Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Forward (+)

28203308 .. 28205753

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G020660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGTCTTCGAGAATCCAAACCCTCCAAACCCATAGGCTTGCGTTAGTCAATCTCTTACAACTAGGCGTTTCAGACAAACCCATTTTGTTCTTCAAGAGAATCCATGCTCAGATTCTCGCATCGGGCTTTCAAGAAGATGTTTTCCTTGCCAATCTTCTACTAGACTCGTACAAGAAATCTGGGTCTATTGTTTATGCACGGAAGCTGTTTGATAGAATGCCTGAGAGGAACTCCATTACTTGGTCTTCCATGGTTTCTATGTATACCAAGCATGGGAAGAGCGAAGAAGCGCTGAAGGTGTTTTCGGAGTTCCATAGGAGTTCTGATGGGAGGCCGAATGAGTATACCTTACCTAGTGCTATTCGGGCTTGTACGCAATTTGGAGGGGTTGATCAAGGTGCCCAAGTGCATTGTTTTGTTGTTAAGACTGGTTTTGATCTGGAAGTCTTTGTGGGTACTTCATTGATTGATTTTTATGTAAAAATGGGGGATATAGAAGAGGCGAGATTGATTTTTGATGGTTTAAAAGTTAAAAGTGCGGTTACTTGGACTATAGTTATAGCAGGGTATGCAAAAAGTGGAAGAAGTGAAGCGGCTTTGAAGTTGTTTTATCATATGAAAGACACTGATGTTCTTCCTGATAAATATGTGCTCTCTGCTCTTCTGACCGCATGTTCTGCCCTCAAGTTCATTGGAGGCGGCAAGCAAATTCATGCTCATGTGCTGAGAAGGGGAACAGAAATGGATGTTTCAGTGGTTAATGTACTAATAGATTTCTACACAAAGTGCGGTCAAGTCCAGGCAGGACATAAACTATTTGATAAGATGGTAGATAAGGACCTTATTTCATGGACCACAATGATAGCAGGGTACATGCAAAACTCGATGCACATGGAGGCCGTTAAGCTATTTTCTGAAATGACCAGAATGGGTTGGAAGGCAGATGGATATGGGTGCAGTAGCATTCTTACTTCATGTGGTTCACTTGAGGCTCTGAAACATGGGAGAGAAGTGCACGCTTATACTATCAGGGTTGATCTTGTCTACGAATATTATGTGAAGAATAGTTTGATTGATATGTATGCAAAATGTGATTCCCTGACTGATGCAAGAAGAGTTTTTGATTCCATGACTGATCATAATGTGGTCTCTTACAATGCAATGATTGAAGGATACTCAAGGCAGGATAAGGTGGCTGAAGCTCTGGATCTTTTCAATCTTATGAGGCTTAAATTGGTCCAGCCTAGTATCTTGACATTTGTCAGTCTTCTTGGTGTCTCAGCTGCTTTATTGACCTTGGAATTAAGCAAGCAAATCCATGGGCTGACCACCAAGTACGGGTTATCTTTGGATATTTTTGCTGGCAGTGCTCTCATTGATGTTTATTCCAAGTGTTCATGTATTCGCGAAGCTAAACTTGTATTCGAGGAGATGAACGAAAAAGACATAGTAGTGTGGAATTCAATGTTCTGCGGATACGCCCAACAGCTGGAAAGTGAAGAGGCTCTTAAGTTGTACTCAGAACTACAATTATCAAGACAAAATCCTAATGAGTTTACTTTTGCTTCCCTAATCTCAGCAGCCAGCAACCTAGCAAGTATCCAACATGGTCAACAGTTCCATAGCCAGATCTTTAAAATTGGTCTTGAGAATGATCCTTTTGTCACAAATGCCCTTGTGGATATGTATTCCAAGTGTGGAAGCATTAAAGAGGCTCGCAAAATATTTGATTCCAAAACTTTGAAAGATGTTGCCTGTTGGAATTCCATTATCTCAACGTATGCACATCATGGAGAAGCAGAAAAAGCTCTTCTGAGGTTTGAAAAAATGATGAATGAGGGGATAAAACCCAACTATATCACCTTTGTGGGGGTGCTATCAGCTTGTAGCCATGCAGGCCTTGTGGAAGATGGACTTGGTCACTTTGAATCAATGCCTTGGTTTGGAATCGAAGCAGGGATAGAACATTATTCTTGCATAGAATTTATTGAGAAAATGCCAATGAAACCACCAGCAATTATATGGAGGAGTTTACTCAGTTCATGTACAGCTGCAGGTAATGTTGAATTGGGGATCTATGCAGCAGAGATGGCAATTTTGAGTGATCCAATGGATAGTGGATCGTATATCTTACTTTCAAATATGTATGCATCCCAAGGTATGTGGGATGATGTCAAGAGAGTGAGGAAAAAAATGGAGTATAATGGTGTGGTGAAAGAAACCGGACGTAGTTGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

746

Amino Acids

83.6

Weight (kDa)

6.51

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	79 - 106	4.2e-06	PPR repeat
PPR_2	PF13041	179 - 225	4.3e-10	PPR repeat family
PPR	PF01535	181 - 208	1.5e-06	PPR repeat
PPR_2	PF13041	280 - 326	3e-08	PPR repeat family
PPR	PF01535	282 - 311	7.5e-07	PPR repeat
PPR_2	PF13041	381 - 424	3.8e-11	PPR repeat family
PPR	PF01535	383 - 409	1.6e-06	PPR repeat
PPR_2	PF13041	481 - 527	3.1e-09	PPR repeat family
PPR_2	PF13041	582 - 630	3e-09	PPR repeat family
E_motif	PF20431	687 - 745	1e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2045
AccB1I	GGYRCC	1 cut(s)	398
AccB7I	CCANNNNNTGG	2 cut(s)	240, 1489
AccI	GTMKAC	3 cut(s)	263, 344, 1044
AccII	CGCG	1 cut(s)	1407
AciI	CCGC	6 cut(s)	539, 593, 669, 699, 789, 1473
AclWI	GGATC	5 cut(s)	1215, 1649, 2081, 2099, 2128
AcsI	RAATTY	4 cut(s)	708, 1459, 1762, 1982
AcuI	CTGAAG	2 cut(s)	314, 1218
AdeI	CACNNNGTG	1 cut(s)	786
AfaI	GTAC	8 cut(s)	170, 373, 457, 765, 872, 1337, 1517, 2047
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	6 cut(s)	240, 273, 1338, 1489, 1869, 1943
AflII	CTTAAG	1 cut(s)	1508
AjnI	CCWGG	1 cut(s)	798
AjuI	GAANNNNNNNTTGG	2 cut(s)	1899, 1931
AleI	CACNNNNGTG	1 cut(s)	1865
AluBI	AGCT	9 cut(s)	205, 907, 1202, 1283, 1412, 1489, 1808, 1883, 2051
AluI	AGCT	9 cut(s)	205, 907, 1202, 1283, 1412, 1489, 1808, 1883, 2051
Alw21I	GWGCWC	3 cut(s)	654, 1017, 1372
Alw26I	GTCTC	2 cut(s)	1153, 1282
Alw44I	GTGCAC	1 cut(s)	1013
AlwI	GGATC	5 cut(s)	1215, 1649, 2081, 2099, 2128
Aor51HI	AGCGCT	1 cut(s)	291
AoxI	GGCC	3 cut(s)	332, 897, 1897
ApaLI	GTGCAC	1 cut(s)	1013
ApeKI	GCWGC	4 cut(s)	1283, 1580, 2051, 2081
ApoI	RAATTY	4 cut(s)	708, 1459, 1762, 1982
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	3 cut(s)	838, 852, 1237
AsuHPI	GGTGA	2 cut(s)	1852, 2224
AvaII	GGWCC	3 cut(s)	838, 852, 1237
BaeGI	GKGCMC	2 cut(s)	403, 1017
BanI	GGYRCC	1 cut(s)	398
BbsI	GAAGAC	2 cut(s)	237, 1259
Bbv12I	GWGCWC	3 cut(s)	654, 1017, 1372
BbvI	GCAGC	4 cut(s)	1270, 1592, 2038, 2093
BccI	CCATC	6 cut(s)	320, 512, 820, 938, 1904, 2083
BceAI	ACGGC	1 cut(s)	884
BciT130I	CCWGG	1 cut(s)	800
BciVI	GTATCC	3 cut(s)	1166, 1469, 1610
BclI	TGATCA	2 cut(s)	391, 1135
BcoDI	GTCTC	2 cut(s)	1153, 1282
BfaI	CTAG	5 cut(s)	62, 161, 354, 1245, 1592
BfmI	CTRYAG	2 cut(s)	552, 2052
BfoI	RGCGCY	1 cut(s)	293
BfrI	CTTAAG	1 cut(s)	1508
BfuAI	ACCTGC	1 cut(s)	2045
BfuI	GTATCC	3 cut(s)	1166, 1469, 1610
BglI	GCCNNNNNGGC	1 cut(s)	1896
BglII	AGATCT	1 cut(s)	1629
BisI	GCNGC	6 cut(s)	594, 700, 1284, 1581, 2052, 2082
BlsI	GCNGC	6 cut(s)	595, 701, 1285, 1582, 2053, 2083
Bme1390I	CCNGG	1 cut(s)	800
Bme18I	GGWCC	3 cut(s)	838, 852, 1237
BmgT120I	GGNCC	3 cut(s)	838, 852, 1237
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	800
BmsI	GCATC	4 cut(s)	128, 876, 1096, 2159
BoxI	GACNNNNGTC	1 cut(s)	1259
BpiI	GAAGAC	2 cut(s)	237, 1259
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpuEI	CTTGAG	4 cut(s)	668, 1007, 1162, 1667
BsaI	GGTCTC	1 cut(s)	1153
BsaJI	CCNNGG	5 cut(s)	249, 1296, 1318, 1937, 2155
BsaWI	WCCGGW	1 cut(s)	2222
Bsc4I	CCNNNNNNNGG	6 cut(s)	240, 273, 1338, 1489, 1869, 1943
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	1167
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	5 cut(s)	249, 1296, 1318, 1937, 2155
BseGI	GGATG	3 cut(s)	751, 2150, 2173
BseLI	CCNNNNNNNGG	6 cut(s)	240, 273, 1338, 1489, 1869, 1943
BseMI	GCAATG	1 cut(s)	1167
BseMII	CTCAG	8 cut(s)	122, 213, 716, 1293, 1533, 1590, 1805, 2050
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	2 cut(s)	1442, 2041
BseSI	GKGCMC	2 cut(s)	403, 1017
BseXI	GCAGC	4 cut(s)	1270, 1592, 2038, 2093
BsgI	GTGCAG	1 cut(s)	976
Bsh1236I	CGCG	1 cut(s)	1407
BshFI	GGCC	3 cut(s)	334, 899, 1899
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	3 cut(s)	654, 1017, 1372
BsiSI	CCGG	1 cut(s)	2223
BslI	CCNNNNNNNGG	6 cut(s)	240, 273, 1338, 1489, 1869, 1943
BsmAI	GTCTC	2 cut(s)	1153, 1282
BsmI	GAATGC	2 cut(s)	222, 963
BsnI	GGCC	3 cut(s)	334, 899, 1899
Bso31I	GGTCTC	1 cut(s)	1153
Bsp1286I	GDGCHC	4 cut(s)	403, 654, 1017, 1372
Bsp1407I	TGTACA	1 cut(s)	2045
Bsp19I	CCATGG	2 cut(s)	249, 1318
Bsp68I	TCGCGA	1 cut(s)	1407
BspACI	CCGC	6 cut(s)	539, 593, 669, 699, 789, 1473
BspANI	GGCC	3 cut(s)	334, 899, 1899
BspCNI	CTCAG	8 cut(s)	121, 214, 717, 1292, 1532, 1589, 1806, 2049
BspFNI	CGCG	1 cut(s)	1407
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	2056
BspMI	ACCTGC	1 cut(s)	2045
BspPI	GGATC	5 cut(s)	1215, 1649, 2081, 2099, 2128
BspQI	GCTCTTC	3 cut(s)	272, 666, 1815
BspT107I	GGYRCC	1 cut(s)	398
BspTI	CTTAAG	1 cut(s)	1508
BspTNI	GGTCTC	1 cut(s)	1153
BsrDI	GCAATG	1 cut(s)	1167
BsrGI	TGTACA	1 cut(s)	2045
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	5 cut(s)	249, 1296, 1318, 1937, 2155
BssNAI	GTATAC	2 cut(s)	264, 345
BssT1I	CCWWGG	5 cut(s)	249, 1296, 1318, 1937, 2155
Bst1107I	GTATAC	2 cut(s)	264, 345
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	1 cut(s)	1617
Bst6I	CTCTTC	6 cut(s)	272, 492, 666, 1108, 1494, 1815
BstAFI	CTTAAG	1 cut(s)	1508
BstAPI	GCANNNNNTGC	2 cut(s)	569, 677
BstAUI	TGTACA	1 cut(s)	2045
BstC8I	GCNNGC	8 cut(s)	39, 704, 1017, 1310, 1363, 1585, 1717, 1897
BstDEI	CTNAG	8 cut(s)	108, 222, 725, 1279, 1519, 1576, 1814, 2036
BstDSI	CCRYGG	2 cut(s)	249, 1318
BstF5I	GGATG	3 cut(s)	751, 2150, 2173
BstFNI	CGCG	1 cut(s)	1407
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstMAI	GTCTC	2 cut(s)	1153, 1282
BstMWI	GCNNNNNNNGC	7 cut(s)	365, 569, 677, 1367, 1805, 1896, 2090
BstNI	CCWGG	1 cut(s)	800
BstNSI	RCATGY	2 cut(s)	675, 877
BstPAI	GACNNNNGTC	1 cut(s)	1259
BstSCI	CCNGG	1 cut(s)	798
BstSFI	CTRYAG	2 cut(s)	552, 2052
BstSLI	GKGCMC	2 cut(s)	403, 1017
BstUI	CGCG	1 cut(s)	1407
BstV1I	GCAGC	4 cut(s)	1270, 1592, 2038, 2093
BstV2I	GAAGAC	2 cut(s)	237, 1259
BstX2I	RGATCY	3 cut(s)	1207, 1629, 2073
BstYI	RGATCY	3 cut(s)	1207, 1629, 2073
BstZ17I	GTATAC	2 cut(s)	264, 345
BsuI	GTATCC	3 cut(s)	1166, 1469, 1610
BsuRI	GGCC	3 cut(s)	334, 899, 1899
BtgI	CCRYGG	2 cut(s)	249, 1318
BtsCI	GGATG	3 cut(s)	751, 2150, 2173
BtsI	GCAGTG	1 cut(s)	1372
BtsIMutI	CAGTG	3 cut(s)	624, 759, 1372
BtuMI	TCGCGA	1 cut(s)	1407
BveI	ACCTGC	1 cut(s)	2045
Cac8I	GCNNGC	8 cut(s)	39, 704, 1017, 1310, 1363, 1585, 1717, 1897
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	3 cut(s)	838, 852, 1237
Csp6I	GTAC	8 cut(s)	169, 372, 456, 764, 871, 1336, 1516, 2046
CspCI	CAANNNNNGTGG	2 cut(s)	2144, 2179
CviQI	GTAC	8 cut(s)	169, 372, 456, 764, 871, 1336, 1516, 2046
DdeI	CTNAG	8 cut(s)	108, 222, 725, 1279, 1519, 1576, 1814, 2036
DraI	TTTAAA	2 cut(s)	525, 1636
DraIII	CACNNNGTG	1 cut(s)	786
Eam1104I	CTCTTC	6 cut(s)	272, 492, 666, 1108, 1494, 1815
EarI	CTCTTC	6 cut(s)	272, 492, 666, 1108, 1494, 1815
Eco130I	CCWWGG	5 cut(s)	249, 1296, 1318, 1937, 2155
Eco147I	AGGCCT	1 cut(s)	1899
Eco31I	GGTCTC	1 cut(s)	1153
Eco47I	GGWCC	3 cut(s)	838, 852, 1237
Eco47III	AGCGCT	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	314, 1218
EcoO109I	RGGNCCY	1 cut(s)	838
EcoRI	GAATTC	2 cut(s)	1459, 1762
EcoRII	CCWGG	1 cut(s)	798
EcoT14I	CCWWGG	5 cut(s)	249, 1296, 1318, 1937, 2155
EcoT22I	ATGCAT	1 cut(s)	2152
ErhI	CCWWGG	5 cut(s)	249, 1296, 1318, 1937, 2155
FalI	AAGNNNNNCTT	6 cut(s)	1401, 1433, 1491, 1523, 1899, 1931
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	2 cut(s)	391, 1135
FblI	GTMKAC	3 cut(s)	263, 344, 1044
Fnu4HI	GCNGC	6 cut(s)	594, 700, 1284, 1581, 2052, 2082
FokI	GGATG	3 cut(s)	758, 2137, 2180
Fsp4HI	GCNGC	6 cut(s)	594, 700, 1284, 1581, 2052, 2082
FspBI	CTAG	5 cut(s)	62, 161, 354, 1245, 1592
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	6 cut(s)	594, 700, 1284, 1581, 2052, 2082
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	3 cut(s)	334, 899, 1899
HapII	CCGG	1 cut(s)	2223
HhaI	GCGC	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	1613
HindII	GTYRAC	1 cut(s)	1613
HinfI	GANTC	9 cut(s)	12, 99, 112, 164, 1094, 1124, 1730, 1928, 1947
HpaII	CCGG	1 cut(s)	2223
HphI	GGTGA	2 cut(s)	1852, 2224
Hpy166II	GTNNAC	8 cut(s)	264, 345, 983, 1015, 1045, 1557, 1613, 2033
Hpy188I	TCNGA	9 cut(s)	73, 111, 307, 325, 666, 916, 996, 1522, 1815
Hpy8I	GTNNAC	8 cut(s)	264, 345, 983, 1015, 1045, 1557, 1613, 2033
HpyAV	CCTTC	4 cut(s)	289, 723, 931, 1163
HpyCH4III	ACNGT	1 cut(s)	1617
HpyCH4IV	ACGT	2 cut(s)	1778, 2227
HpyF10VI	GCNNNNNNNGC	7 cut(s)	365, 569, 677, 1367, 1805, 1896, 2090
HpyF3I	CTNAG	8 cut(s)	108, 222, 725, 1279, 1519, 1576, 1814, 2036
HpySE526I	ACGT	2 cut(s)	1778, 2227
HspAI	GCGC	1 cut(s)	290
Ksp22I	TGATCA	2 cut(s)	391, 1135
LguI	GCTCTTC	3 cut(s)	272, 666, 1815
Lsp1109I	GCAGC	4 cut(s)	1270, 1592, 2038, 2093
LweI	GCATC	4 cut(s)	128, 876, 1096, 2159
MaeI	CTAG	5 cut(s)	62, 161, 354, 1245, 1592
MaeII	ACGT	2 cut(s)	1778, 2227
MaeIII	GTNAC	3 cut(s)	541, 1663, 1919
MflI	RGATCY	3 cut(s)	1207, 1629, 2073
MhlI	GDGCHC	4 cut(s)	403, 654, 1017, 1372
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	3 cut(s)	914, 1627, 1739
Mph1103I	ATGCAT	1 cut(s)	2152
MslI	CAYNNNNRTG	3 cut(s)	717, 1451, 1865
MspA1I	CMGCKG	3 cut(s)	1283, 1489, 2051
MspCI	CTTAAG	1 cut(s)	1508
MspI	CCGG	1 cut(s)	2223
MspR9I	CCNGG	1 cut(s)	800
Mva1269I	GAATGC	2 cut(s)	222, 963
MvaI	CCWGG	1 cut(s)	800
MvnI	CGCG	1 cut(s)	1407
MwoI	GCNNNNNNNGC	7 cut(s)	365, 569, 677, 1367, 1805, 1896, 2090
NcoI	CCATGG	2 cut(s)	249, 1318
NdeI	CATATG	1 cut(s)	615
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	2 cut(s)	1663, 1919
NruI	TCGCGA	1 cut(s)	1407
NsiI	ATGCAT	1 cut(s)	2152
NspI	RCATGY	2 cut(s)	675, 877
OliI	CACNNNNGTG	1 cut(s)	1865
PceI	AGGCCT	1 cut(s)	1899
PciSI	GCTCTTC	3 cut(s)	272, 666, 1815
PctI	GAATGC	2 cut(s)	222, 963
PfeI	GAWTC	8 cut(s)	12, 99, 112, 1094, 1124, 1730, 1928, 1947
PflFI	GACNNNGTC	1 cut(s)	1917
PflMI	CCANNNNNTGG	2 cut(s)	240, 1489
PkrI	GCNGC	6 cut(s)	595, 701, 1285, 1582, 2053, 2083
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	838
PshAI	GACNNNNGTC	1 cut(s)	1259
Psp5II	RGGWCCY	1 cut(s)	838
Psp6I	CCWGG	1 cut(s)	798
PspGI	CCWGG	1 cut(s)	798
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	3 cut(s)	838, 852, 1237
PspPPI	RGGWCCY	1 cut(s)	838
PstI	CTGCAG	1 cut(s)	2056
PsuI	RGATCY	3 cut(s)	1207, 1629, 2073
PsyI	GACNNNGTC	1 cut(s)	1917
PvuII	CAGCTG	3 cut(s)	1283, 1489, 2051
RruI	TCGCGA	1 cut(s)	1407
RsaI	GTAC	8 cut(s)	170, 373, 457, 765, 872, 1337, 1517, 2047
RsaNI	GTAC	8 cut(s)	169, 372, 456, 764, 871, 1336, 1516, 2046
RseI	CAYNNNNRTG	3 cut(s)	717, 1451, 1865
SapI	GCTCTTC	3 cut(s)	272, 666, 1815
SatI	GCNGC	6 cut(s)	594, 700, 1284, 1581, 2052, 2082
Sau96I	GGNCC	3 cut(s)	838, 852, 1237
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	800
SduI	GDGCHC	4 cut(s)	403, 654, 1017, 1372
SfaNI	GCATC	4 cut(s)	128, 876, 1096, 2159
SfcI	CTRYAG	2 cut(s)	552, 2052
SinI	GGWCC	3 cut(s)	838, 852, 1237
SmiMI	CAYNNNNRTG	3 cut(s)	717, 1451, 1865
SmlI	CTYRAG	5 cut(s)	683, 986, 1177, 1508, 1646
SmoI	CTYRAG	5 cut(s)	683, 986, 1177, 1508, 1646
SseBI	AGGCCT	1 cut(s)	1899
SsiI	CCGC	6 cut(s)	539, 593, 669, 699, 789, 1473
SspI	AATATT	2 cut(s)	1052, 1725
SspMI	CTAG	5 cut(s)	62, 161, 354, 1245, 1592
StuI	AGGCCT	1 cut(s)	1899
StyD4I	CCNGG	1 cut(s)	798
StyI	CCWWGG	5 cut(s)	249, 1296, 1318, 1937, 2155
TaaI	ACNGT	1 cut(s)	1617
TaiI	ACGT	2 cut(s)	1781, 2230
TaqI	TCGA	4 cut(s)	8, 884, 1425, 1950
TatI	WGTACW	3 cut(s)	763, 1515, 2045
TauI	GCSGC	2 cut(s)	596, 702
TfiI	GAWTC	8 cut(s)	12, 99, 112, 1094, 1124, 1730, 1928, 1947
TscAI	CASTG	3 cut(s)	631, 759, 1372
TseFI	GTSAC	2 cut(s)	1663, 1919
TseI	GCWGC	4 cut(s)	1283, 1580, 2051, 2081
Tsp45I	GTSAC	2 cut(s)	1663, 1919
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	3 cut(s)	631, 759, 1372
Tth111I	GACNNNGTC	1 cut(s)	1917
Van91I	CCANNNNNTGG	2 cut(s)	240, 1489
Vha464I	CTTAAG	1 cut(s)	1508
VneI	GTGCAC	1 cut(s)	1013
VpaK11BI	GGWCC	3 cut(s)	838, 852, 1237
XapI	RAATTY	4 cut(s)	708, 1459, 1762, 1982
XceI	RCATGY	2 cut(s)	675, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2019
XmiI	GTMKAC	3 cut(s)	263, 344, 1044
XspI	CTAG	5 cut(s)	62, 161, 354, 1245, 1592
Zsp2I	ATGCAT	1 cut(s)	2152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.