Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

68686087 .. 68689484

Gene Structure 3398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGACCCGCCCAAGCCCACCGACAACCCCCAGACTCAGGCCCCCGCCGCCGATGCTCAGAACGGGGACAAGAATTGGGCCACCTTCGTCATGCAGTCGTCGGAGCCCCCCCCGCCGCAGCCGGAGCCGGAGACGACGGCCAAGAGATCCGTCCACTGGAGCCCCGAATTGGTCACGCAATCGACTTTCAGCAATACAATCCCCGTGCACGATTCGAACCAGGGATCGAGTGCTTACGCCGGTCAATCTCCGGCGTTGACCTCCTCTTTCTCGTTCAAAGATTCGGTGGAGTCTGTACGGAATGTGTTGGGGAGATGGACAAAGTCGGTGGGGGAAGCTACGAGGAAGGCTGAGGATCTCGCCGGAAACACGTGGCAGCACTTGAAAACAAGCCCTAGTCTTGCGGATGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTTCTAGCAGAAGGTGGTTACGAGAAGATCTTTCGATCAACCTTTGAGACAGTTCCTGAGGAGCAGCTTCAGAATTCATTTGCATGTTACTTGTCTACGTCAGCAGGTCCGGTCATGGGAGTTTTATATGTATCTTCTGCAAAGGTTGCTTATTGTAGTGATAATCCCATATCCTACAAAGCCGATAACCAAACTGAATGGAGTTATTATAAGGTGGTTATCCCTGTACATCAGCTCAAAGCAGTCAATCCTTCATCAAGTAGATCCAATCCTGCTGAAAAGTACATACAGGTTATCTCAGTTGATAATCATGAATTTTGGTTCATGGGCTTCTTGAATTATGATGCTGCTGTGGAATGCCTACTAGGAGCTCTACAAGCCCGGAGCTTATCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

279

Amino Acids

30.42

Weight (kDa)

5.41

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	157 - 274	1.8e-17	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	536
AciI	CCGC	6 cut(s)	8, 45, 48, 113, 116, 404
AclWI	GGATC	4 cut(s)	141, 232, 363, 699
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	514, 755
AcuI	CTGAAG	1 cut(s)	494
AcvI	CACGTG	1 cut(s)	372
AfaI	GTAC	3 cut(s)	297, 669, 725
AfiI	CCNNNNNNNGG	4 cut(s)	37, 156, 169, 557
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	277, 385, 778
AjnI	CCWGG	1 cut(s)	219
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	5 cut(s)	338, 508, 676, 812, 828
AluI	AGCT	5 cut(s)	338, 508, 676, 812, 828
Alw21I	GWGCWC	2 cut(s)	210, 814
Alw26I	GTCTC	2 cut(s)	125, 482
Alw44I	GTGCAC	1 cut(s)	206
AlwI	GGATC	4 cut(s)	141, 232, 363, 699
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	3 cut(s)	39, 78, 138
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	5 cut(s)	118, 376, 410, 505, 788
ApoI	RAATTY	2 cut(s)	514, 755
AspS9I	GGNCC	4 cut(s)	4, 40, 78, 548
AsuC2I	CCSGG	1 cut(s)	823
AsuII	TTCGAA	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	4, 548
AxyI	CCTNAGG	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	3 cut(s)	108, 164, 814
BbrPI	CACGTG	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	210, 814
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	5 cut(s)	130, 388, 397, 517, 775
BccI	CCATC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	823
BcoDI	GTCTC	2 cut(s)	125, 482
BfaI	CTAG	3 cut(s)	396, 446, 806
BfuAI	ACCTGC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	7 cut(s)	48, 116, 119, 377, 411, 506, 789
BlsI	GCNGC	7 cut(s)	49, 117, 120, 378, 412, 507, 790
Bme1390I	CCNGG	2 cut(s)	221, 823
Bme18I	GGWCC	2 cut(s)	4, 548
BmgT120I	GGNCC	4 cut(s)	4, 40, 78, 548
BmiI	GGNNCC	5 cut(s)	6, 42, 105, 126, 161
BmrFI	CCNGG	2 cut(s)	221, 823
BmsI	GCATC	3 cut(s)	43, 397, 775
BpmI	CTGGAG	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	823
BsaAI	YACGTR	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	220, 414
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 156, 169, 557
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	220, 414
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	4 cut(s)	37, 156, 169, 557
BseMII	CTCAG	5 cut(s)	50, 71, 342, 489, 753
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	2 cut(s)	253, 515
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	5 cut(s)	130, 388, 397, 517, 775
BshFI	GGCC	3 cut(s)	41, 80, 140
BsiHKAI	GWGCWC	2 cut(s)	210, 814
BsiSI	CCGG	7 cut(s)	122, 128, 240, 251, 363, 551, 823
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	37, 156, 169, 557
BsmAI	GTCTC	2 cut(s)	125, 482
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	41, 80, 140
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	4 cut(s)	108, 164, 210, 814
Bsp1407I	TGTACA	1 cut(s)	667
Bsp143I	GATC	6 cut(s)	146, 224, 355, 468, 476, 704
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	6 cut(s)	8, 45, 48, 113, 116, 404
BspANI	GGCC	3 cut(s)	41, 80, 140
BspCNI	CTCAG	5 cut(s)	49, 70, 343, 490, 752
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	5 cut(s)	6, 42, 105, 126, 161
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	4 cut(s)	141, 232, 363, 699
BspT104I	TTCGAA	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	220, 414
BssMI	GATC	6 cut(s)	146, 224, 355, 468, 476, 704
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	493
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstAUI	TGTACA	1 cut(s)	667
BstBAI	YACGTR	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	215
BstDEI	CTNAG	5 cut(s)	36, 57, 351, 498, 739
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	6 cut(s)	149, 227, 358, 471, 479, 707
BstMAI	GTCTC	2 cut(s)	125, 482
BstMBI	GATC	6 cut(s)	146, 224, 355, 468, 476, 704
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 53, 112, 124, 410, 587, 818
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	219, 821
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	5 cut(s)	130, 388, 397, 517, 775
BstX2I	RGATCY	4 cut(s)	146, 355, 468, 704
BstYI	RGATCY	4 cut(s)	146, 355, 468, 704
Bsu36I	CCTNAGG	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	41, 80, 140
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	536
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	751
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	4 cut(s)	4, 40, 78, 548
Csp6I	GTAC	3 cut(s)	296, 668, 724
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	6 cut(s)	91, 415, 525, 556, 752, 766
CviQI	GTAC	3 cut(s)	296, 668, 724
DdeI	CTNAG	5 cut(s)	36, 57, 351, 498, 739
DpnI	GATC	6 cut(s)	148, 226, 357, 470, 478, 706
DpnII	GATC	6 cut(s)	146, 224, 355, 468, 476, 704
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	3 cut(s)	108, 164, 814
Eco47I	GGWCC	2 cut(s)	4, 548
Eco53kI	GAGCTC	1 cut(s)	812
Eco57I	CTGAAG	1 cut(s)	494
Eco72I	CACGTG	1 cut(s)	372
Eco81I	CCTNAGG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	812
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	3 cut(s)	108, 164, 814
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	6 cut(s)	94, 418, 528, 559, 755, 769
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	6 cut(s)	90, 414, 524, 555, 751, 765
FauI	CCCGC	3 cut(s)	15, 52, 120
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	7 cut(s)	48, 116, 119, 377, 411, 506, 789
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	3 cut(s)	108, 164, 814
Fsp4HI	GCNGC	7 cut(s)	48, 116, 119, 377, 411, 506, 789
FspBI	CTAG	3 cut(s)	396, 446, 806
GluI	GCNGC	7 cut(s)	48, 116, 119, 377, 411, 506, 789
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	41, 80, 140
HapII	CCGG	7 cut(s)	122, 128, 240, 251, 363, 551, 823
Hin1II	CATG	6 cut(s)	94, 418, 528, 559, 755, 769
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	4 cut(s)	34, 212, 281, 290
HpaII	CCGG	7 cut(s)	122, 128, 240, 251, 363, 551, 823
Hpy166II	GTNNAC	4 cut(s)	154, 208, 258, 537
Hpy188I	TCNGA	3 cut(s)	60, 103, 513
Hpy188III	TCNNGA	3 cut(s)	497, 752, 775
Hpy8I	GTNNAC	4 cut(s)	154, 208, 258, 537
Hpy99I	CGWCG	2 cut(s)	103, 139
HpyAV	CCTTC	4 cut(s)	94, 340, 446, 702
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	2 cut(s)	371, 539
HpyCH4V	TGCA	5 cut(s)	94, 208, 428, 524, 581
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 53, 112, 124, 410, 587, 818
HpyF3I	CTNAG	5 cut(s)	36, 57, 351, 498, 739
HpySE526I	ACGT	2 cut(s)	371, 539
Hsp92II	CATG	6 cut(s)	94, 418, 528, 559, 755, 769
Kzo9I	GATC	6 cut(s)	146, 224, 355, 468, 476, 704
LmnI	GCTCC	6 cut(s)	103, 124, 159, 502, 809, 825
Lsp1109I	GCAGC	5 cut(s)	130, 388, 397, 517, 775
LweI	GCATC	3 cut(s)	43, 397, 775
MaeI	CTAG	3 cut(s)	396, 446, 806
MaeII	ACGT	2 cut(s)	371, 539
MaeIII	GTNAC	3 cut(s)	172, 458, 527
MalI	GATC	6 cut(s)	148, 226, 357, 470, 478, 706
MboI	GATC	6 cut(s)	146, 224, 355, 468, 476, 704
MboII	GAAGA	3 cut(s)	432, 478, 567
MflI	RGATCY	4 cut(s)	146, 355, 468, 704
MhlI	GDGCHC	4 cut(s)	108, 164, 210, 814
MluCI	AATT	6 cut(s)	73, 167, 423, 514, 755, 778
MlyI	GAGTC	2 cut(s)	28, 299
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	271, 274, 336, 346, 493
MslI	CAYNNNNRTG	1 cut(s)	523
MspI	CCGG	7 cut(s)	122, 128, 240, 251, 363, 551, 823
MspR9I	CCNGG	2 cut(s)	221, 823
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	7 cut(s)	47, 53, 112, 124, 410, 587, 818
NciI	CCSGG	1 cut(s)	823
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	6 cut(s)	146, 224, 355, 468, 476, 704
NlaIII	CATG	6 cut(s)	94, 418, 528, 559, 755, 769
NlaIV	GGNNCC	5 cut(s)	6, 42, 105, 126, 161
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	528
NspV	TTCGAA	1 cut(s)	215
PagI	TCATGA	1 cut(s)	751
PctI	GAATGC	1 cut(s)	803
PfeI	GAWTC	2 cut(s)	212, 281
PflFI	GACNNNGTC	1 cut(s)	322
PkrI	GCNGC	7 cut(s)	49, 117, 120, 378, 412, 507, 790
PleI	GAGTC	2 cut(s)	28, 298
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
PpsI	GAGTC	2 cut(s)	28, 298
Ppu21I	YACGTR	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	814
Psp6I	CCWGG	1 cut(s)	219
PspCI	CACGTG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	5 cut(s)	6, 42, 105, 126, 161
PspPI	GGNCC	4 cut(s)	4, 40, 78, 548
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	4 cut(s)	146, 355, 468, 704
PsyI	GACNNNGTC	1 cut(s)	322
RsaI	GTAC	3 cut(s)	297, 669, 725
RsaNI	GTAC	3 cut(s)	296, 668, 724
RseI	CAYNNNNRTG	1 cut(s)	523
SacI	GAGCTC	1 cut(s)	814
SatI	GCNGC	7 cut(s)	48, 116, 119, 377, 411, 506, 789
Sau3AI	GATC	6 cut(s)	146, 224, 355, 468, 476, 704
Sau96I	GGNCC	4 cut(s)	4, 40, 78, 548
SchI	GAGTC	2 cut(s)	28, 299
ScrFI	CCNGG	2 cut(s)	221, 823
SduI	GDGCHC	4 cut(s)	108, 164, 210, 814
SfaNI	GCATC	3 cut(s)	43, 397, 775
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	2 cut(s)	4, 548
SmiMI	CAYNNNNRTG	1 cut(s)	523
Sse9I	AATT	6 cut(s)	73, 167, 423, 514, 755, 778
SsiI	CCGC	6 cut(s)	8, 45, 48, 113, 116, 404
SspMI	CTAG	3 cut(s)	396, 446, 806
SstI	GAGCTC	1 cut(s)	814
StyD4I	CCNGG	2 cut(s)	219, 821
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	2 cut(s)	374, 542
TaqI	TCGA	4 cut(s)	182, 215, 227, 475
TasI	AATT	6 cut(s)	73, 167, 423, 514, 755, 778
TatI	WGTACW	2 cut(s)	667, 723
TauI	GCSGC	2 cut(s)	50, 118
TfiI	GAWTC	2 cut(s)	212, 281
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	5 cut(s)	118, 376, 410, 505, 788
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	507, 684, 754, 768
TspGWI	ACGGA	2 cut(s)	139, 313
TspRI	CASTG	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	322
VneI	GTGCAC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	4, 548
XapI	RAATTY	2 cut(s)	514, 755
XceI	RCATGY	1 cut(s)	528
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	3 cut(s)	396, 446, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.