Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

24457200 .. 24460956

Gene Structure 3757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG243100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGACCCGCCCAAGCCCACCGACAACCCCCAGACTCAGGCCCCCGCCGCCGATGCTCAGAACGGCGACAAGAATTGGGCCACCTTCGTCATGCAATCGTCGGAGCCCCCGCCGCAGCCGCAGCCGCAGCCCGAGCCGACGGCCAAGAGATCGGTCCACTGGAGCCCCGAATTGGTTACGCAATCCACTTTCAGCAATACAATCCCCGTGCACGATTCGAACCAGGGATCGAGTGCTTACGCCGGTCAATCTCCGGGGTTGACCTCCTCTTTCTCATTCAAAGATTCGGTGGAGTCTGTACGGAATGTGTTGGGGAGATGGACAAAGTCGGTGGGGGAAGCTACGAGGAAGGCTGAGGATCTCGCCGGAAACACGTGGCAGCACTTGAAAACAAGCCCTAGTCTTGCGGATGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTTCTAGCAGAAGGTGGTTACGAGAGGATCTTTCGATCAACTTTTGAGACAGTTCCTGAGGAGCAGCTTCAGAATTCATTTGCATGTTACTTGTCTACGTCAGCAGGTCCGGTCATGGGAGTTTTATATGTATCTTCTGCAAAGGTTGTTTATTGTAGTGATAATCCCATATCCTACAAAGCTGATAACCAAACTGAATGGAGTTATTATAAGGTTAGTTTGCATGTGAATTTACTGTTGTGTCTTTTGAAAATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

234

Amino Acids

25.55

Weight (kDa)

5.81

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	158 - 204	3.8e-07	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
Acc36I	ACCTGC	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	539
AciI	CCGC	8 cut(s)	8, 45, 48, 110, 113, 119, 125, 407
AclWI	GGATC	3 cut(s)	235, 366, 479
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	3 cut(s)	517, 673, 696
AcuI	CTGAAG	1 cut(s)	497
AcvI	CACGTG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	37, 172, 560
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	280, 388, 694
AjnI	CCWGG	1 cut(s)	222
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
AluBI	AGCT	3 cut(s)	341, 511, 626
AluI	AGCT	3 cut(s)	341, 511, 626
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	485
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	3 cut(s)	235, 366, 479
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	3 cut(s)	39, 78, 141
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	6 cut(s)	115, 121, 127, 379, 413, 508
ApoI	RAATTY	3 cut(s)	517, 673, 696
Asp700I	GAANNNNTTC	1 cut(s)	698
AspS9I	GGNCC	5 cut(s)	4, 40, 78, 154, 551
AsuC2I	CCSGG	1 cut(s)	255
AsuII	TTCGAA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	3 cut(s)	4, 154, 551
AxyI	CCTNAGG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	108, 167
BbrPI	CACGTG	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	6 cut(s)	127, 133, 139, 391, 400, 520
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	2 cut(s)	79, 156
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	2 cut(s)	399, 449
BfuAI	ACCTGC	1 cut(s)	539
Bme1390I	CCNGG	2 cut(s)	224, 255
Bme18I	GGWCC	3 cut(s)	4, 154, 551
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	5 cut(s)	4, 40, 78, 154, 551
BmiI	GGNNCC	4 cut(s)	6, 42, 105, 164
BmrFI	CCNGG	2 cut(s)	224, 255
BmsI	GCATC	2 cut(s)	43, 400
BpmI	CTGGAG	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	223, 254, 417
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 172, 560
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	164
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	3 cut(s)	223, 254, 417
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	3 cut(s)	37, 172, 560
BseMII	CTCAG	4 cut(s)	50, 71, 345, 492
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	2 cut(s)	256, 518
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	6 cut(s)	127, 133, 139, 391, 400, 520
BshFI	GGCC	3 cut(s)	41, 80, 143
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	4 cut(s)	243, 254, 366, 554
BslI	CCNNNNNNNGG	3 cut(s)	37, 172, 560
BsmAI	GTCTC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	41, 80, 143
BsoBI	CYCGRG	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	3 cut(s)	108, 167, 213
Bsp143I	GATC	5 cut(s)	149, 227, 358, 471, 479
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	8 cut(s)	8, 45, 48, 110, 113, 119, 125, 407
BspANI	GGCC	3 cut(s)	41, 80, 143
BspCNI	CTCAG	4 cut(s)	49, 70, 346, 493
BspLI	GGNNCC	4 cut(s)	6, 42, 105, 164
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	3 cut(s)	235, 366, 479
BspT104I	TTCGAA	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	223, 254, 417
BssMI	GATC	5 cut(s)	149, 227, 358, 471, 479
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	496, 681
BstBAI	YACGTR	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	36, 57, 354, 501
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	5 cut(s)	152, 230, 361, 474, 482
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	5 cut(s)	149, 227, 358, 471, 479
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 53, 112, 118, 121, 124, 127, 133, 413
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	531, 671
BstSCI	CCNGG	2 cut(s)	222, 253
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	6 cut(s)	127, 133, 139, 391, 400, 520
BstX2I	RGATCY	2 cut(s)	358, 471
BstYI	RGATCY	2 cut(s)	358, 471
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	41, 80, 143
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	539
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	5 cut(s)	4, 40, 78, 154, 551
Csp6I	GTAC	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	5 cut(s)	91, 418, 528, 559, 668
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	4 cut(s)	36, 57, 354, 501
DpnI	GATC	5 cut(s)	151, 229, 360, 473, 481
DpnII	GATC	5 cut(s)	149, 227, 358, 471, 479
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	108, 167
Eco47I	GGWCC	3 cut(s)	4, 154, 551
Eco57I	CTGAAG	1 cut(s)	497
Eco72I	CACGTG	1 cut(s)	375
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	108, 167
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	5 cut(s)	94, 421, 531, 562, 671
FaiI	YATR	9 cut(s)	92, 419, 529, 560, 571, 573, 614, 654, 669
FatI	CATG	5 cut(s)	90, 417, 527, 558, 667
FauI	CCCGC	3 cut(s)	15, 52, 117
FblI	GTMKAC	1 cut(s)	539
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	2 cut(s)	108, 167
FspBI	CTAG	2 cut(s)	399, 449
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	41, 80, 143
HapII	CCGG	4 cut(s)	243, 254, 366, 554
Hin1II	CATG	5 cut(s)	94, 421, 531, 562, 671
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	34, 215, 284, 293
HpaII	CCGG	4 cut(s)	243, 254, 366, 554
Hpy166II	GTNNAC	4 cut(s)	157, 211, 261, 540
Hpy188I	TCNGA	4 cut(s)	60, 103, 516, 704
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	4 cut(s)	157, 211, 261, 540
Hpy99I	CGWCG	2 cut(s)	103, 142
HpyAV	CCTTC	3 cut(s)	94, 343, 449
HpyCH4III	ACNGT	2 cut(s)	496, 681
HpyCH4IV	ACGT	2 cut(s)	374, 542
HpyCH4V	TGCA	6 cut(s)	94, 211, 431, 527, 584, 667
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 53, 112, 118, 121, 124, 127, 133, 413
HpyF3I	CTNAG	4 cut(s)	36, 57, 354, 501
HpySE526I	ACGT	2 cut(s)	374, 542
Hsp92II	CATG	5 cut(s)	94, 421, 531, 562, 671
Kzo9I	GATC	5 cut(s)	149, 227, 358, 471, 479
LmnI	GCTCC	3 cut(s)	103, 162, 505
Lsp1109I	GCAGC	6 cut(s)	127, 133, 139, 391, 400, 520
LweI	GCATC	2 cut(s)	43, 400
MaeI	CTAG	2 cut(s)	399, 449
MaeII	ACGT	2 cut(s)	374, 542
MaeIII	GTNAC	3 cut(s)	175, 461, 530
MalI	GATC	5 cut(s)	151, 229, 360, 473, 481
MboI	GATC	5 cut(s)	149, 227, 358, 471, 479
MboII	GAAGA	2 cut(s)	435, 570
MflI	RGATCY	2 cut(s)	358, 471
MhlI	GDGCHC	3 cut(s)	108, 167, 213
MluCI	AATT	6 cut(s)	73, 170, 426, 517, 673, 696
MlyI	GAGTC	2 cut(s)	28, 302
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	274, 277, 339, 349, 462, 496
MroXI	GAANNNNTTC	1 cut(s)	698
MslI	CAYNNNNRTG	1 cut(s)	526
MspI	CCGG	4 cut(s)	243, 254, 366, 554
MspR9I	CCNGG	2 cut(s)	224, 255
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	9 cut(s)	47, 53, 112, 118, 121, 124, 127, 133, 413
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	5 cut(s)	149, 227, 358, 471, 479
NlaIII	CATG	5 cut(s)	94, 421, 531, 562, 671
NlaIV	GGNNCC	4 cut(s)	6, 42, 105, 164
NspI	RCATGY	2 cut(s)	531, 671
NspV	TTCGAA	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	215, 284
PflFI	GACNNNGTC	1 cut(s)	325
PleI	GAGTC	2 cut(s)	28, 301
PmaCI	CACGTG	1 cut(s)	375
PmlI	CACGTG	1 cut(s)	375
PpsI	GAGTC	2 cut(s)	28, 301
Ppu21I	YACGTR	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	222
PspCI	CACGTG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	4 cut(s)	6, 42, 105, 164
PspPI	GGNCC	5 cut(s)	4, 40, 78, 154, 551
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	358, 471
PsyI	GACNNNGTC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	526
Sau3AI	GATC	5 cut(s)	149, 227, 358, 471, 479
Sau96I	GGNCC	5 cut(s)	4, 40, 78, 154, 551
SchI	GAGTC	2 cut(s)	28, 302
ScrFI	CCNGG	2 cut(s)	224, 255
SduI	GDGCHC	3 cut(s)	108, 167, 213
SfaNI	GCATC	2 cut(s)	43, 400
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	3 cut(s)	4, 154, 551
SmiMI	CAYNNNNRTG	1 cut(s)	526
Sse9I	AATT	6 cut(s)	73, 170, 426, 517, 673, 696
SsiI	CCGC	8 cut(s)	8, 45, 48, 110, 113, 119, 125, 407
SspMI	CTAG	2 cut(s)	399, 449
StyD4I	CCNGG	2 cut(s)	222, 253
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	496, 681
TaiI	ACGT	2 cut(s)	377, 545
TaqI	TCGA	3 cut(s)	218, 230, 478
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	6 cut(s)	73, 170, 426, 517, 673, 696
TauI	GCSGC	4 cut(s)	50, 115, 121, 127
TfiI	GAWTC	2 cut(s)	215, 284
TscAI	CASTG	1 cut(s)	164
TseI	GCWGC	6 cut(s)	115, 121, 127, 379, 413, 508
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	1 cut(s)	164
Tth111I	GACNNNGTC	1 cut(s)	325
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	4, 154, 551
XapI	RAATTY	3 cut(s)	517, 673, 696
XceI	RCATGY	2 cut(s)	531, 671
XmiI	GTMKAC	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	2 cut(s)	399, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.