Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Forward (+)

29773517 .. 29774578

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG274000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGGCTTAAATTGGTCCAGCCTAGTATCTTGACATTTGTCAGTCTTCTTGGTGTCTCAGCTGCTTTATTGACCTTGGAATTAAGCAAGCAAATCCATGGGCTGACCACCAAGTACGGGTTATCTTTGGATATTTTTGCTGGCAGTGCTCTCATTGATGTTTATTCCAAGTGTTCATGTATTCGCGAAGCTAAACTTGTATTTGAGGAGATGAATGAAAAAGACATAGTAGTGTGGAATTCAATGTTCTGCGGATACGCCCAACAGCTGGAAAGTGAAGAGGCTCTTAAGTTGTACTCAGAACTACAATTATCAAGACAAAATCCTAATGAGTTTACTTTTGCTTCCCTAATCTCAGCAGCCAGCAACCTAGCAAGTATCCAACATGGTCAACAGTTCCATAGCCAGATCTTTAAAATTGGTCTTGAGAATGATCCTTTTGTCACAAATGCCCTTGTGGATATGTATTCCAAGTGTGGAAGCATTACAGAGGCTCGCAAAATATTTGATTCCAAAACTTTGAAAGATGTTGCCTGTTGGAATTCCATTATCTCAACGTATGCACATCATGGAGAAGCAGAAAAAGCTCTTCTGATGTTTGAAAAAATGATGAATGAGGGGATAAAACCCAACTATATCACCTTTGTGGGGGTGCTATCAGCTTGTAGCCATGCAGGCCTTGTGGAAGATGGACTTGGTCACTTTGAATCAATGCCTTGGTTTGGAATCGAACCAGGGATAGAACATTATTCTTGCATAGTTTCTCTCTTGGGCCGCGCCGGTAAATTATCTGAAGCTAAGGAATTTATTGAGAAAATGCCAATGAAACCACCAGCAATTATATGGAGGAGTTTACTCAGTTCATGTACAGCTGCAGGTAATGTTGAATTGGGGATCTACGCAGCAGAGATGGCAATTTTGAGTGATCCAATGGATAGTGGATCGTATATCTTACTTTCAAATATGTATGCATCCGAAGGTATGTGGGATGATGTCAAGAGAGTGAGGAAAAAAATGGAGTATAATGGTGTAGTGAAAGAAACCGGACGTAGTTGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

353

Amino Acids

39.23

Weight (kDa)

5.58

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 120	1.1e-09	PPR repeat family
PPR_2	PF13041	175 - 223	1.1e-10	PPR repeat family
PPR_3	PF13812	176 - 222	4.8e-06	Pentatricopeptide repeat domain
PPR	PF01535	179 - 208	2.1e-06	PPR repeat
E_motif	PF20431	294 - 352	1.2e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccII	CGCG	2 cut(s)	186, 777
AciI	CCGC	2 cut(s)	252, 775
AclWI	GGATC	4 cut(s)	428, 902, 920, 949
AcsI	RAATTY	3 cut(s)	238, 541, 803
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	3 cut(s)	116, 296, 868
AfiI	CCNNNNNNNGG	4 cut(s)	117, 268, 648, 722
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	6 cut(s)	243, 523, 602, 707, 887, 960
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	678, 710
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	7 cut(s)	62, 191, 268, 587, 662, 797, 872
AluI	AGCT	7 cut(s)	62, 191, 268, 587, 662, 797, 872
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	4 cut(s)	428, 902, 920, 949
AoxI	GGCC	2 cut(s)	676, 772
ApeKI	GCWGC	4 cut(s)	62, 359, 872, 902
ApoI	RAATTY	3 cut(s)	238, 541, 803
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	2 cut(s)	16, 772
AsuHPI	GGTGA	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	4 cut(s)	49, 371, 859, 914
BccI	CCATC	2 cut(s)	683, 904
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	2 cut(s)	248, 389
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	24, 371
BfmI	CTRYAG	1 cut(s)	873
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	866
BfuI	GTATCC	2 cut(s)	248, 389
BglI	GCCNNNNNGGC	1 cut(s)	675
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	5 cut(s)	63, 360, 775, 873, 903
BlsI	GCNGC	5 cut(s)	64, 361, 776, 874, 904
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	16, 772
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	1 cut(s)	980
BoxI	GACNNNNGTC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	446
BsaJI	CCNNGG	4 cut(s)	75, 97, 716, 734
BsaWI	WCCGGW	1 cut(s)	1043
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 268, 648, 722
Bse118I	RCCGGY	1 cut(s)	779
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	4 cut(s)	75, 97, 716, 734
BseGI	GGATG	2 cut(s)	971, 994
BseLI	CCNNNNNNNGG	4 cut(s)	117, 268, 648, 722
BseMII	CTCAG	4 cut(s)	72, 312, 369, 871
BseRI	GAGGAG	2 cut(s)	221, 862
BseXI	GCAGC	4 cut(s)	49, 371, 859, 914
Bsh1236I	CGCG	2 cut(s)	186, 777
BshFI	GGCC	2 cut(s)	678, 774
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	780, 1044
BslI	CCNNNNNNNGG	4 cut(s)	117, 268, 648, 722
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	678, 774
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	866
Bsp143I	GATC	5 cut(s)	408, 433, 894, 925, 941
Bsp19I	CCATGG	1 cut(s)	97
Bsp68I	TCGCGA	1 cut(s)	186
BspACI	CCGC	2 cut(s)	252, 775
BspANI	GGCC	2 cut(s)	678, 774
BspCNI	CTCAG	4 cut(s)	71, 311, 368, 870
BspFNI	CGCG	2 cut(s)	186, 777
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	1 cut(s)	866
BspPI	GGATC	4 cut(s)	428, 902, 920, 949
BspQI	GCTCTTC	1 cut(s)	594
BspTI	CTTAAG	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	779
BsrGI	TGTACA	1 cut(s)	866
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	4 cut(s)	75, 97, 716, 734
BssMI	GATC	5 cut(s)	408, 433, 894, 925, 941
BssT1I	CCWWGG	3 cut(s)	75, 97, 716
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	273, 594
BstAFI	CTTAAG	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	866
BstC8I	GCNNGC	5 cut(s)	89, 142, 364, 496, 676
BstDEI	CTNAG	5 cut(s)	58, 298, 355, 798, 857
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	971, 994
BstFNI	CGCG	2 cut(s)	186, 777
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	5 cut(s)	411, 436, 897, 928, 944
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	408, 433, 894, 925, 941
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 584, 675, 911
BstNI	CCWGG	1 cut(s)	735
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	1 cut(s)	873
BstUI	CGCG	2 cut(s)	186, 777
BstV1I	GCAGC	4 cut(s)	49, 371, 859, 914
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	408, 894
BstYI	RGATCY	2 cut(s)	408, 894
BsuI	GTATCC	2 cut(s)	248, 389
BsuRI	GGCC	2 cut(s)	678, 774
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	971, 994
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
BtuMI	TCGCGA	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	866
Cac8I	GCNNGC	5 cut(s)	89, 142, 364, 496, 676
CfoI	GCGC	1 cut(s)	779
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	2 cut(s)	16, 772
Csp6I	GTAC	3 cut(s)	115, 295, 867
CviAII	CATG	6 cut(s)	98, 177, 386, 569, 671, 864
CviQI	GTAC	3 cut(s)	115, 295, 867
DdeI	CTNAG	5 cut(s)	58, 298, 355, 798, 857
DpnI	GATC	5 cut(s)	410, 435, 896, 927, 943
DpnII	GATC	5 cut(s)	408, 433, 894, 925, 941
DraI	TTTAAA	1 cut(s)	415
Eam1104I	CTCTTC	2 cut(s)	273, 594
EarI	CTCTTC	2 cut(s)	273, 594
Eco130I	CCWWGG	3 cut(s)	75, 97, 716
Eco147I	AGGCCT	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	813
EcoRI	GAATTC	2 cut(s)	238, 541
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	3 cut(s)	75, 97, 716
EcoT22I	ATGCAT	1 cut(s)	973
ErhI	CCWWGG	3 cut(s)	75, 97, 716
FaeI	CATG	6 cut(s)	101, 180, 389, 572, 674, 867
FalI	AAGNNNNNCTT	6 cut(s)	180, 212, 270, 302, 678, 710
FatI	CATG	6 cut(s)	97, 176, 385, 568, 670, 863
Fnu4HI	GCNGC	5 cut(s)	63, 360, 775, 873, 903
FokI	GGATG	2 cut(s)	958, 1001
Fsp4HI	GCNGC	5 cut(s)	63, 360, 775, 873, 903
FspBI	CTAG	2 cut(s)	24, 371
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	5 cut(s)	63, 360, 775, 873, 903
HaeIII	GGCC	2 cut(s)	678, 774
HapII	CCGG	2 cut(s)	780, 1044
HhaI	GCGC	1 cut(s)	779
Hin1II	CATG	6 cut(s)	101, 180, 389, 572, 674, 867
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	3 cut(s)	509, 707, 726
HpaII	CCGG	2 cut(s)	780, 1044
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	3 cut(s)	336, 392, 854
Hpy188I	TCNGA	4 cut(s)	301, 594, 793, 976
Hpy188III	TCNNGA	5 cut(s)	31, 185, 315, 425, 997
Hpy8I	GTNNAC	3 cut(s)	336, 392, 854
HpyAV	CCTTC	1 cut(s)	971
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	557, 1048
HpyCH4V	TGCA	5 cut(s)	563, 674, 756, 875, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 584, 675, 911
HpyF3I	CTNAG	5 cut(s)	58, 298, 355, 798, 857
HpySE526I	ACGT	2 cut(s)	557, 1048
Hsp92II	CATG	6 cut(s)	101, 180, 389, 572, 674, 867
HspAI	GCGC	1 cut(s)	777
Kzo9I	GATC	5 cut(s)	408, 433, 894, 925, 941
LguI	GCTCTTC	1 cut(s)	594
Lsp1109I	GCAGC	4 cut(s)	49, 371, 859, 914
LweI	GCATC	1 cut(s)	980
MaeI	CTAG	2 cut(s)	24, 371
MaeII	ACGT	2 cut(s)	557, 1048
MaeIII	GTNAC	2 cut(s)	442, 698
MalI	GATC	5 cut(s)	410, 435, 896, 927, 943
MboI	GATC	5 cut(s)	408, 433, 894, 925, 941
MboII	GAAGA	4 cut(s)	38, 290, 581, 698
MflI	RGATCY	2 cut(s)	408, 894
MhlI	GDGCHC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	406, 518
MnlI	CCTC	6 cut(s)	199, 274, 484, 610, 840, 999
Mph1103I	ATGCAT	1 cut(s)	973
MseI	TTAA	4 cut(s)	9, 83, 288, 414
MslI	CAYNNNNRTG	2 cut(s)	230, 644
MspA1I	CMGCKG	3 cut(s)	62, 268, 872
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	2 cut(s)	780, 1044
MspR9I	CCNGG	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	2 cut(s)	186, 777
MwoI	GCNNNNNNNGC	4 cut(s)	146, 584, 675, 911
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	5 cut(s)	408, 433, 894, 925, 941
NlaIII	CATG	6 cut(s)	101, 180, 389, 572, 674, 867
NmuCI	GTSAC	2 cut(s)	442, 698
NruI	TCGCGA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	973
OliI	CACNNNNGTG	1 cut(s)	644
PceI	AGGCCT	1 cut(s)	678
PciSI	GCTCTTC	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	509, 707, 726
PflFI	GACNNNGTC	1 cut(s)	696
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	64, 361, 776, 874, 904
PshAI	GACNNNNGTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspPI	GGNCC	2 cut(s)	16, 772
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	2 cut(s)	408, 894
PsyI	GACNNNGTC	1 cut(s)	696
PvuII	CAGCTG	3 cut(s)	62, 268, 872
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	3 cut(s)	116, 296, 868
RsaNI	GTAC	3 cut(s)	115, 295, 867
RseI	CAYNNNNRTG	2 cut(s)	230, 644
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	4 cut(s)	9, 83, 288, 414
SatI	GCNGC	5 cut(s)	63, 360, 775, 873, 903
Sau3AI	GATC	5 cut(s)	408, 433, 894, 925, 941
Sau96I	GGNCC	2 cut(s)	16, 772
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	980
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	2 cut(s)	230, 644
SmlI	CTYRAG	2 cut(s)	287, 425
SmoI	CTYRAG	2 cut(s)	287, 425
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	2 cut(s)	252, 775
SspI	AATATT	1 cut(s)	504
SspMI	CTAG	2 cut(s)	24, 371
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	3 cut(s)	75, 97, 716
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	2 cut(s)	560, 1051
TaqI	TCGA	1 cut(s)	729
TatI	WGTACW	2 cut(s)	294, 866
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	3 cut(s)	509, 707, 726
Tru1I	TTAA	4 cut(s)	9, 83, 288, 414
Tru9I	TTAA	4 cut(s)	9, 83, 288, 414
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	442, 698
TseI	GCWGC	4 cut(s)	62, 359, 872, 902
Tsp45I	GTSAC	2 cut(s)	442, 698
TspDTI	ATGAA	6 cut(s)	165, 227, 231, 626, 839, 852
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	696
Van91I	CCANNNNNTGG	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	3 cut(s)	238, 541, 803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	840
XspI	CTAG	2 cut(s)	24, 371
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.