Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

59820363 .. 59820914

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTGAATCGCAACAGGGATCCAGTCCTTACGTGGCTCACTATGCCCCAGTGCTAAGTCCAACTTTCTCCTCCGAAGGTTCTGTGAAGACTGTATGGAATGCATTTGGGACATGGAGAAAGTCCGTCGGGGAAGCTACAAAGAAGGCTATGGATATCACCGGAAACACGTGGCAGCACTTGACAAGCCCTAGTTTTGCTGATGCTGCCATGGGAAGAATTACACGAGGAACAAAAGTTTTAGCGGAAGGTGGTTACTATAGGATCTTTCGATCGACCTTATTTGAGATTGTTCCTGAGGAGCAACTTCAAAATTCATTTGCATGTTACTTATGTACGTCGTACAGTCCAGTAATGGGAGTGTTATATGTATCTAATGCAAAGATTGCTTATTGCAGTGATAATCCCATTTTATACAAAGCTGAAAACCAGACTGAATGTAGCTATTATAAGGTGGTTTTCCCACTGCATCAGCTTAAAGCAGTTAATTCTTCGTTAAGCAGATCCAATCCTGGTGAAAAGTACATACATATTAATTATTATCTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

183

Amino Acids

20.45

Weight (kDa)

8.59

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	92 - 178	1.4e-08	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	4 cut(s)	15, 28, 272, 498
AcsI	RAATTY	1 cut(s)	313
AcvI	CACGTG	1 cut(s)	171
AfaI	GTAC	3 cut(s)	337, 344, 524
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	4 cut(s)	137, 422, 444, 475
AluI	AGCT	4 cut(s)	137, 422, 444, 475
AlwI	GGATC	4 cut(s)	15, 28, 272, 498
ApeKI	GCWGC	2 cut(s)	175, 206
ApoI	RAATTY	1 cut(s)	313
AseI	ATTAAT	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	151, 527
AxyI	CCTNAGG	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	225
BbrPI	CACGTG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	187, 193
BciT130I	CCWGG	1 cut(s)	513
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	259
BisI	GCNGC	2 cut(s)	176, 207
BlsI	GCNGC	2 cut(s)	177, 208
Bme1390I	CCNGG	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	513
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	193, 478
BmuI	ACTGGG	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	95
BsaAI	YACGTR	2 cut(s)	34, 171
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	24, 50, 350
Bse21I	CCTNAGG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	3 cut(s)	24, 50, 350
BseRI	GAGGAG	2 cut(s)	61, 314
BseXI	GCAGC	2 cut(s)	187, 193
Bsh1285I	CGRYCG	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	20, 264, 272, 503
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	4 cut(s)	15, 28, 272, 498
BsrI	ACTGG	3 cut(s)	24, 50, 350
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	20, 264, 272, 503
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	94, 347
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBAI	YACGTR	2 cut(s)	34, 171
BstDEI	CTNAG	2 cut(s)	56, 297
BstDSI	CCRYGG	1 cut(s)	210
BstKTI	GATC	4 cut(s)	23, 267, 275, 506
BstMBI	GATC	4 cut(s)	20, 264, 272, 503
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 206, 386
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	187, 193
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	3 cut(s)	20, 264, 503
BstYI	RGATCY	3 cut(s)	20, 264, 503
Bsu36I	CCTNAGG	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	210
BtsI	GCAGTG	2 cut(s)	403, 464
BtsIMutI	CAGTG	3 cut(s)	57, 403, 464
Csp6I	GTAC	3 cut(s)	336, 343, 523
CviAII	CATG	3 cut(s)	114, 211, 324
CviJI	RGCY	7 cut(s)	38, 137, 149, 189, 422, 444, 475
CviKI_1	RGCY	7 cut(s)	38, 137, 149, 189, 422, 444, 475
CviQI	GTAC	3 cut(s)	336, 343, 523
DdeI	CTNAG	2 cut(s)	56, 297
DpnI	GATC	4 cut(s)	22, 266, 274, 505
DpnII	GATC	4 cut(s)	20, 264, 272, 503
Eco130I	CCWWGG	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	117, 214, 327
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	3 cut(s)	113, 210, 323
Fnu4HI	GCNGC	2 cut(s)	176, 207
Fsp4HI	GCNGC	2 cut(s)	176, 207
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	2 cut(s)	176, 207
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	3 cut(s)	117, 214, 327
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	151, 527
Hpy188I	TCNGA	2 cut(s)	7, 76
Hpy188III	TCNNGA	1 cut(s)	296
Hpy99I	CGWCG	2 cut(s)	131, 343
HpyAV	CCTTC	3 cut(s)	71, 139, 242
HpyCH4III	ACNGT	2 cut(s)	94, 347
HpyCH4IV	ACGT	3 cut(s)	33, 170, 338
HpyCH4V	TGCA	5 cut(s)	104, 323, 380, 396, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 206, 386
HpyF3I	CTNAG	2 cut(s)	56, 297
HpySE526I	ACGT	3 cut(s)	33, 170, 338
Hsp92II	CATG	3 cut(s)	117, 214, 327
Kzo9I	GATC	4 cut(s)	20, 264, 272, 503
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	9 cut(s)	2, 37, 63, 175, 309, 363, 443, 498, 525
Lsp1109I	GCAGC	2 cut(s)	187, 193
LweI	GCATC	2 cut(s)	193, 478
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	3 cut(s)	33, 170, 338
MaeIII	GTNAC	2 cut(s)	254, 326
MalI	GATC	4 cut(s)	22, 266, 274, 505
MboI	GATC	4 cut(s)	20, 264, 272, 503
MboII	GAAGA	3 cut(s)	100, 228, 483
MflI	RGATCY	3 cut(s)	20, 264, 503
MluCI	AATT	4 cut(s)	219, 313, 487, 535
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	82, 221, 292
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	4 cut(s)	477, 486, 497, 534
MslI	CAYNNNNRTG	1 cut(s)	322
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	44, 206, 386
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	4 cut(s)	20, 264, 272, 503
NlaIII	CATG	3 cut(s)	117, 214, 327
NlaIV	GGNNCC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	327
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	177, 208
Ple19I	CGATCG	1 cut(s)	275
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
Ppu21I	YACGTR	2 cut(s)	34, 171
PshBI	ATTAAT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	511
PspCI	CACGTG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	22
PsuI	RGATCY	3 cut(s)	20, 264, 503
PvuI	CGATCG	1 cut(s)	275
RsaI	GTAC	3 cut(s)	337, 344, 524
RsaNI	GTAC	3 cut(s)	336, 343, 523
RseI	CAYNNNNRTG	1 cut(s)	322
SaqAI	TTAA	4 cut(s)	477, 486, 497, 534
SatI	GCNGC	2 cut(s)	176, 207
Sau3AI	GATC	4 cut(s)	20, 264, 272, 503
ScrFI	CCNGG	1 cut(s)	513
SfaNI	GCATC	2 cut(s)	193, 478
SfcI	CTRYAG	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	322
Sse9I	AATT	4 cut(s)	219, 313, 487, 535
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	94, 347
TaiI	ACGT	3 cut(s)	36, 173, 341
TaqI	TCGA	2 cut(s)	271, 275
TasI	AATT	4 cut(s)	219, 313, 487, 535
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	477, 486, 497, 534
Tru9I	TTAA	4 cut(s)	477, 486, 497, 534
TscAI	CASTG	3 cut(s)	57, 403, 471
TseI	GCWGC	2 cut(s)	175, 206
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	57, 403, 471
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.