Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003255.1

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Reverse (-)

1075 .. 1893

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003255.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgttctgcggatacgcccaacagctggaaagtgaagaggctcttaagttgtactcagaactacaattatcaagacaaaatcctaatgagtttacttttgcttccctaatctcagcagccggcaacctagcaagtatccaacatggtcaacagttccatagccagatctttaaaattggtcttgagaatgatccttttgtcacaaatgcccttgtggatatgtattccaagtgtggaagcattaaagaggctcgcaaaatatttgattccaaaactttgaaagatgttgcctgttggaattccattatctcaacgtatgcacatcatggagaagcagaaaaagctcttctgatgtttgaaaaaatgatgaatgaggggataaaacccaactatatcacctttgtgggggtgctatcagcttgtagccatgcaggccttgtggaagatggacttggtcactttgaatcaatgccttggtttggaatcgaagcagggatagaacattattcttgcatagtttctctcttgggccgcgccggtaaattatctgaagctaaggaatttattgagaaaatgccaatgaaaccaccagcaattatatggaggagtttactcagttcatgtacagctgcaggtaatgttgaattggggatctatgcagcagagatggcaattttgagtgatccaatggatagtggatcgtatatcttactttcaaatatgtatgcatccgaaggtatgtgggatgatgtcaagagagtgaggaaaaaaatggagtataatggtgtagtgaaagaaaccggacgtagttggttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

272

Amino Acids

30.26

Weight (kDa)

5.56

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccII	CGCG	1 cut(s)	534
AciI	CCGC	2 cut(s)	9, 532
AclWI	GGATC	4 cut(s)	185, 659, 677, 706
AcsI	RAATTY	2 cut(s)	298, 560
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	53, 625
AfiI	CCNNNNNNNGG	3 cut(s)	25, 405, 479
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	280, 359, 464, 644, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	5 cut(s)	25, 344, 419, 554, 629
AluI	AGCT	5 cut(s)	25, 344, 419, 554, 629
AlwI	GGATC	4 cut(s)	185, 659, 677, 706
AoxI	GGCC	2 cut(s)	433, 529
ApeKI	GCWGC	3 cut(s)	116, 629, 659
ApoI	RAATTY	2 cut(s)	298, 560
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	529
AsuHPI	GGTGA	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	128, 616, 671
BccI	CCATC	2 cut(s)	440, 661
BciVI	GTATCC	2 cut(s)	5, 146
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	630
BfrI	CTTAAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	623
BfuI	GTATCC	2 cut(s)	5, 146
BglI	GCCNNNNNGGC	1 cut(s)	432
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	4 cut(s)	117, 532, 630, 660
BlsI	GCNGC	4 cut(s)	118, 533, 631, 661
BmgT120I	GGNCC	1 cut(s)	529
BmsI	GCATC	1 cut(s)	737
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 405, 479
Bse118I	RCCGGY	2 cut(s)	119, 536
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	2 cut(s)	728, 751
BseLI	CCNNNNNNNGG	3 cut(s)	25, 405, 479
BseMII	CTCAG	3 cut(s)	69, 126, 628
BseRI	GAGGAG	1 cut(s)	619
BseXI	GCAGC	3 cut(s)	128, 616, 671
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	435, 531
BsiSI	CCGG	3 cut(s)	120, 537, 801
BslI	CCNNNNNNNGG	3 cut(s)	25, 405, 479
BsnI	GGCC	2 cut(s)	435, 531
Bsp1407I	TGTACA	1 cut(s)	623
Bsp143I	GATC	5 cut(s)	165, 190, 651, 682, 698
BspACI	CCGC	2 cut(s)	9, 532
BspANI	GGCC	2 cut(s)	435, 531
BspCNI	CTCAG	3 cut(s)	68, 125, 627
BspFNI	CGCG	1 cut(s)	534
BspMAI	CTGCAG	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	4 cut(s)	185, 659, 677, 706
BspQI	GCTCTTC	1 cut(s)	351
BspTI	CTTAAG	1 cut(s)	44
BsrFI	RCCGGY	2 cut(s)	119, 536
BsrGI	TGTACA	1 cut(s)	623
BssAI	RCCGGY	2 cut(s)	119, 536
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	5 cut(s)	165, 190, 651, 682, 698
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	2 cut(s)	30, 351
BstAFI	CTTAAG	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	121, 253, 433
BstDEI	CTNAG	4 cut(s)	55, 112, 555, 614
BstF5I	GGATG	2 cut(s)	728, 751
BstFNI	CGCG	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	5 cut(s)	168, 193, 654, 685, 701
BstMBI	GATC	5 cut(s)	165, 190, 651, 682, 698
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 432, 668
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	128, 616, 671
BstX2I	RGATCY	2 cut(s)	165, 651
BstYI	RGATCY	2 cut(s)	165, 651
BsuI	GTATCC	2 cut(s)	5, 146
BsuRI	GGCC	2 cut(s)	435, 531
BtsCI	GGATG	2 cut(s)	728, 751
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	3 cut(s)	121, 253, 433
CfoI	GCGC	1 cut(s)	536
Cfr10I	RCCGGY	2 cut(s)	119, 536
Cfr13I	GGNCC	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	52, 624
CviAII	CATG	4 cut(s)	143, 326, 428, 621
CviQI	GTAC	2 cut(s)	52, 624
DdeI	CTNAG	4 cut(s)	55, 112, 555, 614
DpnI	GATC	5 cut(s)	167, 192, 653, 684, 700
DpnII	GATC	5 cut(s)	165, 190, 651, 682, 698
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	30, 351
EarI	CTCTTC	2 cut(s)	30, 351
Eco130I	CCWWGG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	570
EcoRI	GAATTC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	4 cut(s)	146, 329, 431, 624
FalI	AAGNNNNNCTT	4 cut(s)	27, 59, 435, 467
FatI	CATG	4 cut(s)	142, 325, 427, 620
Fnu4HI	GCNGC	4 cut(s)	117, 532, 630, 660
FokI	GGATG	2 cut(s)	715, 758
Fsp4HI	GCNGC	4 cut(s)	117, 532, 630, 660
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	4 cut(s)	117, 532, 630, 660
HaeIII	GGCC	2 cut(s)	435, 531
HapII	CCGG	3 cut(s)	120, 537, 801
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	4 cut(s)	146, 329, 431, 624
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	266, 464, 483
HpaII	CCGG	3 cut(s)	120, 537, 801
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	3 cut(s)	93, 149, 611
Hpy188I	TCNGA	4 cut(s)	58, 351, 550, 733
Hpy188III	TCNNGA	3 cut(s)	72, 182, 754
Hpy8I	GTNNAC	3 cut(s)	93, 149, 611
HpyAV	CCTTC	1 cut(s)	728
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	2 cut(s)	314, 805
HpyCH4V	TGCA	6 cut(s)	320, 431, 513, 632, 659, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 432, 668
HpyF3I	CTNAG	4 cut(s)	55, 112, 555, 614
HpySE526I	ACGT	2 cut(s)	314, 805
Hsp92II	CATG	4 cut(s)	146, 329, 431, 624
HspAI	GCGC	1 cut(s)	534
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	165, 190, 651, 682, 698
LguI	GCTCTTC	1 cut(s)	351
Lsp1109I	GCAGC	3 cut(s)	128, 616, 671
LweI	GCATC	1 cut(s)	737
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	314, 805
MaeIII	GTNAC	2 cut(s)	199, 455
MalI	GATC	5 cut(s)	167, 192, 653, 684, 700
MboI	GATC	5 cut(s)	165, 190, 651, 682, 698
MboII	GAAGA	3 cut(s)	47, 338, 455
MflI	RGATCY	2 cut(s)	165, 651
MluCI	AATT	8 cut(s)	65, 174, 298, 542, 560, 594, 644, 672
MmeI	TCCRAC	2 cut(s)	163, 275
MnlI	CCTC	5 cut(s)	31, 241, 367, 597, 756
Mph1103I	ATGCAT	1 cut(s)	730
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	3 cut(s)	45, 171, 243
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	2 cut(s)	25, 629
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	3 cut(s)	120, 537, 801
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	3 cut(s)	341, 432, 668
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	5 cut(s)	165, 190, 651, 682, 698
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	4 cut(s)	146, 329, 431, 624
NmuCI	GTSAC	2 cut(s)	199, 455
NsiI	ATGCAT	1 cut(s)	730
OliI	CACNNNNGTG	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	351
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	266, 464, 483
PflFI	GACNNNGTC	1 cut(s)	453
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	118, 533, 631, 661
PspPI	GGNCC	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	2 cut(s)	165, 651
PsyI	GACNNNGTC	1 cut(s)	453
PvuII	CAGCTG	2 cut(s)	25, 629
RsaI	GTAC	2 cut(s)	53, 625
RsaNI	GTAC	2 cut(s)	52, 624
RseI	CAYNNNNRTG	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	45, 171, 243
SatI	GCNGC	4 cut(s)	117, 532, 630, 660
Sau3AI	GATC	5 cut(s)	165, 190, 651, 682, 698
Sau96I	GGNCC	1 cut(s)	529
SfaNI	GCATC	1 cut(s)	737
SfcI	CTRYAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	2 cut(s)	44, 182
SmoI	CTYRAG	2 cut(s)	44, 182
Sse9I	AATT	8 cut(s)	65, 174, 298, 542, 560, 594, 644, 672
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	2 cut(s)	9, 532
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	2 cut(s)	317, 808
TaqI	TCGA	1 cut(s)	486
TasI	AATT	8 cut(s)	65, 174, 298, 542, 560, 594, 644, 672
TatI	WGTACW	2 cut(s)	51, 623
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	266, 464, 483
Tru1I	TTAA	3 cut(s)	45, 171, 243
Tru9I	TTAA	3 cut(s)	45, 171, 243
TseFI	GTSAC	2 cut(s)	199, 455
TseI	GCWGC	3 cut(s)	116, 629, 659
Tsp45I	GTSAC	2 cut(s)	199, 455
TspDTI	ATGAA	3 cut(s)	383, 596, 609
Tth111I	GACNNNGTC	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	44
XapI	RAATTY	2 cut(s)	298, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	597
XspI	CTAG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.