Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

12221741 .. 12224996

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGACTCGCCCAACATTACCGACAAGCCGCAGACTCAAGCGAAGAGCCAGGACCCGAATCCGAAGCCCGCCGCCGTGGATGCACAGAACGGGGACAAGAATCGGGCAAGCTTCGTCATGGAGTCGTCGGAGCCTCCGCCGCAGCCTCAGCCTCAGCCGGAGATGACTACCAAGAGATCGGTCCATTGGAGCCCCGAATTGGTCACTCAATCCGGCTCCAACAATACGAGCTACGCCTCCGAGGGATCGGGCGCCTACGTCGGTCAATCCCCGGCGTTGACCCCGGCCTTCTCGATCAAAGATTCGATGGAGACTGTAAAGAGTGTGTTCGGTAGATGGAGAAGTGCGGTGGGGGAAGCTACGAAGAAGGCTGAGGATCTCGCCGGAAACACGTGGCAGCACTTTAAAACGAGCCCTAGTTTTGCCGATGCTGCTATGGGAAGAATTGCACAGGGAACAAAGGTTCTAGCAGAAGGTGGTTACGAGAAGATCTTTCGATCAACCTTTGAGACAGCTCCTGAGGAGCAGCTTCAGAATTCATTTGCGTGTTACTTGTCTACGTCAGCAGGCCCAGTCATGGGAGTTTTATATGCATCCTCTGCAAAGATTGCTTATTGTAGTGATAATCCCATATCCTACAAAGCTAATGACCAAACTGAATGGAGTTATTATAAGGTGGTTATCCCTCTACATCAGCTCAAAGCAGTCAATCCTTCATCAAGCAGATCCAATCCTGCTGAAAAGTACATACAGGTTATCTCAGTTGATAACCATGAATTTTGGTTTATGGGCTTCTTGAATTACGATGCTGCTGTGGAATGCCTACATGGAGCTCTACAAGCCCGTAGCTTATCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

287

Amino Acids

31.15

Weight (kDa)

5.78

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	164 - 280	5.7e-17	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AccB1I	GGYRCC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	557
AciI	CCGC	6 cut(s)	29, 69, 72, 137, 140, 347
AclWI	GGATC	3 cut(s)	253, 384, 720
AcsI	RAATTY	2 cut(s)	535, 776
AcuI	CTGAAG	1 cut(s)	515
AcvI	CACGTG	1 cut(s)	393
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	3 cut(s)	199, 577, 578
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	1 cut(s)	799
AjnI	CCWGG	1 cut(s)	48
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	9 cut(s)	111, 231, 359, 515, 529, 644, 697, 833, 849
AluI	AGCT	9 cut(s)	111, 231, 359, 515, 529, 644, 697, 833, 849
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	2 cut(s)	305, 503
AlwI	GGATC	3 cut(s)	253, 384, 720
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	2 cut(s)	285, 568
ApeKI	GCWGC	5 cut(s)	142, 397, 431, 526, 809
ApoI	RAATTY	2 cut(s)	535, 776
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	3 cut(s)	52, 181, 569
AsuC2I	CCSGG	2 cut(s)	272, 284
AvaII	GGWCC	2 cut(s)	52, 181
AxyI	CCTNAGG	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	3 cut(s)	194, 416, 835
BbrPI	CACGTG	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	835
BbvCI	CCTCAGC	3 cut(s)	147, 153, 372
BbvI	GCAGC	5 cut(s)	154, 409, 418, 538, 796
BccI	CCATC	2 cut(s)	301, 330
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	2 cut(s)	272, 284
BcoDI	GTCTC	2 cut(s)	305, 503
BfaI	CTAG	2 cut(s)	417, 467
BfoI	RGCGCY	1 cut(s)	255
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	8 cut(s)	29, 72, 140, 143, 398, 432, 527, 810
BlsI	GCNGC	8 cut(s)	30, 73, 141, 144, 399, 433, 528, 811
Bme1390I	CCNGG	3 cut(s)	50, 272, 284
Bme18I	GGWCC	2 cut(s)	52, 181
BmgT120I	GGNCC	3 cut(s)	52, 181, 569
BmiI	GGNNCC	5 cut(s)	54, 132, 191, 217, 253
BmrFI	CCNGG	3 cut(s)	50, 272, 284
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	4 cut(s)	70, 418, 602, 796
BmuI	ACTGGG	1 cut(s)	566
Bpu10I	CCTNAGC	3 cut(s)	147, 153, 372
BpuEI	CTTGAG	1 cut(s)	21
BpuMI	CCSGG	2 cut(s)	272, 284
BsaAI	YACGTR	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	4 cut(s)	75, 240, 270, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 577, 578
Bse1I	ACTGG	1 cut(s)	572
Bse21I	CCTNAGG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	4 cut(s)	75, 240, 270, 282
BseGI	GGATG	2 cut(s)	85, 593
BseLI	CCNNNNNNNGG	3 cut(s)	199, 577, 578
BseMII	CTCAG	5 cut(s)	161, 167, 363, 510, 774
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	5 cut(s)	154, 409, 418, 538, 796
BshFI	GGCC	2 cut(s)	287, 570
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	5 cut(s)	158, 213, 272, 284, 384
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	3 cut(s)	199, 577, 578
BsmAI	GTCTC	2 cut(s)	305, 503
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	287, 570
Bsp1286I	GDGCHC	3 cut(s)	194, 416, 835
Bsp143I	GATC	7 cut(s)	176, 245, 294, 376, 489, 497, 725
BspACI	CCGC	6 cut(s)	29, 69, 72, 137, 140, 347
BspANI	GGCC	2 cut(s)	287, 570
BspCNI	CTCAG	5 cut(s)	160, 166, 364, 511, 773
BspLI	GGNNCC	5 cut(s)	54, 132, 191, 217, 253
BspPI	GGATC	3 cut(s)	253, 384, 720
BspQI	GCTCTTC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	4 cut(s)	75, 240, 270, 282
BssMI	GATC	7 cut(s)	176, 245, 294, 376, 489, 497, 725
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	2 cut(s)	599, 608
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	3 cut(s)	69, 109, 568
BstDEI	CTNAG	5 cut(s)	147, 153, 372, 519, 760
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	85, 593
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	7 cut(s)	179, 248, 297, 379, 492, 500, 728
BstMAI	GTCTC	2 cut(s)	305, 503
BstMBI	GATC	7 cut(s)	176, 245, 294, 376, 489, 497, 725
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 139, 148, 431, 599, 608, 839
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	48, 270, 282
BstV1I	GCAGC	5 cut(s)	154, 409, 418, 538, 796
BstX2I	RGATCY	3 cut(s)	376, 489, 725
BstYI	RGATCY	3 cut(s)	376, 489, 725
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	287, 570
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	85, 593
Cac8I	GCNNGC	3 cut(s)	69, 109, 568
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	3 cut(s)	52, 181, 569
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	4 cut(s)	118, 577, 773, 827
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	5 cut(s)	147, 153, 372, 519, 760
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	7 cut(s)	178, 247, 296, 378, 491, 499, 727
DpnII	GATC	7 cut(s)	176, 245, 294, 376, 489, 497, 725
DraI	TTTAAA	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	833
Eco24I	GRGCYC	3 cut(s)	194, 416, 835
Eco47I	GGWCC	2 cut(s)	52, 181
Eco53kI	GAGCTC	1 cut(s)	833
Eco57I	CTGAAG	1 cut(s)	515
Eco72I	CACGTG	1 cut(s)	393
Eco81I	CCTNAGG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	833
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	3 cut(s)	194, 416, 835
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaeI	CATG	4 cut(s)	121, 580, 776, 830
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	4 cut(s)	117, 576, 772, 826
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	8 cut(s)	29, 72, 140, 143, 398, 432, 527, 810
FokI	GGATG	2 cut(s)	92, 580
FriOI	GRGCYC	3 cut(s)	194, 416, 835
Fsp4HI	GCNGC	8 cut(s)	29, 72, 140, 143, 398, 432, 527, 810
FspBI	CTAG	2 cut(s)	417, 467
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	8 cut(s)	29, 72, 140, 143, 398, 432, 527, 810
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	287, 570
HapII	CCGG	5 cut(s)	158, 213, 272, 284, 384
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	121, 580, 776, 830
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	6 cut(s)	5, 34, 58, 100, 122, 302
HpaII	CCGG	5 cut(s)	158, 213, 272, 284, 384
Hpy166II	GTNNAC	2 cut(s)	279, 558
Hpy188I	TCNGA	4 cut(s)	63, 130, 241, 534
Hpy188III	TCNNGA	3 cut(s)	292, 518, 796
Hpy8I	GTNNAC	2 cut(s)	279, 558
Hpy99I	CGWCG	2 cut(s)	130, 263
HpyAV	CCTTC	4 cut(s)	298, 361, 467, 723
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	3 cut(s)	258, 392, 560
HpyCH4V	TGCA	4 cut(s)	83, 449, 593, 602
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 139, 148, 431, 599, 608, 839
HpyF3I	CTNAG	5 cut(s)	147, 153, 372, 519, 760
HpySE526I	ACGT	3 cut(s)	258, 392, 560
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	121, 580, 776, 830
HspAI	GCGC	1 cut(s)	252
KasI	GGCGCC	1 cut(s)	251
Kzo9I	GATC	7 cut(s)	176, 245, 294, 376, 489, 497, 725
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	6 cut(s)	130, 189, 221, 520, 523, 830
Lsp1109I	GCAGC	5 cut(s)	154, 409, 418, 538, 796
LweI	GCATC	4 cut(s)	70, 418, 602, 796
MaeI	CTAG	2 cut(s)	417, 467
MaeII	ACGT	3 cut(s)	258, 392, 560
MaeIII	GTNAC	3 cut(s)	202, 479, 548
MalI	GATC	7 cut(s)	178, 247, 296, 378, 491, 499, 727
MboI	GATC	7 cut(s)	176, 245, 294, 376, 489, 497, 725
MboII	GAAGA	4 cut(s)	55, 376, 453, 499
MflI	RGATCY	3 cut(s)	376, 489, 725
MhlI	GDGCHC	3 cut(s)	194, 416, 835
MluCI	AATT	5 cut(s)	197, 444, 535, 776, 799
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	28, 131
MmeI	TCCRAC	2 cut(s)	108, 243
MnlI	CCTC	9 cut(s)	144, 156, 162, 235, 247, 367, 514, 607, 696
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	544
MspI	CCGG	5 cut(s)	158, 213, 272, 284, 384
MspR9I	CCNGG	3 cut(s)	50, 272, 284
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	7 cut(s)	80, 139, 148, 431, 599, 608, 839
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	2 cut(s)	272, 284
NdeII	GATC	7 cut(s)	176, 245, 294, 376, 489, 497, 725
NlaIII	CATG	4 cut(s)	121, 580, 776, 830
NlaIV	GGNNCC	5 cut(s)	54, 132, 191, 217, 253
NmuCI	GTSAC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	824
PfeI	GAWTC	3 cut(s)	58, 100, 302
PkrI	GCNGC	8 cut(s)	30, 73, 141, 144, 399, 433, 528, 811
PleI	GAGTC	2 cut(s)	28, 130
PluTI	GGCGCC	1 cut(s)	255
PmaCI	CACGTG	1 cut(s)	393
PmlI	CACGTG	1 cut(s)	393
PpsI	GAGTC	2 cut(s)	28, 130
Ppu21I	YACGTR	1 cut(s)	393
PpuMI	RGGWCCY	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	835
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	48
PspCI	CACGTG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	5 cut(s)	54, 132, 191, 217, 253
PspPI	GGNCC	3 cut(s)	52, 181, 569
PspPPI	RGGWCCY	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	3 cut(s)	376, 489, 725
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	544
SacI	GAGCTC	1 cut(s)	835
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	8 cut(s)	29, 72, 140, 143, 398, 432, 527, 810
Sau3AI	GATC	7 cut(s)	176, 245, 294, 376, 489, 497, 725
Sau96I	GGNCC	3 cut(s)	52, 181, 569
SchI	GAGTC	2 cut(s)	28, 131
ScrFI	CCNGG	3 cut(s)	50, 272, 284
SduI	GDGCHC	3 cut(s)	194, 416, 835
SfaNI	GCATC	4 cut(s)	70, 418, 602, 796
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	2 cut(s)	52, 181
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	5 cut(s)	197, 444, 535, 776, 799
SsiI	CCGC	6 cut(s)	29, 69, 72, 137, 140, 347
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	2 cut(s)	417, 467
SstI	GAGCTC	1 cut(s)	835
StyD4I	CCNGG	3 cut(s)	48, 270, 282
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	3 cut(s)	261, 395, 563
TaqI	TCGA	3 cut(s)	293, 305, 496
TaqII	GACCGA	2 cut(s)	169, 251
TasI	AATT	5 cut(s)	197, 444, 535, 776, 799
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	3 cut(s)	31, 74, 142
TfiI	GAWTC	3 cut(s)	58, 100, 302
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	5 cut(s)	142, 397, 431, 526, 809
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	528, 705, 789
VpaK11BI	GGWCC	2 cut(s)	52, 181
XapI	RAATTY	2 cut(s)	535, 776
XmiI	GTMKAC	1 cut(s)	557
XspI	CTAG	2 cut(s)	417, 467
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.