGGGCACCCGAATGAGTATACGTTGGCCAGTGTTATCCGCGCTTGTACGCAGTTGGGAGGGGTTGATCAAGGTGCCCAAGTGCATGGTTTTGTTGTCAAGACTGGTTTTTATCAGGATGTTTATGTGGCTACTTCTTTACTCGATTTTTACGTCAAAAATGGCGATATAGATGAAGCTGACCTGATTTTTGAGGGTTTGAAAGTGAAAAGTGCAGTTACTTGGACCATAATGATAGCAGGGTATGCAAAATGTGGAAAAAGTGAAGTGTCTTTGAAATTGTTTAACCAAATGAGAGACACCGATGTTCTTCCTGACAAATATGTTCTGTCTAGTGTTCTGACTGCATGTTCTGCGCTCAAATTCATTGGAGGCGGCAGGCAAATCCATGCTTATGTGCTTAGAAGGGGAGCCGTAATGGACGTTTCAGTGGTTAATGTGCTTGTAGATTTCTATACCAAGTGCGGTGAAGTGGAGGCAGCAAAGAAGTTATTCGATATGATTGTAGTCAAGGACCTCATTTCGTGGACCACGATGATAGCCGGGTACATGCAGAATTCATTTGAGCGGGAGGCTGTTAAGTTATTTTCTGAAATGGCCAGATTGGGTTGGAAGCCGGATGGATTTGCATGCAGTAGCATTCTTACTTCGTGTGGTTCACTTGACGCTCTTAATCAGGGGAGAGAAGTCCATGCGTATGCTATTAGAGTCAATCTTGTTTATGAAGCTTATGTGAAGAATAGTTTGATTGATATGTATGCAAAATGTGATTCCCTTACTGATGCAAGAAAAGTATTTGATTCAATGACTGATCATAATGTGGTGTCTTACAATACGATGATCGAAGGATACTCAAGACAGGATAAGCTGTCTGAAGCGCTGCATCTTTTCAATGAGCTGAGACTTAGATCGTTCCAGCCGAGTCTCTTGACGTTCGTCAGCCTTCTTGGTATCTCAGCTGCTTTATTCACGTTGCAGTTGAGCAAGCAAATCCATGGTTTGATCACCAAATATGGGTACTGTTTGGATGTATTTTCTGGCAGTGGTCTGATAGATGTTTATTCGAAGTGCTCAGGTATTAAAGATGCCAGACTTGTATTCGATGAGATGTATGAGAAAGACATTGTAGTGTGGAATGCAATGTTTTGCGGATACGCACAACAGATGGAAAGTGAAGAGGCTCTTAGACTGTACACAGAATTACAATTATCGAGACAAAATCCTAATGAATTTACTTTTGCAGCCCTAATCTCAGCAGCCAGTAACCTGGCAAGTATGCAGCATGGCCAACAGTTCCATAACCAGCTCATTAAGATGGGTCTTGACAGTGATCCGTTCGTCACAAATGCCCTTGTGGATATGTATTCCAAGTGTGGAAGCATTGAAGAGGCTTGCAAAATTTTTAATTCAAAAGTTTGGAGTGACGTTGCCTGTTGGAATTCCATAATATCAACATATGCTCAACATGGAGAAGCAGAAGAAGCCCTTCTGATGTTTGCAAGAATGATGAAGGAGGGAATAAAACCCACCTATATCACATTTGTGGGTGTGTTATCAGCTTGTAGCCATGCAGGCCTTGTGGAAGATGGACTTCGCCACTTTGAATCAATGCCTCAGTTTGGGATTGATCCAGGGACTGAACATTATGCTTGCATAGTGACTCTCCTCGGTCGTGCTGGTAAATTATTTGAAGCTAAGGAATTCATTGAGAAAATGCCGGTAAAACCAGCAGCAATTGTATGGAGGAGCTTGCTCAGCGCGTGCACTGCTGCCGGTAATGTTGAATTGGGAACATATGCAGCAGAGATGGCAATTTGGAATGATCCAGTGGATAGTGGATCATATATCTTACTTTCAAATATTTATGCATCCAGAGGTATGTGGGCTGATGTCAAGGTGGTGAGGGAAAAAATGGACAATGATGGGGTGGTGAAAGAAACCGGCTGTAGTTGGGTTGAAGTGAATAATGATGTTCATACATTTGCTGCAAGAGATAGAACACATCGTGAGGCAGATCTAATTTTTTCAATTCTAGACAATTTGATTCTGCAGATTAAAGGTGTTGGTTATGTGCCTGATATTACGACACTTGTGATGAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

842

Amino Acids

94.07

Weight (kDa)

6.17

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	211 - 257	1.7e-09	PPR repeat family
PPR	PF01535	213 - 240	1.3e-06	PPR repeat
PPR_2	PF13041	312 - 358	1.3e-07	PPR repeat family
PPR	PF01535	314 - 343	7.3e-06	PPR repeat
PPR_2	PF13041	413 - 456	7.6e-11	PPR repeat family
PPR	PF01535	415 - 443	2.3e-06	PPR repeat
PPR_2	PF13041	513 - 559	2.2e-08	PPR repeat family
PPR_3	PF13812	614 - 661	1.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	615 - 662	3.2e-09	PPR repeat family
PPR	PF01535	618 - 647	3.7e-06	PPR repeat
E_motif	PF20431	733 - 793	2e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	426, 494
AccBSI	CCGCTC	1 cut(s)	988
AccI	GTMKAC	2 cut(s)	359, 440
AccII	CGCG	6 cut(s)	132, 159, 293, 295, 462, 2180
AciI	CCGC	6 cut(s)	295, 460, 795, 885, 988, 1569
AclWI	GGATC	4 cut(s)	1745, 2042, 2237, 2266
AcoI	YGGCCR	3 cut(s)	447, 1017, 1705
AcsI	RAATTY	7 cut(s)	43, 782, 976, 1649, 1818, 1858, 2120
AcuI	CTGAAG	1 cut(s)	1314
AdeI	CACNNNGTG	1 cut(s)	2426
AfaI	GTAC	5 cut(s)	90, 469, 968, 1439, 1613
AfeI	AGCGCT	1 cut(s)	1299
AfiI	CCNNNNNNNGG	2 cut(s)	1434, 2039
AjnI	CCWGG	2 cut(s)	1686, 2050
AleI	CACNNNNGTG	1 cut(s)	1961
AluBI	AGCT	9 cut(s)	599, 1148, 1288, 1318, 1379, 1726, 1979, 2114, 2169
AluI	AGCT	9 cut(s)	599, 1148, 1288, 1318, 1379, 1726, 1979, 2114, 2169
Alw21I	GWGCWC	2 cut(s)	1493, 2186
Alw26I	GTCTC	5 cut(s)	222, 711, 1315, 1349, 1627
Alw44I	GTGCAC	1 cut(s)	2182
AlwI	GGATC	4 cut(s)	1745, 2042, 2237, 2266
AlwNI	CAGNNNCTG	1 cut(s)	2057
Aor51HI	AGCGCT	1 cut(s)	1299
AoxI	GGCC	4 cut(s)	447, 1017, 1705, 1993
ApaLI	GTGCAC	1 cut(s)	2182
ApoI	RAATTY	7 cut(s)	43, 782, 976, 1649, 1818, 1858, 2120
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
Asp700I	GAANNNNTTC	2 cut(s)	911, 1905
AspLEI	GCGC	7 cut(s)	132, 134, 295, 464, 778, 1300, 2180
AspS9I	GGNCC	3 cut(s)	645, 934, 948
AsuC2I	CCSGG	1 cut(s)	964
AsuHPI	GGTGA	5 cut(s)	11, 899, 1417, 2332, 2362
AsuII	TTCGAA	2 cut(s)	118, 1484
AvaII	GGWCC	3 cut(s)	645, 934, 948
BaeGI	GKGCMC	3 cut(s)	429, 499, 2186
BalI	TGGCCA	3 cut(s)	449, 1019, 1707
BanI	GGYRCC	2 cut(s)	426, 494
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	1493, 2186
BccI	CCATC	7 cut(s)	416, 1034, 1579, 1729, 2000, 2221, 2336
BceAI	ACGGC	1 cut(s)	818
BciT130I	CCWGG	2 cut(s)	1688, 2052
BciVI	GTATCC	2 cut(s)	1262, 1565
BclI	TGATCA	3 cut(s)	487, 1231, 1422
BcnI	CCSGG	1 cut(s)	964
BcoDI	GTCTC	5 cut(s)	222, 711, 1315, 1349, 1627
BfaI	CTAG	2 cut(s)	753, 2453
BfmI	CTRYAG	3 cut(s)	409, 2365, 2468
BfoI	RGCGCY	1 cut(s)	1301
BfuI	GTATCC	2 cut(s)	1262, 1565
BglI	GCCNNNNNGGC	1 cut(s)	1992
BglII	AGATCT	1 cut(s)	2434
BlpI	GCTNAGC	1 cut(s)	2174
Bme1390I	CCNGG	3 cut(s)	964, 1688, 2052
Bme18I	GGWCC	3 cut(s)	645, 934, 948
BmgT120I	GGNCC	3 cut(s)	645, 934, 948
BmiI	GGNNCC	3 cut(s)	428, 496, 832
BmrFI	CCNGG	3 cut(s)	964, 1688, 2052
BmsI	GCATC	5 cut(s)	74, 1192, 1312, 1495, 2297
BoxI	GACNNNNGTC	1 cut(s)	1355
BpiI	GAAGAC	1 cut(s)	333
Bpu10I	CCTNAGC	2 cut(s)	1492, 2115
Bpu1102I	GCTNAGC	1 cut(s)	2174
Bpu14I	TTCGAA	2 cut(s)	118, 1484
BpuEI	CTTGAG	1 cut(s)	1258
BpuMI	CCSGG	1 cut(s)	964
BsaJI	CCNNGG	4 cut(s)	345, 1414, 2051, 2086
Bsc4I	CCNNNNNNNGG	2 cut(s)	1434, 2039
Bse118I	RCCGGY	3 cut(s)	2137, 2192, 2360
Bse1I	ACTGG	5 cut(s)	86, 450, 529, 1680, 2246
Bse3DI	GCAATG	2 cut(s)	386, 1566
BseBI	CCWGG	2 cut(s)	1688, 2052
BseDI	CCNNGG	4 cut(s)	345, 1414, 2051, 2086
BseGI	GGATG	5 cut(s)	65, 544, 1045, 1453, 2288
BseLI	CCNNNNNNNGG	2 cut(s)	1434, 2039
BseMI	GCAATG	2 cut(s)	386, 1566
BseMII	CTCAG	6 cut(s)	1310, 1389, 1506, 1686, 2048, 2188
BseNI	ACTGG	5 cut(s)	86, 450, 529, 1680, 2246
BsePI	GCGCGC	1 cut(s)	130
BseRI	GAGGAG	4 cut(s)	84, 203, 2075, 2179
BseSI	GKGCMC	3 cut(s)	429, 499, 2186
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	6 cut(s)	132, 159, 293, 295, 462, 2180
Bsh1285I	CGRYCG	1 cut(s)	2092
BshFI	GGCC	4 cut(s)	449, 1019, 1707, 1995
BshNI	GGYRCC	2 cut(s)	426, 494
BsiEI	CGRYCG	1 cut(s)	2092
BsiHKAI	GWGCWC	2 cut(s)	1493, 2186
BsiSI	CCGG	6 cut(s)	219, 963, 1037, 2138, 2193, 2361
BslFI	GGGAC	1 cut(s)	2068
BslI	CCNNNNNNNGG	2 cut(s)	1434, 2039
BsmAI	GTCTC	5 cut(s)	222, 711, 1315, 1349, 1627
BsmBI	CGTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	2068
BsmI	GAATGC	2 cut(s)	1059, 1561
BsnI	GGCC	4 cut(s)	449, 1019, 1707, 1995
Bsp119I	TTCGAA	2 cut(s)	118, 1484
Bsp1286I	GDGCHC	4 cut(s)	429, 499, 1493, 2186
Bsp1407I	TGTACA	1 cut(s)	1611
Bsp1720I	GCTNAGC	1 cut(s)	2174
Bsp19I	CCATGG	2 cut(s)	345, 1414
BspACI	CCGC	6 cut(s)	295, 460, 795, 885, 988, 1569
BspANI	GGCC	4 cut(s)	449, 1019, 1707, 1995
BspCNI	CTCAG	6 cut(s)	1311, 1388, 1505, 1685, 2047, 2187
BspFNI	CGCG	6 cut(s)	132, 159, 293, 295, 462, 2180
BspLI	GGNNCC	3 cut(s)	428, 496, 832
BspMAI	CTGCAG	2 cut(s)	413, 2472
BspPI	GGATC	4 cut(s)	1745, 2042, 2237, 2266
BspT104I	TTCGAA	2 cut(s)	118, 1484
BspT107I	GGYRCC	2 cut(s)	426, 494
BsrBI	CCGCTC	1 cut(s)	988
BsrDI	GCAATG	2 cut(s)	386, 1566
BsrFI	RCCGGY	3 cut(s)	2137, 2192, 2360
BsrGI	TGTACA	1 cut(s)	1611
BsrI	ACTGG	5 cut(s)	86, 450, 529, 1680, 2246
BssAI	RCCGGY	3 cut(s)	2137, 2192, 2360
BssECI	CCNNGG	4 cut(s)	345, 1414, 2051, 2086
BssHII	GCGCGC	1 cut(s)	130
BssNAI	GTATAC	2 cut(s)	360, 441
BssT1I	CCWWGG	2 cut(s)	345, 1414
Bst1107I	GTATAC	2 cut(s)	360, 441
Bst2UI	CCWGG	2 cut(s)	1688, 2052
Bst4CI	ACNGT	5 cut(s)	303, 1442, 1611, 1713, 1748
Bst6I	CTCTTC	2 cut(s)	1590, 1800
BstAPI	GCANNNNNTGC	2 cut(s)	665, 773
BstAUI	TGTACA	1 cut(s)	1611
BstBI	TTCGAA	2 cut(s)	118, 1484
BstC8I	GCNNGC	9 cut(s)	132, 800, 1051, 1406, 1813, 1993, 2071, 2171, 2182
BstDSI	CCRYGG	2 cut(s)	345, 1414
BstF5I	GGATG	5 cut(s)	65, 544, 1045, 1453, 2288
BstFNI	CGCG	6 cut(s)	132, 159, 293, 295, 462, 2180
BstH2I	RGCGCY	1 cut(s)	1301
BstHHI	GCGC	7 cut(s)	132, 134, 295, 464, 778, 1300, 2180
BstMAI	GTCTC	5 cut(s)	222, 711, 1315, 1349, 1627
BstMCI	CGRYCG	1 cut(s)	2092
BstMWI	GCNNNNNNNGC	8 cut(s)	200, 665, 773, 1901, 1992, 2175, 2186, 2228
BstNI	CCWGG	2 cut(s)	1688, 2052
BstNSI	RCATGY	4 cut(s)	386, 771, 973, 1053
BstPAI	GACNNNNGTC	1 cut(s)	1355
BstSCI	CCNGG	3 cut(s)	962, 1686, 2050
BstSFI	CTRYAG	3 cut(s)	409, 2365, 2468
BstSLI	GKGCMC	3 cut(s)	429, 499, 2186
BstUI	CGCG	6 cut(s)	132, 159, 293, 295, 462, 2180
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	2434
BstXI	CCANNNNNNTGG	2 cut(s)	506, 1687
BstYI	RGATCY	1 cut(s)	2434
BstZ17I	GTATAC	2 cut(s)	360, 441
BsuI	GTATCC	2 cut(s)	1262, 1565
BsuRI	GGCC	4 cut(s)	449, 1019, 1707, 1995
BtgI	CCRYGG	2 cut(s)	345, 1414
BtsCI	GGATG	5 cut(s)	65, 544, 1045, 1453, 2288
BtsI	GCAGTG	2 cut(s)	1468, 2184
BtsIMutI	CAGTG	6 cut(s)	457, 855, 1468, 1753, 2184, 2253
Cac8I	GCNNGC	9 cut(s)	132, 800, 1051, 1406, 1813, 1993, 2071, 2171, 2182
CaiI	CAGNNNCTG	1 cut(s)	2057
CfoI	GCGC	7 cut(s)	132, 134, 295, 464, 778, 1300, 2180
Cfr10I	RCCGGY	3 cut(s)	2137, 2192, 2360
Cfr13I	GGNCC	3 cut(s)	645, 934, 948
CseI	GACGC	1 cut(s)	1094
Csp6I	GTAC	5 cut(s)	89, 468, 967, 1438, 1612
CviQI	GTAC	5 cut(s)	89, 468, 967, 1438, 1612
DraIII	CACNNNGTG	1 cut(s)	2426
EaeI	YGGCCR	3 cut(s)	447, 1017, 1705
Eam1104I	CTCTTC	2 cut(s)	1590, 1800
EarI	CTCTTC	2 cut(s)	1590, 1800
Eco130I	CCWWGG	2 cut(s)	345, 1414
Eco147I	AGGCCT	1 cut(s)	1995
Eco47I	GGWCC	3 cut(s)	645, 934, 948
Eco47III	AGCGCT	1 cut(s)	1299
Eco57I	CTGAAG	1 cut(s)	1314
EcoO109I	RGGNCCY	1 cut(s)	934
EcoRI	GAATTC	3 cut(s)	976, 1858, 2120
EcoRII	CCWGG	2 cut(s)	1686, 2050
EcoT14I	CCWWGG	2 cut(s)	345, 1414
EcoT22I	ATGCAT	2 cut(s)	388, 2290
ErhI	CCWWGG	2 cut(s)	345, 1414
Esp3I	CGTCTC	1 cut(s)	222
FalI	AAGNNNNNCTT	8 cut(s)	118, 150, 1587, 1619, 1890, 1922, 1995, 2027
FaqI	GGGAC	1 cut(s)	2068
FauI	CCCGC	1 cut(s)	981
FauNDI	CATATG	2 cut(s)	1876, 2215
FbaI	TGATCA	3 cut(s)	487, 1231, 1422
FblI	GTMKAC	2 cut(s)	359, 440
FokI	GGATG	5 cut(s)	52, 551, 1052, 1460, 2275
FspBI	CTAG	2 cut(s)	753, 2453
GlaI	GCGC	7 cut(s)	131, 133, 294, 463, 777, 1299, 2179
HaeII	RGCGCY	1 cut(s)	1301
HaeIII	GGCC	4 cut(s)	449, 1019, 1707, 1995
HapII	CCGG	6 cut(s)	219, 963, 1037, 2138, 2193, 2361
HgaI	GACGC	1 cut(s)	1094
HhaI	GCGC	7 cut(s)	132, 134, 295, 464, 778, 1300, 2180
Hin6I	GCGC	7 cut(s)	130, 132, 293, 462, 776, 1298, 2178
HinP1I	GCGC	7 cut(s)	130, 132, 293, 462, 776, 1298, 2178
HindIII	AAGCTT	1 cut(s)	1146
HinfI	GANTC	9 cut(s)	208, 415, 1128, 1190, 1220, 1342, 2024, 2080, 2464
HpaII	CCGG	6 cut(s)	219, 963, 1037, 2138, 2193, 2361
HphI	GGTGA	5 cut(s)	11, 899, 1417, 2332, 2362
Hpy166II	GTNNAC	6 cut(s)	360, 441, 948, 1079, 1614, 2184
Hpy188I	TCNGA	7 cut(s)	169, 403, 762, 1012, 1294, 1470, 1911
Hpy8I	GTNNAC	6 cut(s)	360, 441, 948, 1079, 1614, 2184
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	5 cut(s)	819, 1259, 1373, 1916, 1924
HpyCH4III	ACNGT	5 cut(s)	303, 1442, 1611, 1713, 1748
HpyCH4IV	ACGT	7 cut(s)	71, 443, 573, 843, 1352, 1391, 1845
HpyF10VI	GCNNNNNNNGC	8 cut(s)	200, 665, 773, 1901, 1992, 2175, 2186, 2228
HpySE526I	ACGT	7 cut(s)	71, 443, 573, 843, 1352, 1391, 1845
HspAI	GCGC	7 cut(s)	130, 132, 293, 462, 776, 1298, 2178
Ksp22I	TGATCA	3 cut(s)	487, 1231, 1422
LmnI	GCTCC	2 cut(s)	830, 2166
LweI	GCATC	5 cut(s)	74, 1192, 1312, 1495, 2297
MaeI	CTAG	2 cut(s)	753, 2453
MaeII	ACGT	7 cut(s)	71, 443, 573, 843, 1352, 1391, 1845
MaeIII	GTNAC	6 cut(s)	331, 637, 1682, 1759, 1841, 2077
MbiI	CCGCTC	1 cut(s)	988
MboII	GAAGA	8 cut(s)	242, 333, 722, 1168, 1607, 1817, 1910, 2015
MfeI	CAATTG	1 cut(s)	2154
MflI	RGATCY	1 cut(s)	2434
MhlI	GDGCHC	4 cut(s)	429, 499, 1493, 2186
MlsI	TGGCCA	3 cut(s)	449, 1019, 1707
MluNI	TGGCCA	3 cut(s)	449, 1019, 1707
MlyI	GAGTC	3 cut(s)	1137, 1351, 2074
MmeI	TCCRAC	3 cut(s)	192, 1010, 1835
Mox20I	TGGCCA	3 cut(s)	449, 1019, 1707
Mph1103I	ATGCAT	2 cut(s)	388, 2290
MroXI	GAANNNNTTC	2 cut(s)	911, 1905
MscI	TGGCCA	3 cut(s)	449, 1019, 1707
MseI	TTAA	8 cut(s)	705, 855, 999, 1092, 1500, 1731, 1824, 2475
MslI	CAYNNNNRTG	7 cut(s)	264, 432, 813, 1116, 1547, 1733, 1961
Msp20I	TGGCCA	3 cut(s)	449, 1019, 1707
MspA1I	CMGCKG	1 cut(s)	1379
MspI	CCGG	6 cut(s)	219, 963, 1037, 2138, 2193, 2361
MspR9I	CCNGG	3 cut(s)	964, 1688, 2052
MunI	CAATTG	1 cut(s)	2154
Mva1269I	GAATGC	2 cut(s)	1059, 1561
MvaI	CCWGG	2 cut(s)	1688, 2052
MvnI	CGCG	6 cut(s)	132, 159, 293, 295, 462, 2180
MwoI	GCNNNNNNNGC	8 cut(s)	200, 665, 773, 1901, 1992, 2175, 2186, 2228
NciI	CCSGG	1 cut(s)	964
NcoI	CCATGG	2 cut(s)	345, 1414
NdeI	CATATG	2 cut(s)	1876, 2215
NlaIV	GGNNCC	3 cut(s)	428, 496, 832
NmeAIII	GCCGAG	1 cut(s)	1365
NmuCI	GTSAC	3 cut(s)	1759, 1841, 2077
NsiI	ATGCAT	2 cut(s)	388, 2290
NspI	RCATGY	4 cut(s)	386, 771, 973, 1053
NspV	TTCGAA	2 cut(s)	118, 1484
OliI	CACNNNNGTG	1 cut(s)	1961
PaeI	GCATGC	1 cut(s)	1053
PauI	GCGCGC	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	1995
PcsI	WCGNNNNNNNCGW	3 cut(s)	570, 950, 1337
PctI	GAATGC	2 cut(s)	1059, 1561
PdmI	GAANNNNTTC	2 cut(s)	911, 1905
PfeI	GAWTC	6 cut(s)	208, 415, 1190, 1220, 2024, 2464
PleI	GAGTC	3 cut(s)	1136, 1350, 2074
PpsI	GAGTC	3 cut(s)	1136, 1350, 2074
PpuMI	RGGWCCY	1 cut(s)	934
PshAI	GACNNNNGTC	1 cut(s)	1355
Psp5II	RGGWCCY	1 cut(s)	934
Psp6I	CCWGG	2 cut(s)	1686, 2050
PspGI	CCWGG	2 cut(s)	1686, 2050
PspN4I	GGNNCC	3 cut(s)	428, 496, 832
PspPI	GGNCC	3 cut(s)	645, 934, 948
PspPPI	RGGWCCY	1 cut(s)	934
PstI	CTGCAG	2 cut(s)	413, 2472
PstNI	CAGNNNCTG	1 cut(s)	2057
PsuI	RGATCY	1 cut(s)	2434
PteI	GCGCGC	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	1379
RsaI	GTAC	5 cut(s)	90, 469, 968, 1439, 1613
RsaNI	GTAC	5 cut(s)	89, 468, 967, 1438, 1612
RseI	CAYNNNNRTG	7 cut(s)	264, 432, 813, 1116, 1547, 1733, 1961
SaqAI	TTAA	8 cut(s)	705, 855, 999, 1092, 1500, 1731, 1824, 2475
Sau96I	GGNCC	3 cut(s)	645, 934, 948
SchI	GAGTC	3 cut(s)	1137, 1351, 2074
ScrFI	CCNGG	3 cut(s)	964, 1688, 2052
SduI	GDGCHC	4 cut(s)	429, 499, 1493, 2186
SfaNI	GCATC	5 cut(s)	74, 1192, 1312, 1495, 2297
SfcI	CTRYAG	3 cut(s)	409, 2365, 2468
SfuI	TTCGAA	2 cut(s)	118, 1484
SinI	GGWCC	3 cut(s)	645, 934, 948
SmiMI	CAYNNNNRTG	7 cut(s)	264, 432, 813, 1116, 1547, 1733, 1961
SmlI	CTYRAG	1 cut(s)	1273
SmoI	CTYRAG	1 cut(s)	1273
SphI	GCATGC	1 cut(s)	1053
SseBI	AGGCCT	1 cut(s)	1995
SsiI	CCGC	6 cut(s)	295, 460, 795, 885, 988, 1569
SspI	AATATT	1 cut(s)	2281
SspMI	CTAG	2 cut(s)	753, 2453
StuI	AGGCCT	1 cut(s)	1995
StyD4I	CCNGG	3 cut(s)	962, 1686, 2050
StyI	CCWWGG	2 cut(s)	345, 1414
TaaI	ACNGT	5 cut(s)	303, 1442, 1611, 1713, 1748
TaiI	ACGT	7 cut(s)	74, 446, 576, 846, 1355, 1394, 1848
TaqI	TCGA	9 cut(s)	118, 141, 226, 564, 915, 1263, 1484, 1521, 1631
TaqII	GACCGA	1 cut(s)	2078
TatI	WGTACW	1 cut(s)	1611
TauI	GCSGC	1 cut(s)	798
TfiI	GAWTC	6 cut(s)	208, 415, 1190, 1220, 2024, 2464
Tru1I	TTAA	8 cut(s)	705, 855, 999, 1092, 1500, 1731, 1824, 2475
Tru9I	TTAA	8 cut(s)	705, 855, 999, 1092, 1500, 1731, 1824, 2475
TscAI	CASTG	6 cut(s)	457, 855, 1468, 1753, 2191, 2253
TseFI	GTSAC	3 cut(s)	1759, 1841, 2077
Tsp45I	GTSAC	3 cut(s)	1759, 1841, 2077
TspGWI	ACGGA	1 cut(s)	1743
TspRI	CASTG	6 cut(s)	457, 855, 1468, 1753, 2191, 2253
VneI	GTGCAC	1 cut(s)	2182
VpaK11BI	GGWCC	3 cut(s)	645, 934, 948
XapI	RAATTY	7 cut(s)	43, 782, 976, 1649, 1818, 1858, 2120
XbaI	TCTAGA	1 cut(s)	2452
XceI	RCATGY	4 cut(s)	386, 771, 973, 1053
XmiI	GTMKAC	2 cut(s)	359, 440
XmnI	GAANNNNTTC	2 cut(s)	911, 1905
XspI	CTAG	2 cut(s)	753, 2453
Zsp2I	ATGCAT	2 cut(s)	388, 2290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.