Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

56410908 .. 56411492

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGAAGAATTGCACGAGGAACAAAACTTTTAGCGGAAGGTGGTTACGGTAGGATCTTTCGATCGACCTTTGAGATAGATCCCGAGGAGCAACTTCAAAATTCATTTGCATGTTACTTATGTACGTCGTCCGGTCCAACCGAAATTCGAGTCACCGGAAAAGCTGCATTTGCTCGTGACCCGCGTTCCGGATCGCACGAACCCAATCGCGGGGCGTTCGCTATCCGGATCGTCAAACATAGCGAACCCAATTTTCACACGGGTCTCGGGAATCACGCCTTGGCGTCCTCGACGGCTTTGAGGCTCCGAGCAGGGAGGACCAGTTTGACACTCGCGCCGTCTCGGCTCCGATCTCCTCTAATCGAACATTGTACCTATGATGATGGCCGTGATGGAGCGGAGATCGGGGCCGCATCGGTGATGGAGCGGAGATTAGAGGAACCGATTAGAGGAACATGTACCTGTGATGATGGCCGTGATGGAGCGGAGATTGGGGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

167

Amino Acids

17.97

Weight (kDa)

7.7

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	398, 427, 485
AccII	CGCG	3 cut(s)	184, 210, 335
AccIII	TCCGGA	2 cut(s)	188, 225
AciI	CCGC	7 cut(s)	35, 182, 210, 398, 411, 427, 485
AclWI	GGATC	4 cut(s)	62, 74, 199, 236
AcoI	YGGCCR	2 cut(s)	385, 472
AcsI	RAATTY	2 cut(s)	100, 144
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	3 cut(s)	124, 373, 460
AfiI	CCNNNNNNNGG	4 cut(s)	188, 209, 210, 449
AflIII	ACRYGT	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	2 cut(s)	164, 500
AluI	AGCT	2 cut(s)	164, 500
Alw26I	GTCTC	2 cut(s)	269, 345
AlwI	GGATC	4 cut(s)	62, 74, 199, 236
Ama87I	CYCGRG	2 cut(s)	83, 266
Aor13HI	TCCGGA	2 cut(s)	188, 225
AoxI	GGCC	3 cut(s)	385, 408, 472
ApeKI	GCWGC	2 cut(s)	164, 497
ApoI	RAATTY	2 cut(s)	100, 144
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	3 cut(s)	134, 318, 408
AsuHPI	GGTGA	2 cut(s)	145, 430
AvaI	CYCGRG	2 cut(s)	83, 266
AvaII	GGWCC	2 cut(s)	134, 318
BauI	CACGAG	2 cut(s)	15, 174
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	5 cut(s)	377, 386, 415, 464, 473
BceAI	ACGGC	4 cut(s)	309, 322, 372, 459
BcoDI	GTCTC	2 cut(s)	269, 345
BglI	GCCNNNNNGGC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	165, 411, 498
BlsI	GCNGC	3 cut(s)	166, 412, 499
Bme18I	GGWCC	2 cut(s)	134, 318
BmeT110I	CYCGRG	2 cut(s)	83, 266
BmgT120I	GGNCC	3 cut(s)	134, 318, 408
BmiI	GGNNCC	4 cut(s)	305, 347, 409, 441
BmsI	GCATC	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	84, 279
BsaWI	WCCGGW	4 cut(s)	131, 155, 188, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 209, 210, 449
Bse1I	ACTGG	1 cut(s)	321
BseAI	TCCGGA	2 cut(s)	188, 225
BseDI	CCNNGG	2 cut(s)	84, 279
BseLI	CCNNNNNNNGG	4 cut(s)	188, 209, 210, 449
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	2 cut(s)	101, 345
BseXI	GCAGC	1 cut(s)	151
Bsh1236I	CGCG	3 cut(s)	184, 210, 335
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	3 cut(s)	387, 410, 474
BsiEI	CGRYCG	1 cut(s)	65
BsiHKCI	CYCGRG	2 cut(s)	83, 266
BsiSI	CCGG	4 cut(s)	132, 156, 189, 226
BslI	CCNNNNNNNGG	4 cut(s)	188, 209, 210, 449
BsmAI	GTCTC	2 cut(s)	269, 345
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	387, 410, 474
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	2 cut(s)	83, 266
Bsp13I	TCCGGA	2 cut(s)	188, 225
Bsp143I	GATC	7 cut(s)	54, 62, 79, 191, 228, 350, 402
BspACI	CCGC	7 cut(s)	35, 182, 210, 398, 411, 427, 485
BspANI	GGCC	3 cut(s)	387, 410, 474
BspEI	TCCGGA	2 cut(s)	188, 225
BspFNI	CGCG	3 cut(s)	184, 210, 335
BspLI	GGNNCC	4 cut(s)	305, 347, 409, 441
BspPI	GGATC	4 cut(s)	62, 74, 199, 236
BspTNI	GGTCTC	1 cut(s)	269
BsrBI	CCGCTC	3 cut(s)	398, 427, 485
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	84, 279
BssMI	GATC	7 cut(s)	54, 62, 79, 191, 228, 350, 402
BssNI	GRCGYC	1 cut(s)	284
BssSI	CACGAG	2 cut(s)	15, 174
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	2 cut(s)	15, 174
Bst4CI	ACNGT	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	284
BstFNI	CGCG	3 cut(s)	184, 210, 335
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	7 cut(s)	57, 65, 82, 194, 231, 353, 405
BstMAI	GTCTC	2 cut(s)	269, 345
BstMBI	GATC	7 cut(s)	54, 62, 79, 191, 228, 350, 402
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 343
BstNSI	RCATGY	2 cut(s)	114, 459
BstUI	CGCG	3 cut(s)	184, 210, 335
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	54, 79
BstYI	RGATCY	2 cut(s)	54, 79
BsuRI	GGCC	3 cut(s)	387, 410, 474
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	134, 318, 408
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	3 cut(s)	123, 372, 459
CviAII	CATG	2 cut(s)	111, 456
CviJI	RGCY	8 cut(s)	164, 296, 304, 346, 387, 410, 474, 500
CviKI_1	RGCY	8 cut(s)	164, 296, 304, 346, 387, 410, 474, 500
CviQI	GTAC	3 cut(s)	123, 372, 459
DpnI	GATC	7 cut(s)	56, 64, 81, 193, 230, 352, 404
DpnII	GATC	7 cut(s)	54, 62, 79, 191, 228, 350, 402
EaeI	YGGCCR	2 cut(s)	385, 472
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	134, 318
Eco88I	CYCGRG	2 cut(s)	83, 266
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	2 cut(s)	114, 459
FaiI	YATR	5 cut(s)	112, 121, 240, 378, 457
FatI	CATG	2 cut(s)	110, 455
FauI	CCCGC	2 cut(s)	189, 203
Fnu4HI	GCNGC	3 cut(s)	165, 411, 498
Fsp4HI	GCNGC	3 cut(s)	165, 411, 498
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	3 cut(s)	165, 411, 498
HaeIII	GGCC	3 cut(s)	387, 410, 474
HapII	CCGG	4 cut(s)	132, 156, 189, 226
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	337
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	2 cut(s)	114, 459
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	2 cut(s)	150, 271
HpaII	CCGG	4 cut(s)	132, 156, 189, 226
HphI	GGTGA	2 cut(s)	145, 430
Hpy188I	TCNGA	2 cut(s)	308, 350
Hpy188III	TCNNGA	5 cut(s)	83, 176, 189, 226, 268
Hpy99I	CGWCG	2 cut(s)	130, 295
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	14, 110, 167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 343
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	2 cut(s)	114, 459
HspAI	GCGC	1 cut(s)	335
Kpn2I	TCCGGA	2 cut(s)	188, 225
Kzo9I	GATC	7 cut(s)	54, 62, 79, 191, 228, 350, 402
LmnI	GCTCC	6 cut(s)	88, 309, 351, 395, 424, 482
LpnPI	CCDG	7 cut(s)	145, 169, 202, 239, 297, 334, 475
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	422
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	4 cut(s)	44, 113, 151, 176
MalI	GATC	7 cut(s)	56, 64, 81, 193, 230, 352, 404
MbiI	CCGCTC	3 cut(s)	398, 427, 485
MboI	GATC	7 cut(s)	54, 62, 79, 191, 228, 350, 402
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	2 cut(s)	54, 79
MluCI	AATT	4 cut(s)	9, 100, 144, 250
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	8 cut(s)	11, 79, 294, 298, 309, 366, 430, 443
MroI	TCCGGA	2 cut(s)	188, 225
MslI	CAYNNNNRTG	1 cut(s)	109
MspI	CCGG	4 cut(s)	132, 156, 189, 226
MvnI	CGCG	3 cut(s)	184, 210, 335
MwoI	GCNNNNNNNGC	2 cut(s)	170, 343
NdeII	GATC	7 cut(s)	54, 62, 79, 191, 228, 350, 402
NlaIII	CATG	2 cut(s)	114, 459
NlaIV	GGNNCC	4 cut(s)	305, 347, 409, 441
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	151, 176
NspI	RCATGY	2 cut(s)	114, 459
PciI	ACATGT	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	166, 412, 499
Ple19I	CGATCG	1 cut(s)	65
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	455
PspN4I	GGNNCC	4 cut(s)	305, 347, 409, 441
PspPI	GGNCC	3 cut(s)	134, 318, 408
PsuI	RGATCY	2 cut(s)	54, 79
PvuI	CGATCG	1 cut(s)	65
RsaI	GTAC	3 cut(s)	124, 373, 460
RsaNI	GTAC	3 cut(s)	123, 372, 459
RseI	CAYNNNNRTG	1 cut(s)	109
SatI	GCNGC	3 cut(s)	165, 411, 498
Sau3AI	GATC	7 cut(s)	54, 62, 79, 191, 228, 350, 402
Sau96I	GGNCC	3 cut(s)	134, 318, 408
SchI	GAGTC	1 cut(s)	159
SetI	ASST	7 cut(s)	43, 71, 128, 166, 377, 464, 502
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	2 cut(s)	134, 318
SmiMI	CAYNNNNRTG	1 cut(s)	109
Sse9I	AATT	4 cut(s)	9, 100, 144, 250
SsiI	CCGC	7 cut(s)	35, 182, 210, 398, 411, 427, 485
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	5 cut(s)	61, 65, 148, 290, 363
TasI	AATT	4 cut(s)	9, 100, 144, 250
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	151, 176
TseI	GCWGC	2 cut(s)	164, 497
Tsp45I	GTSAC	2 cut(s)	151, 176
TspDTI	ATGAA	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	134, 318
XapI	RAATTY	2 cut(s)	100, 144
XceI	RCATGY	2 cut(s)	114, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.