Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Forward (+)

29604234 .. 29608120

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG270600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGTCTTCGAGAATCCAAACCCTCCAAACCCATAGGCTTGCGTTAGTCAATCTCTTACAAATAGGTGTTTCAGACAAACCCATTTTGTTCTTCAAGAGAATCCATGCTCAGATTCTCGCATCGGGCTTTCAAGAAGATGTTTTCCTTGCCAATCTTCTACTAGACTCGTACAAGAAATCTGGGTCTATTGTTTATGCACGGAAGCTGTTTGATAGAATGCCTGAGAGGAACTCCGTTACTTGGTCTTCCATGGTTTCTATGTATACCAAGCATGGGAAGAGCGAAGAAGCGCTGAAGGTGTTTTCGGAGTTCCATAGGAGTTCTGATGGGAGGCCGAATGAGTATACCTTACCTAGTGCTATTCGGGCTTGTACGCAATTTGGAGGGGTTGATCAAGGTGCCCAAGTGCATTGTTTTGTTGTTAAGACTGGTTTTGATCTGGAAGTCTTTGTGGGTACTTCTTTAATTGATTTTTATGTAAAAATGGGTGATATAGAAGAGGCGAGATTGATTTTTGATGGTTTAAAAGTTAAAAGTGCTGTTACTTGGACTATTGTTATAGCAGGGTATGCGAAAAGTGGAAGAAGTGAAGCGGCTTTGAAGTCGTTTTATCATATGAAAGACACTGATGTTCTTCCTGATAAATATGTGCTCTCTGCTCTTCTGACCGCATGTTCTGCCCTCAAGTTCATTGGAGGCGGCAAGCAAATTCATGCTCATGTGCTGAGAAGGGGAACAGAAATGGATGTTTCAGTGGTTAATGTACTAATAGATTTCTACACAAAGTGCGGTCAAGTCCAGGCAGGACATAAACTATTTGATAAGATGGTAGATAAGGACCTTATTTCATGGACCACAATGATAGCAGGGTACATGCAAAACTCGATGCACATGGAGGCCGTTAAGCTATTTTCTGAAATGACCAGAATGGGTTGGAAGGCAGATGGATATGGGTGCAGTAGCATTCTTACTTCATGTGGTTCACTTGAGGCTCTGAAACATGGGAGAGAAGTGCACGCTTATACTATCAGGGTTGATCTTGTCTACGAATATTATGTGAAGAATAGTTTGATTGATATGTATGCAAAATGTGATTCCCTGACTGATGCAAGAAGAGTTTTTGATTCCATGGCTGATCATAATGTGGTCTCTTACAATGCAATGATTGAAGGATACTCAAGGCAGGATAAGGTGGCTGAAGCTCTGGATCTTTTCAATCTTATGAGGCTTAAATTGGTCCAGCCTAGTATCTTGACATTTGTCAGTCTTCTTGGTGTCTCAGCTGCTTTATTGACCTTGGAATTAAGCAAGCAAATCCATGGGCTGACCACCAAGTACGGGTTATCTTTGGATATTTTTGCTGGCAGTGCTCTCATTGATGTTTATTCCAAGTGTTCATGTATTCGCGAAGCTAAACTTGTATTCGAGGAGATGAATGAAAAAGACATAGTTGTGTGGAATTCAATGTTCTGTGGATACGCCCAACAGCTGGAAAGTGAAGAGGCTCTTAAGTTGTACTCAGAACTACAATTATCAAGACAAAATCCTAATGAGTTTACTTTTGCTTCCCTAATCTCAGCAGCCAGCAACCTAGCAAGTATCCAACATGGTCAACAGTTCCATAGCCAAATCTTTAAAATTGGTCTTGAGAATGATCCTTTTGTCACAAATGCCCTTGTGGATATGTATTCCAAGTGTGGAAGCATTAAAGAGGCTCGCAAAATATTTGATTCCAAAACTTTGAAAGATGTTGCCTGTTGGAATTCCATTATCTCAACGTATGCACATCATGGAGAAGCAGAAAAAGCTCTTCTGATGTTTGAAAAAATGATGAATGAGGGGATAAAACCCAACTATATCACCTTTGTGGGGGTGCTATCAGCTTGTAGCCATGCAGGCCTTGTGGAAGATGGACTTGGTCACTTTGAATCAATGCCTTGGTTTGGAATCGAACCAGGGATAGAACATTATTCTTGCATAGTTTCTCTCTTGGGCCGCGCCGGTAAATTATCTGAAGCTAAGGAATTTATTGAGAAAATGCCAATGAAACCACCAGCAATGATATGGAGGAGTTTACTCAGTTCATGTACAGCTGCAGGTAATGTTGAATTGGGGATCTACGCAGCAGAGATGGCAATTTTGAGTGATCCAATGGATAGTGGATCGTATATCTTACTTTCAAATATGTATGCATCCGAAGGTATGTGGGATGATGTCAAGAGAGTGAGGAAAAAAATGGAGTATAATGGTGTAGTGAAAGAAACCGGACGTAGTTGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

760

Amino Acids

84.96

Weight (kDa)

6.51

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 124	4.8e-06	PPR repeat family
PPR	PF01535	79 - 106	2e-06	PPR repeat
PPR_2	PF13041	179 - 225	1.3e-08	PPR repeat family
PPR_2	PF13041	280 - 326	3e-08	PPR repeat family
PPR	PF01535	282 - 311	7.6e-07	PPR repeat
PPR_2	PF13041	381 - 424	3.9e-11	PPR repeat family
PPR	PF01535	383 - 409	1.7e-06	PPR repeat
PPR_2	PF13041	481 - 527	3.1e-09	PPR repeat family
PPR_2	PF13041	582 - 630	3e-10	PPR repeat family
PPR	PF01535	586 - 615	5.5e-06	PPR repeat
E_motif	PF20431	701 - 759	3.4e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2087
AccB1I	GGYRCC	1 cut(s)	398
AccB7I	CCANNNNNTGG	1 cut(s)	1489
AccI	GTMKAC	3 cut(s)	263, 344, 1044
AccII	CGCG	2 cut(s)	1407, 1998
AciI	CCGC	5 cut(s)	593, 669, 699, 789, 1996
AclWI	GGATC	5 cut(s)	1215, 1649, 2123, 2141, 2170
AcsI	RAATTY	4 cut(s)	708, 1459, 1762, 2024
AcuI	CTGAAG	3 cut(s)	314, 1218, 2034
AdeI	CACNNNGTG	1 cut(s)	786
AfaI	GTAC	8 cut(s)	170, 373, 457, 765, 872, 1337, 1517, 2089
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	6 cut(s)	240, 273, 1338, 1489, 1869, 1943
AflII	CTTAAG	1 cut(s)	1508
AjnI	CCWGG	2 cut(s)	798, 1954
AjuI	GAANNNNNNNTTGG	2 cut(s)	1899, 1931
AleI	CACNNNNGTG	1 cut(s)	1865
Alw21I	GWGCWC	3 cut(s)	654, 1017, 1372
Alw26I	GTCTC	2 cut(s)	1153, 1282
Alw44I	GTGCAC	1 cut(s)	1013
AlwI	GGATC	5 cut(s)	1215, 1649, 2123, 2141, 2170
Aor51HI	AGCGCT	1 cut(s)	291
AoxI	GGCC	4 cut(s)	332, 897, 1897, 1993
ApaLI	GTGCAC	1 cut(s)	1013
ApeKI	GCWGC	4 cut(s)	1283, 1580, 2093, 2123
ApoI	RAATTY	4 cut(s)	708, 1459, 1762, 2024
AspLEI	GCGC	2 cut(s)	292, 2000
AspS9I	GGNCC	4 cut(s)	838, 852, 1237, 1993
AsuHPI	GGTGA	2 cut(s)	500, 1852
AvaII	GGWCC	3 cut(s)	838, 852, 1237
BaeGI	GKGCMC	2 cut(s)	403, 1017
BanI	GGYRCC	1 cut(s)	398
BbsI	GAAGAC	2 cut(s)	237, 1259
Bbv12I	GWGCWC	3 cut(s)	654, 1017, 1372
BbvI	GCAGC	4 cut(s)	1270, 1592, 2080, 2135
BccI	CCATC	6 cut(s)	320, 512, 820, 938, 1904, 2125
BceAI	ACGGC	1 cut(s)	884
BciT130I	CCWGG	2 cut(s)	800, 1956
BciVI	GTATCC	3 cut(s)	1166, 1469, 1610
BclI	TGATCA	2 cut(s)	391, 1135
BcoDI	GTCTC	2 cut(s)	1153, 1282
BfaI	CTAG	4 cut(s)	161, 354, 1245, 1592
BfmI	CTRYAG	1 cut(s)	2094
BfoI	RGCGCY	1 cut(s)	293
BfrI	CTTAAG	1 cut(s)	1508
BfuAI	ACCTGC	1 cut(s)	2087
BfuI	GTATCC	3 cut(s)	1166, 1469, 1610
BglI	GCCNNNNNGGC	1 cut(s)	1896
BisI	GCNGC	7 cut(s)	594, 700, 1284, 1581, 1996, 2094, 2124
BlsI	GCNGC	7 cut(s)	595, 701, 1285, 1582, 1997, 2095, 2125
Bme1390I	CCNGG	2 cut(s)	800, 1956
Bme18I	GGWCC	3 cut(s)	838, 852, 1237
BmgT120I	GGNCC	4 cut(s)	838, 852, 1237, 1993
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	2 cut(s)	800, 1956
BmsI	GCATC	4 cut(s)	128, 876, 1096, 2201
BoxI	GACNNNNGTC	1 cut(s)	1259
BpiI	GAAGAC	2 cut(s)	237, 1259
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
Bpu10I	CCTNAGC	1 cut(s)	2019
BpuEI	CTTGAG	4 cut(s)	668, 1007, 1162, 1667
BsaI	GGTCTC	1 cut(s)	1153
BsaJI	CCNNGG	6 cut(s)	249, 1128, 1296, 1318, 1937, 1955
BsaWI	WCCGGW	1 cut(s)	2264
Bsc4I	CCNNNNNNNGG	6 cut(s)	240, 273, 1338, 1489, 1869, 1943
Bse118I	RCCGGY	1 cut(s)	2000
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	2 cut(s)	1167, 2064
BseBI	CCWGG	2 cut(s)	800, 1956
BseDI	CCNNGG	6 cut(s)	249, 1128, 1296, 1318, 1937, 1955
BseGI	GGATG	3 cut(s)	751, 2192, 2215
BseLI	CCNNNNNNNGG	6 cut(s)	240, 273, 1338, 1489, 1869, 1943
BseMI	GCAATG	2 cut(s)	1167, 2064
BseMII	CTCAG	7 cut(s)	122, 213, 716, 1293, 1533, 1590, 2092
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	2 cut(s)	1442, 2083
BseSI	GKGCMC	2 cut(s)	403, 1017
BseXI	GCAGC	4 cut(s)	1270, 1592, 2080, 2135
BsgI	GTGCAG	1 cut(s)	976
Bsh1236I	CGCG	2 cut(s)	1407, 1998
BshFI	GGCC	4 cut(s)	334, 899, 1899, 1995
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	3 cut(s)	654, 1017, 1372
BsiSI	CCGG	2 cut(s)	2001, 2265
BslI	CCNNNNNNNGG	6 cut(s)	240, 273, 1338, 1489, 1869, 1943
BsmAI	GTCTC	2 cut(s)	1153, 1282
BsmI	GAATGC	2 cut(s)	222, 963
BsnI	GGCC	4 cut(s)	334, 899, 1899, 1995
Bso31I	GGTCTC	1 cut(s)	1153
Bsp1286I	GDGCHC	4 cut(s)	403, 654, 1017, 1372
Bsp1407I	TGTACA	1 cut(s)	2087
Bsp143I	GATC	9 cut(s)	391, 436, 1036, 1135, 1207, 1654, 2115, 2146, 2162
Bsp19I	CCATGG	3 cut(s)	249, 1128, 1318
Bsp68I	TCGCGA	1 cut(s)	1407
BspACI	CCGC	5 cut(s)	593, 669, 699, 789, 1996
BspANI	GGCC	4 cut(s)	334, 899, 1899, 1995
BspCNI	CTCAG	7 cut(s)	121, 214, 717, 1292, 1532, 1589, 2091
BspFNI	CGCG	2 cut(s)	1407, 1998
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	2098
BspMI	ACCTGC	1 cut(s)	2087
BspPI	GGATC	5 cut(s)	1215, 1649, 2123, 2141, 2170
BspQI	GCTCTTC	3 cut(s)	272, 666, 1815
BspT107I	GGYRCC	1 cut(s)	398
BspTI	CTTAAG	1 cut(s)	1508
BspTNI	GGTCTC	1 cut(s)	1153
BsrDI	GCAATG	2 cut(s)	1167, 2064
BsrFI	RCCGGY	1 cut(s)	2000
BsrGI	TGTACA	1 cut(s)	2087
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	2000
BssECI	CCNNGG	6 cut(s)	249, 1128, 1296, 1318, 1937, 1955
BssMI	GATC	9 cut(s)	391, 436, 1036, 1135, 1207, 1654, 2115, 2146, 2162
BssNAI	GTATAC	2 cut(s)	264, 345
BssT1I	CCWWGG	5 cut(s)	249, 1128, 1296, 1318, 1937
Bst1107I	GTATAC	2 cut(s)	264, 345
Bst2UI	CCWGG	2 cut(s)	800, 1956
Bst4CI	ACNGT	1 cut(s)	1617
Bst6I	CTCTTC	6 cut(s)	272, 492, 666, 1108, 1494, 1815
BstAFI	CTTAAG	1 cut(s)	1508
BstAPI	GCANNNNNTGC	2 cut(s)	569, 677
BstAUI	TGTACA	1 cut(s)	2087
BstC8I	GCNNGC	8 cut(s)	39, 704, 1017, 1310, 1363, 1585, 1717, 1897
BstDEI	CTNAG	8 cut(s)	108, 222, 725, 1279, 1519, 1576, 2019, 2078
BstDSI	CCRYGG	3 cut(s)	249, 1128, 1318
BstF5I	GGATG	3 cut(s)	751, 2192, 2215
BstFNI	CGCG	2 cut(s)	1407, 1998
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	292, 2000
BstKTI	GATC	9 cut(s)	394, 439, 1039, 1138, 1210, 1657, 2118, 2149, 2165
BstMAI	GTCTC	2 cut(s)	1153, 1282
BstMBI	GATC	9 cut(s)	391, 436, 1036, 1135, 1207, 1654, 2115, 2146, 2162
BstMWI	GCNNNNNNNGC	7 cut(s)	365, 569, 677, 1367, 1805, 1896, 2132
BstNI	CCWGG	2 cut(s)	800, 1956
BstNSI	RCATGY	2 cut(s)	675, 877
BstPAI	GACNNNNGTC	1 cut(s)	1259
BstSCI	CCNGG	2 cut(s)	798, 1954
BstSFI	CTRYAG	1 cut(s)	2094
BstSLI	GKGCMC	2 cut(s)	403, 1017
BstUI	CGCG	2 cut(s)	1407, 1998
BstV1I	GCAGC	4 cut(s)	1270, 1592, 2080, 2135
BstV2I	GAAGAC	2 cut(s)	237, 1259
BstX2I	RGATCY	2 cut(s)	1207, 2115
BstYI	RGATCY	2 cut(s)	1207, 2115
BstZ17I	GTATAC	2 cut(s)	264, 345
BsuI	GTATCC	3 cut(s)	1166, 1469, 1610
BsuRI	GGCC	4 cut(s)	334, 899, 1899, 1995
BtgI	CCRYGG	3 cut(s)	249, 1128, 1318
BtsCI	GGATG	3 cut(s)	751, 2192, 2215
BtsI	GCAGTG	1 cut(s)	1372
BtsIMutI	CAGTG	3 cut(s)	624, 759, 1372
BtuMI	TCGCGA	1 cut(s)	1407
BveI	ACCTGC	1 cut(s)	2087
Cac8I	GCNNGC	8 cut(s)	39, 704, 1017, 1310, 1363, 1585, 1717, 1897
CfoI	GCGC	2 cut(s)	292, 2000
Cfr10I	RCCGGY	1 cut(s)	2000
Cfr13I	GGNCC	4 cut(s)	838, 852, 1237, 1993
Csp6I	GTAC	8 cut(s)	169, 372, 456, 764, 871, 1336, 1516, 2088
CviQI	GTAC	8 cut(s)	169, 372, 456, 764, 871, 1336, 1516, 2088
DdeI	CTNAG	8 cut(s)	108, 222, 725, 1279, 1519, 1576, 2019, 2078
DpnI	GATC	9 cut(s)	393, 438, 1038, 1137, 1209, 1656, 2117, 2148, 2164
DpnII	GATC	9 cut(s)	391, 436, 1036, 1135, 1207, 1654, 2115, 2146, 2162
DraI	TTTAAA	2 cut(s)	525, 1636
DraIII	CACNNNGTG	1 cut(s)	786
Eam1104I	CTCTTC	6 cut(s)	272, 492, 666, 1108, 1494, 1815
EarI	CTCTTC	6 cut(s)	272, 492, 666, 1108, 1494, 1815
Eco130I	CCWWGG	5 cut(s)	249, 1128, 1296, 1318, 1937
Eco147I	AGGCCT	1 cut(s)	1899
Eco31I	GGTCTC	1 cut(s)	1153
Eco47I	GGWCC	3 cut(s)	838, 852, 1237
Eco47III	AGCGCT	1 cut(s)	291
Eco57I	CTGAAG	3 cut(s)	314, 1218, 2034
EcoO109I	RGGNCCY	1 cut(s)	838
EcoRI	GAATTC	2 cut(s)	1459, 1762
EcoRII	CCWGG	2 cut(s)	798, 1954
EcoT14I	CCWWGG	5 cut(s)	249, 1128, 1296, 1318, 1937
EcoT22I	ATGCAT	1 cut(s)	2194
ErhI	CCWWGG	5 cut(s)	249, 1128, 1296, 1318, 1937
FalI	AAGNNNNNCTT	6 cut(s)	1401, 1433, 1491, 1523, 1899, 1931
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	2 cut(s)	391, 1135
FblI	GTMKAC	3 cut(s)	263, 344, 1044
Fnu4HI	GCNGC	7 cut(s)	594, 700, 1284, 1581, 1996, 2094, 2124
FokI	GGATG	3 cut(s)	758, 2179, 2222
Fsp4HI	GCNGC	7 cut(s)	594, 700, 1284, 1581, 1996, 2094, 2124
FspBI	CTAG	4 cut(s)	161, 354, 1245, 1592
GlaI	GCGC	2 cut(s)	291, 1999
GluI	GCNGC	7 cut(s)	594, 700, 1284, 1581, 1996, 2094, 2124
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	4 cut(s)	334, 899, 1899, 1995
HapII	CCGG	2 cut(s)	2001, 2265
HhaI	GCGC	2 cut(s)	292, 2000
Hin6I	GCGC	2 cut(s)	290, 1998
HinP1I	GCGC	2 cut(s)	290, 1998
HincII	GTYRAC	1 cut(s)	1613
HindII	GTYRAC	1 cut(s)	1613
HinfI	GANTC	9 cut(s)	12, 99, 112, 164, 1094, 1124, 1730, 1928, 1947
HpaII	CCGG	2 cut(s)	2001, 2265
HphI	GGTGA	2 cut(s)	500, 1852
Hpy166II	GTNNAC	8 cut(s)	264, 345, 983, 1015, 1045, 1557, 1613, 2075
Hpy8I	GTNNAC	8 cut(s)	264, 345, 983, 1015, 1045, 1557, 1613, 2075
HpyAV	CCTTC	5 cut(s)	289, 723, 931, 1163, 2192
HpyCH4III	ACNGT	1 cut(s)	1617
HpyCH4IV	ACGT	2 cut(s)	1778, 2269
HpyF10VI	GCNNNNNNNGC	7 cut(s)	365, 569, 677, 1367, 1805, 1896, 2132
HpyF3I	CTNAG	8 cut(s)	108, 222, 725, 1279, 1519, 1576, 2019, 2078
HpySE526I	ACGT	2 cut(s)	1778, 2269
HspAI	GCGC	2 cut(s)	290, 1998
Ksp22I	TGATCA	2 cut(s)	391, 1135
Kzo9I	GATC	9 cut(s)	391, 436, 1036, 1135, 1207, 1654, 2115, 2146, 2162
LguI	GCTCTTC	3 cut(s)	272, 666, 1815
Lsp1109I	GCAGC	4 cut(s)	1270, 1592, 2080, 2135
LweI	GCATC	4 cut(s)	128, 876, 1096, 2201
MaeI	CTAG	4 cut(s)	161, 354, 1245, 1592
MaeII	ACGT	2 cut(s)	1778, 2269
MaeIII	GTNAC	4 cut(s)	235, 541, 1663, 1919
MalI	GATC	9 cut(s)	393, 438, 1038, 1137, 1209, 1656, 2117, 2148, 2164
MboI	GATC	9 cut(s)	391, 436, 1036, 1135, 1207, 1654, 2115, 2146, 2162
MflI	RGATCY	2 cut(s)	1207, 2115
MhlI	GDGCHC	4 cut(s)	403, 654, 1017, 1372
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	3 cut(s)	914, 1627, 1739
Mph1103I	ATGCAT	1 cut(s)	2194
MslI	CAYNNNNRTG	3 cut(s)	717, 1451, 1865
MspA1I	CMGCKG	3 cut(s)	1283, 1489, 2093
MspCI	CTTAAG	1 cut(s)	1508
MspI	CCGG	2 cut(s)	2001, 2265
MspR9I	CCNGG	2 cut(s)	800, 1956
Mva1269I	GAATGC	2 cut(s)	222, 963
MvaI	CCWGG	2 cut(s)	800, 1956
MvnI	CGCG	2 cut(s)	1407, 1998
MwoI	GCNNNNNNNGC	7 cut(s)	365, 569, 677, 1367, 1805, 1896, 2132
NcoI	CCATGG	3 cut(s)	249, 1128, 1318
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	9 cut(s)	391, 436, 1036, 1135, 1207, 1654, 2115, 2146, 2162
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	2 cut(s)	1663, 1919
NruI	TCGCGA	1 cut(s)	1407
NsiI	ATGCAT	1 cut(s)	2194
NspI	RCATGY	2 cut(s)	675, 877
OliI	CACNNNNGTG	1 cut(s)	1865
PceI	AGGCCT	1 cut(s)	1899
PciSI	GCTCTTC	3 cut(s)	272, 666, 1815
PctI	GAATGC	2 cut(s)	222, 963
PfeI	GAWTC	8 cut(s)	12, 99, 112, 1094, 1124, 1730, 1928, 1947
PflFI	GACNNNGTC	1 cut(s)	1917
PflMI	CCANNNNNTGG	1 cut(s)	1489
PkrI	GCNGC	7 cut(s)	595, 701, 1285, 1582, 1997, 2095, 2125
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	838
PshAI	GACNNNNGTC	1 cut(s)	1259
Psp5II	RGGWCCY	1 cut(s)	838
Psp6I	CCWGG	2 cut(s)	798, 1954
PspGI	CCWGG	2 cut(s)	798, 1954
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	4 cut(s)	838, 852, 1237, 1993
PspPPI	RGGWCCY	1 cut(s)	838
PstI	CTGCAG	1 cut(s)	2098
PsuI	RGATCY	2 cut(s)	1207, 2115
PsyI	GACNNNGTC	1 cut(s)	1917
PvuII	CAGCTG	3 cut(s)	1283, 1489, 2093
RruI	TCGCGA	1 cut(s)	1407
RsaI	GTAC	8 cut(s)	170, 373, 457, 765, 872, 1337, 1517, 2089
RsaNI	GTAC	8 cut(s)	169, 372, 456, 764, 871, 1336, 1516, 2088
RseI	CAYNNNNRTG	3 cut(s)	717, 1451, 1865
SapI	GCTCTTC	3 cut(s)	272, 666, 1815
SatI	GCNGC	7 cut(s)	594, 700, 1284, 1581, 1996, 2094, 2124
Sau3AI	GATC	9 cut(s)	391, 436, 1036, 1135, 1207, 1654, 2115, 2146, 2162
Sau96I	GGNCC	4 cut(s)	838, 852, 1237, 1993
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	800, 1956
SduI	GDGCHC	4 cut(s)	403, 654, 1017, 1372
SfaNI	GCATC	4 cut(s)	128, 876, 1096, 2201
SfcI	CTRYAG	1 cut(s)	2094
SinI	GGWCC	3 cut(s)	838, 852, 1237
SmiMI	CAYNNNNRTG	3 cut(s)	717, 1451, 1865
SmlI	CTYRAG	5 cut(s)	683, 986, 1177, 1508, 1646
SmoI	CTYRAG	5 cut(s)	683, 986, 1177, 1508, 1646
SseBI	AGGCCT	1 cut(s)	1899
SsiI	CCGC	5 cut(s)	593, 669, 699, 789, 1996
SspI	AATATT	2 cut(s)	1052, 1725
SspMI	CTAG	4 cut(s)	161, 354, 1245, 1592
StuI	AGGCCT	1 cut(s)	1899
StyD4I	CCNGG	2 cut(s)	798, 1954
StyI	CCWWGG	5 cut(s)	249, 1128, 1296, 1318, 1937
TaaI	ACNGT	1 cut(s)	1617
TaiI	ACGT	2 cut(s)	1781, 2272
TaqI	TCGA	4 cut(s)	8, 884, 1425, 1950
TatI	WGTACW	3 cut(s)	763, 1515, 2087
TauI	GCSGC	3 cut(s)	596, 702, 1998
TfiI	GAWTC	8 cut(s)	12, 99, 112, 1094, 1124, 1730, 1928, 1947
TscAI	CASTG	3 cut(s)	631, 759, 1372
TseFI	GTSAC	2 cut(s)	1663, 1919
TseI	GCWGC	4 cut(s)	1283, 1580, 2093, 2123
Tsp45I	GTSAC	2 cut(s)	1663, 1919
TspGWI	ACGGA	2 cut(s)	214, 223
TspRI	CASTG	3 cut(s)	631, 759, 1372
Tth111I	GACNNNGTC	1 cut(s)	1917
Van91I	CCANNNNNTGG	1 cut(s)	1489
Vha464I	CTTAAG	1 cut(s)	1508
VneI	GTGCAC	1 cut(s)	1013
VpaK11BI	GGWCC	3 cut(s)	838, 852, 1237
XapI	RAATTY	4 cut(s)	708, 1459, 1762, 2024
XceI	RCATGY	2 cut(s)	675, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2061
XmiI	GTMKAC	3 cut(s)	263, 344, 1044
XspI	CTAG	4 cut(s)	161, 354, 1245, 1592
Zsp2I	ATGCAT	1 cut(s)	2194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.