Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

32450698 .. 32454533

Gene Structure 3836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1316400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATCCGCCCAAGCCCACCACCGAGGCCGACGCCAAAACGCACACTCCGGCCGCCCAGGATCCGAACCCGAAAGCCGCAGCCCAAGCTCCGAACGGGGATAGGAACTGGGCGAGCTTCGTGACGGCCTCGCAGGCTCAGGCTCAACCGACTTCGACGGAGGCGGTCTCCACCCCCACGGGTTCGGGGTCGAAGAAATCGGTTCATTGGAACCCGGAATTGGTGTCGGAGTCCCACAATACTGCCGCTGCGTCGGATCATTCTTCCCATCAGGGATCCAATCCCTACGTGGCTCCCTCCCCTATGCTCTCACAATCTTTCTCATTCAAAGATTCGGTGGACACTGTACGGAACGTGTTTGGGAGATGGAGGAAGTCGGTGGGGGAGGCTACTAAGAAGGCGGAGGATCTCGCTGGAAACACGTGGCAGCACTTAAAAACAAGCCCCAGTTTCGCTGACGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTCCTTGCAGAAGGTGGTTACGAGAAGATCTTTCGATCAACTTTTGAGACAACTCCCGAGGAGCAACTTCAAAATTCATTTGCATGCTACTTGTCCACATCAGCTGGTCCAGTCATGGGAGTTTTATATGTTTCTACTGCAAAACTTGCCTATTGTAGTGATAATCCCATTTCATACAAAGCTGAGAGCCAAACTGAATGGAGCTATTACAAGGTGGTTATCCCGTTACATCAGCTTAAAGCAGTTAATCCTTCATCAAGTAGATCCAATCCTGCTGAAAAGTACATTCAGGTTATCTCCGTCGATAACCATGAGTTCTGGTTTATGGGATTCTTAAATTACGATGGCGCAGCCAACTGCCTACAAGAAGCTCTCCATGCGCGGAGCTCATCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

297

Amino Acids

32.03

Weight (kDa)

6.3

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	174 - 291	2.5e-18	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	874
AciI	CCGC	7 cut(s)	8, 54, 78, 164, 246, 401, 874
AclWI	GGATC	8 cut(s)	12, 56, 69, 264, 270, 283, 414, 750
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	565
AcvI	CACGTG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	348, 776
AfiI	CCNNNNNNNGG	2 cut(s)	220, 608
AflIII	ACRYGT	2 cut(s)	354, 420
AgsI	TTSAA	2 cut(s)	328, 563
AjnI	CCWGG	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	8 cut(s)	89, 117, 596, 674, 696, 727, 863, 879
AluI	AGCT	8 cut(s)	89, 117, 596, 674, 696, 727, 863, 879
Alw21I	GWGCWC	1 cut(s)	881
Alw26I	GTCTC	2 cut(s)	172, 533
AlwI	GGATC	8 cut(s)	12, 56, 69, 264, 270, 283, 414, 750
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	3 cut(s)	27, 51, 126
ApeKI	GCWGC	5 cut(s)	80, 248, 427, 461, 842
ApoI	RAATTY	1 cut(s)	565
AspLEI	GCGC	2 cut(s)	842, 874
AspS9I	GGNCC	2 cut(s)	493, 599
AsuC2I	CCSGG	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	2 cut(s)	493, 599
BamHI	GGATCC	3 cut(s)	4, 61, 275
BanII	GRGCYC	1 cut(s)	881
BbrPI	CACGTG	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	881
BbvI	GCAGC	5 cut(s)	92, 235, 439, 448, 854
BccI	CCATC	3 cut(s)	276, 360, 830
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	172, 533
BglI	GCCNNNNNGGC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	8 cut(s)	54, 78, 81, 246, 249, 428, 462, 843
BlsI	GCNGC	8 cut(s)	55, 79, 82, 247, 250, 429, 463, 844
Bme1390I	CCNGG	2 cut(s)	59, 215
Bme18I	GGWCC	2 cut(s)	493, 599
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	493, 599
BmiI	GGNNCC	5 cut(s)	6, 63, 212, 277, 294
BmrFI	CCNGG	2 cut(s)	59, 215
BmrI	ACTGGG	2 cut(s)	118, 441
BmuI	ACTGGG	2 cut(s)	118, 441
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu10I	CCTNAGC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	2 cut(s)	289, 423
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	5 cut(s)	24, 57, 177, 465, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 608
Bse1I	ACTGG	3 cut(s)	113, 447, 602
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	5 cut(s)	24, 57, 177, 465, 549
BseLI	CCNNNNNNNGG	2 cut(s)	220, 608
BseMII	CTCAG	2 cut(s)	152, 666
BseNI	ACTGG	3 cut(s)	113, 447, 602
BseRI	GAGGAG	1 cut(s)	566
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	5 cut(s)	92, 235, 439, 448, 854
Bsh1236I	CGCG	1 cut(s)	874
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	29, 53, 128
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	881
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	50, 215
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	220, 608
BsmAI	GTCTC	2 cut(s)	172, 533
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	3 cut(s)	29, 53, 128
Bso31I	GGTCTC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp143I	GATC	8 cut(s)	4, 61, 256, 275, 406, 519, 527, 755
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	7 cut(s)	8, 54, 78, 164, 246, 401, 874
BspANI	GGCC	3 cut(s)	29, 53, 128
BspCNI	CTCAG	2 cut(s)	151, 667
BspFNI	CGCG	1 cut(s)	874
BspLI	GGNNCC	5 cut(s)	6, 63, 212, 277, 294
BspPI	GGATC	8 cut(s)	12, 56, 69, 264, 270, 283, 414, 750
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	113, 447, 602
BssECI	CCNNGG	5 cut(s)	24, 57, 177, 465, 549
BssMI	GATC	8 cut(s)	4, 61, 256, 275, 406, 519, 527, 755
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstBAI	YACGTR	2 cut(s)	289, 423
BstC8I	GCNNGC	3 cut(s)	115, 135, 577
BstDEI	CTNAG	3 cut(s)	138, 393, 675
BstDSI	CCRYGG	2 cut(s)	177, 465
BstFNI	CGCG	1 cut(s)	874
BstHHI	GCGC	2 cut(s)	842, 874
BstKTI	GATC	8 cut(s)	7, 64, 259, 278, 409, 522, 530, 758
BstMAI	GTCTC	2 cut(s)	172, 533
BstMBI	GATC	8 cut(s)	4, 61, 256, 275, 406, 519, 527, 755
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 134, 461, 638, 869
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	57, 213
BstUI	CGCG	1 cut(s)	874
BstV1I	GCAGC	5 cut(s)	92, 235, 439, 448, 854
BstX2I	RGATCY	6 cut(s)	4, 61, 275, 406, 519, 755
BstYI	RGATCY	6 cut(s)	4, 61, 275, 406, 519, 755
BstZI	CGGCCG	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	29, 53, 128
BtgI	CCRYGG	2 cut(s)	177, 465
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	115, 135, 577
CfoI	GCGC	2 cut(s)	842, 874
Cfr13I	GGNCC	2 cut(s)	493, 599
CseI	GACGC	3 cut(s)	41, 240, 467
Csp6I	GTAC	2 cut(s)	347, 775
CviAII	CATG	5 cut(s)	466, 576, 607, 803, 869
CviQI	GTAC	2 cut(s)	347, 775
DdeI	CTNAG	3 cut(s)	138, 393, 675
DpnI	GATC	8 cut(s)	6, 63, 258, 277, 408, 521, 529, 757
DpnII	GATC	8 cut(s)	4, 61, 256, 275, 406, 519, 527, 755
EaeI	YGGCCR	1 cut(s)	51
EagI	CGGCCG	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	416
Ecl136II	GAGCTC	1 cut(s)	879
EclXI	CGGCCG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	881
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	493, 599
Eco52I	CGGCCG	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	879
Eco72I	CACGTG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	879
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	881
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	5 cut(s)	469, 579, 610, 806, 872
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	5 cut(s)	465, 575, 606, 802, 868
Fnu4HI	GCNGC	8 cut(s)	54, 78, 81, 246, 249, 428, 462, 843
FriOI	GRGCYC	1 cut(s)	881
Fsp4HI	GCNGC	8 cut(s)	54, 78, 81, 246, 249, 428, 462, 843
GlaI	GCGC	2 cut(s)	841, 873
GluI	GCNGC	8 cut(s)	54, 78, 81, 246, 249, 428, 462, 843
HaeIII	GGCC	3 cut(s)	29, 53, 128
HapII	CCGG	2 cut(s)	50, 215
HgaI	GACGC	3 cut(s)	41, 240, 467
HhaI	GCGC	2 cut(s)	842, 874
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	469, 579, 610, 806, 872
Hin6I	GCGC	2 cut(s)	840, 872
HinP1I	GCGC	2 cut(s)	840, 872
HinfI	GANTC	3 cut(s)	230, 332, 822
HpaII	CCGG	2 cut(s)	50, 215
Hpy166II	GTNNAC	2 cut(s)	340, 588
Hpy188I	TCNGA	4 cut(s)	66, 93, 229, 256
Hpy188III	TCNNGA	2 cut(s)	121, 548
Hpy8I	GTNNAC	2 cut(s)	340, 588
Hpy99I	CGWCG	4 cut(s)	35, 160, 256, 797
HpyAV	CCTTC	3 cut(s)	391, 497, 753
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	3 cut(s)	288, 354, 422
HpyCH4V	TGCA	4 cut(s)	479, 500, 575, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 134, 461, 638, 869
HpyF3I	CTNAG	3 cut(s)	138, 393, 675
HpySE526I	ACGT	3 cut(s)	288, 354, 422
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	469, 579, 610, 806, 872
HspAI	GCGC	2 cut(s)	840, 872
Kzo9I	GATC	8 cut(s)	4, 61, 256, 275, 406, 519, 527, 755
LmnI	GCTCC	5 cut(s)	94, 298, 553, 693, 876
Lsp1109I	GCAGC	5 cut(s)	92, 235, 439, 448, 854
MaeII	ACGT	3 cut(s)	288, 354, 422
MaeIII	GTNAC	3 cut(s)	121, 509, 717
MalI	GATC	8 cut(s)	6, 63, 258, 277, 408, 521, 529, 757
MboI	GATC	8 cut(s)	4, 61, 256, 275, 406, 519, 527, 755
MboII	GAAGA	4 cut(s)	205, 255, 483, 529
MflI	RGATCY	6 cut(s)	4, 61, 275, 406, 519, 755
MhlI	GDGCHC	1 cut(s)	881
MluCI	AATT	4 cut(s)	218, 474, 565, 829
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	207, 234
MnlI	CCTC	8 cut(s)	19, 139, 154, 307, 363, 379, 397, 544
MseI	TTAA	4 cut(s)	434, 729, 738, 827
MslI	CAYNNNNRTG	1 cut(s)	574
MspA1I	CMGCKG	2 cut(s)	248, 596
MspI	CCGG	2 cut(s)	50, 215
MspR9I	CCNGG	2 cut(s)	59, 215
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	874
MwoI	GCNNNNNNNGC	5 cut(s)	86, 134, 461, 638, 869
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	8 cut(s)	4, 61, 256, 275, 406, 519, 527, 755
NlaIII	CATG	5 cut(s)	469, 579, 610, 806, 872
NlaIV	GGNNCC	5 cut(s)	6, 63, 212, 277, 294
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	579
PaeI	GCATGC	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	332, 822
PkrI	GCNGC	8 cut(s)	55, 79, 82, 247, 250, 429, 463, 844
PleI	GAGTC	1 cut(s)	238
PmaCI	CACGTG	1 cut(s)	423
PmlI	CACGTG	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	2 cut(s)	289, 423
PpuMI	RGGWCCY	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	57
PspCI	CACGTG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	5 cut(s)	6, 63, 212, 277, 294
PspPI	GGNCC	2 cut(s)	493, 599
PspPPI	RGGWCCY	1 cut(s)	493
PsuI	RGATCY	6 cut(s)	4, 61, 275, 406, 519, 755
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	348, 776
RsaNI	GTAC	2 cut(s)	347, 775
RseI	CAYNNNNRTG	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	881
SaqAI	TTAA	4 cut(s)	434, 729, 738, 827
SatI	GCNGC	8 cut(s)	54, 78, 81, 246, 249, 428, 462, 843
Sau3AI	GATC	8 cut(s)	4, 61, 256, 275, 406, 519, 527, 755
Sau96I	GGNCC	2 cut(s)	493, 599
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	59, 215
SduI	GDGCHC	1 cut(s)	881
SinI	GGWCC	2 cut(s)	493, 599
SmiMI	CAYNNNNRTG	1 cut(s)	574
SphI	GCATGC	1 cut(s)	579
Sse9I	AATT	4 cut(s)	218, 474, 565, 829
SsiI	CCGC	7 cut(s)	8, 54, 78, 164, 246, 401, 874
SstI	GAGCTC	1 cut(s)	881
StyD4I	CCNGG	2 cut(s)	57, 213
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	3 cut(s)	291, 357, 425
TaqI	TCGA	4 cut(s)	155, 191, 526, 795
TasI	AATT	4 cut(s)	218, 474, 565, 829
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	3 cut(s)	56, 80, 248
TfiI	GAWTC	2 cut(s)	332, 822
Tru1I	TTAA	4 cut(s)	434, 729, 738, 827
Tru9I	TTAA	4 cut(s)	434, 729, 738, 827
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	5 cut(s)	80, 248, 427, 461, 842
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	4 cut(s)	194, 558, 654, 735
TspGWI	ACGGA	3 cut(s)	173, 364, 781
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	493, 599
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.