Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

18583244 .. 18584524

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G40100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAATCTACTACGCTACACGTCGAAATCGATTCAAAAGGCGATCGAGCACCGAATCGAACATCGTCCGGATCGAGAAAATCTCCATTGGAATCCCGAATTGGTTTCTGAATCTCCCGCACCGGATGAGAAGGCCTTATCCTCATCTTCTGCCGCGAGATCTAATCCGTACGTCGCTCGTGCTCCTACTGAAACTTCGGATGCCTCGTTGAAAGAAACGATGGAATCTGTGAAAGGTGTGCTTGGGAGATGGGGAAGGAGGGTTGGAGAAGCTGCAATGAAGGCAGAGAGCCTTGCCGGGAACACGTGGCAACACCCTTTGCGTGCTGCAATGGGAAGAATTGCACAAAGTACAAAGGTTCTGGCAGAAGGAGGATATGAGAAAATTTTCAGGCAAACCTTTGAAACTGTTCCAGAGGAGCAACTGCAAAATTCATTTGCGTGCTACTTATCAACATCAGCTGGTCCAGTCATGGGAGTTCTTTACGTAGTAATCCCATTACATCAGCTTAAATCGGTTAACCCTTCGATAAGCACAGTTAATCCTGCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTCTTAAACTACGAAGGCGCTGTTACATCTCTACAAGATACATTGCAAGCCGGTGCCTCAGTCTGTGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

225

Amino Acids

24.85

Weight (kDa)

6.09

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	656
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	2 cut(s)	117, 153
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	384, 430
AcvI	CACGTG	1 cut(s)	306
AfaI	GTAC	3 cut(s)	170, 352, 557
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	2 cut(s)	18, 303
AgsI	TTSAA	3 cut(s)	35, 211, 404
AjiI	CACGTC	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	272, 461, 508
AluI	AGCT	3 cut(s)	272, 461, 508
Alw21I	GWGCWC	2 cut(s)	51, 184
AlwI	GGATC	1 cut(s)	78
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	272, 326
ApoI	RAATTY	2 cut(s)	384, 430
Asp700I	GAANNNNTTC	2 cut(s)	386, 408
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	656
BauI	CACGAG	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	51, 184
BbvI	GCAGC	2 cut(s)	259, 313
BccI	CCATC	2 cut(s)	214, 243
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	624
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	3 cut(s)	153, 273, 327
BlsI	GCNGC	3 cut(s)	154, 274, 328
Bme1390I	CCNGG	2 cut(s)	298, 563
Bme18I	GGWCC	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	2 cut(s)	298, 563
BmsI	GCATC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpuMI	CCSGG	1 cut(s)	298
Bsa29I	ATCGAT	1 cut(s)	29
BsaAI	YACGTR	2 cut(s)	306, 487
BsaWI	WCCGGW	2 cut(s)	67, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse118I	RCCGGY	1 cut(s)	653
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	3 cut(s)	282, 336, 644
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	563
BseCI	ATCGAT	1 cut(s)	29
BseGI	GGATG	3 cut(s)	130, 205, 558
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	3 cut(s)	282, 336, 644
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	2 cut(s)	259, 313
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	2 cut(s)	45, 576
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	656
BshVI	ATCGAT	1 cut(s)	29
BsiEI	CGRYCG	2 cut(s)	45, 576
BsiHKAI	GWGCWC	2 cut(s)	51, 184
BsiSI	CCGG	4 cut(s)	68, 122, 297, 654
BsiWI	CGTACG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	473
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	51, 184
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	42, 70, 158
BspACI	CCGC	2 cut(s)	117, 153
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	674
BspDI	ATCGAT	1 cut(s)	29
BspEI	TCCGGA	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	658
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	656
BsrDI	GCAATG	3 cut(s)	282, 336, 644
BsrFI	RCCGGY	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	653
BssMI	GATC	3 cut(s)	42, 70, 158
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	409, 538
BstBAI	YACGTR	2 cut(s)	306, 487
BstC8I	GCNNGC	3 cut(s)	324, 442, 651
BstDEI	CTNAG	1 cut(s)	661
BstF5I	GGATG	3 cut(s)	130, 205, 558
BstFNI	CGCG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	3 cut(s)	45, 73, 161
BstMBI	GATC	3 cut(s)	42, 70, 158
BstMCI	CGRYCG	2 cut(s)	45, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	296, 561
BstSFI	CTRYAG	1 cut(s)	546
BstSNI	TACGTA	1 cut(s)	487
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	259, 313
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	134
BsuTUI	ATCGAT	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	130, 205, 558
Cac8I	GCNNGC	3 cut(s)	324, 442, 651
CfoI	GCGC	1 cut(s)	623
Cfr10I	RCCGGY	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	464
ClaI	ATCGAT	1 cut(s)	29
Csp6I	GTAC	3 cut(s)	169, 351, 556
CviAII	CATG	3 cut(s)	472, 584, 598
CviJI	RGCY	6 cut(s)	134, 272, 291, 461, 508, 653
CviKI_1	RGCY	6 cut(s)	134, 272, 291, 461, 508, 653
CviQI	GTAC	3 cut(s)	169, 351, 556
DdeI	CTNAG	1 cut(s)	661
DpnI	GATC	3 cut(s)	44, 72, 160
DpnII	GATC	3 cut(s)	42, 70, 158
Eco105I	TACGTA	1 cut(s)	487
Eco147I	AGGCCT	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	464
Eco72I	CACGTG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	475, 587, 601
FaiI	YATR	5 cut(s)	378, 473, 585, 599, 676
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	3 cut(s)	471, 583, 597
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	3 cut(s)	153, 273, 327
FokI	GGATG	3 cut(s)	137, 212, 545
Fsp4HI	GCNGC	3 cut(s)	153, 273, 327
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	3 cut(s)	153, 273, 327
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	4 cut(s)	68, 122, 297, 654
HhaI	GCGC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	475, 587, 601
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HincII	GTYRAC	2 cut(s)	520, 577
HindII	GTYRAC	2 cut(s)	520, 577
HinfI	GANTC	6 cut(s)	4, 31, 54, 91, 110, 224
HpaI	GTTAAC	1 cut(s)	520
HpaII	CCGG	4 cut(s)	68, 122, 297, 654
Hpy166II	GTNNAC	2 cut(s)	520, 577
Hpy188I	TCNGA	2 cut(s)	109, 199
Hpy188III	TCNNGA	4 cut(s)	68, 74, 95, 413
Hpy8I	GTNNAC	2 cut(s)	520, 577
Hpy99I	CGWCG	3 cut(s)	25, 176, 581
HpyAV	CCTTC	6 cut(s)	124, 249, 274, 362, 534, 611
HpyCH4III	ACNGT	2 cut(s)	409, 538
HpyCH4IV	ACGT	4 cut(s)	20, 171, 305, 486
HpyCH4V	TGCA	6 cut(s)	275, 329, 344, 427, 548, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	661
HpySE526I	ACGT	4 cut(s)	20, 171, 305, 486
Hsp92II	CATG	3 cut(s)	475, 587, 601
HspAI	GCGC	1 cut(s)	621
Kpn2I	TCCGGA	1 cut(s)	67
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	42, 70, 158
LmnI	GCTCC	2 cut(s)	187, 418
Lsp1109I	GCAGC	2 cut(s)	259, 313
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	4 cut(s)	20, 171, 305, 486
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	3 cut(s)	44, 72, 160
MboI	GATC	3 cut(s)	42, 70, 158
MboII	GAAGA	2 cut(s)	138, 348
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	51, 184
MluCI	AATT	4 cut(s)	98, 339, 384, 430
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	6 cut(s)	151, 214, 252, 365, 409, 670
MroI	TCCGGA	1 cut(s)	67
MroXI	GAANNNNTTC	2 cut(s)	386, 408
MseI	TTAA	4 cut(s)	510, 519, 540, 608
MslI	CAYNNNNRTG	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	4 cut(s)	68, 122, 297, 654
MspR9I	CCNGG	2 cut(s)	298, 563
MvaI	CCWGG	1 cut(s)	563
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	3 cut(s)	42, 70, 158
NlaIII	CATG	3 cut(s)	475, 587, 601
NlaIV	GGNNCC	1 cut(s)	658
PceI	AGGCCT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	3 cut(s)	26, 70, 203
PdmI	GAANNNNTTC	2 cut(s)	386, 408
PfeI	GAWTC	6 cut(s)	4, 31, 54, 91, 110, 224
Pfl23II	CGTACG	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	154, 274, 328
Ple19I	CGATCG	1 cut(s)	45
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
Ppu21I	YACGTR	2 cut(s)	306, 487
Psp6I	CCWGG	1 cut(s)	561
PspCI	CACGTG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	561
PspLI	CGTACG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	658
PspPI	GGNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	158
PvuI	CGATCG	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	3 cut(s)	170, 352, 557
RsaNI	GTAC	3 cut(s)	169, 351, 556
RseI	CAYNNNNRTG	1 cut(s)	439
SalI	GTCGAC	1 cut(s)	575
SaqAI	TTAA	4 cut(s)	510, 519, 540, 608
SatI	GCNGC	3 cut(s)	153, 273, 327
Sau3AI	GATC	3 cut(s)	42, 70, 158
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	298, 563
SduI	GDGCHC	2 cut(s)	51, 184
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	439
SnaBI	TACGTA	1 cut(s)	487
Sse9I	AATT	4 cut(s)	98, 339, 384, 430
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	117, 153
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	296, 561
TaaI	ACNGT	2 cut(s)	409, 538
TaiI	ACGT	4 cut(s)	23, 174, 308, 489
TaqI	TCGA	7 cut(s)	23, 29, 45, 57, 73, 527, 576
TaqII	GACCGA	1 cut(s)	562
TasI	AATT	4 cut(s)	98, 339, 384, 430
TatI	WGTACW	2 cut(s)	350, 555
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	6 cut(s)	4, 31, 54, 91, 110, 224
Tru1I	TTAA	4 cut(s)	510, 519, 540, 608
Tru9I	TTAA	4 cut(s)	510, 519, 540, 608
TseI	GCWGC	2 cut(s)	272, 326
TspDTI	ATGAA	4 cut(s)	17, 293, 423, 586
TspGWI	ACGGA	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	2 cut(s)	384, 430
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	2 cut(s)	386, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.