Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

11242306 .. 11242984

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G005630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCAGTATGCACCAGTGCTAAGTCCATCTTTCTCCTTCGAAGGTTCTGTGAAGACCGTATGGAATGCATTTGGGACATTGAGAAAGTCCGTCGGGGAAGCTACAAAGAAGTCTGTGGATATCTCCGGAAACACGTGGATCTTTCGATCGACCTTTGAGATAGATCCTGAGGAGCAACTTCAAAATTCACTTGCATGTTACTTATGTACGTCGTCCGGTCCAGTAATGGGATCGTTATATATGGTCATCCCATTGCATCAGCTTAAATCAGTTAATTCTTCGTTAAGCAGATTCAATCCTGGTGAAAAGTACATACAGATTATCTCAACTGATAACCATGAATTTTGGTTTATGGGGGTTCTTAAATTATTACGGTGCTGTTCAATGCCTACAAGGAGCTCTACATTCCCCGTGCATATATATCCGTGGGATAATTTTTGTAGTTGTGCACTTGTGCAGACTTCTTCCGTTGAGCCCGTGGTCAGATATAAGATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

166

Amino Acids

18.73

Weight (kDa)

8.22

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	125
AclWI	GGATC	3 cut(s)	146, 158, 238
AcsI	RAATTY	2 cut(s)	184, 341
AcvI	CACGTG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	208, 311
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	182, 295, 384
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	101, 262, 399
AluI	AGCT	3 cut(s)	101, 262, 399
Alw21I	GWGCWC	2 cut(s)	401, 451
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	3 cut(s)	146, 158, 238
Aor13HI	TCCGGA	1 cut(s)	125
ApaLI	GTGCAC	1 cut(s)	447
ApoI	RAATTY	2 cut(s)	184, 341
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	218
AxyI	CCTNAGG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	451
BanII	GRGCYC	2 cut(s)	401, 477
BbrPI	CACGTG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	401, 451
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	425, 477
BsaWI	WCCGGW	2 cut(s)	125, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	14, 221
Bse21I	CCTNAGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	251
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	425, 477
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	14, 221
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	401, 451
BsiSI	CCGG	2 cut(s)	126, 216
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	3 cut(s)	401, 451, 477
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	138, 146, 163, 230
BspCNI	CTCAG	1 cut(s)	160
BspEI	TCCGGA	1 cut(s)	125
BspPI	GGATC	3 cut(s)	146, 158, 238
BspT104I	TTCGAA	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	14, 221
BssECI	CCNNGG	2 cut(s)	425, 477
BssMI	GATC	4 cut(s)	138, 146, 163, 230
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	58, 375
BstBAI	YACGTR	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	20, 168
BstDSI	CCRYGG	2 cut(s)	425, 477
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	4 cut(s)	141, 149, 166, 233
BstMBI	GATC	4 cut(s)	138, 146, 163, 230
BstMCI	CGRYCG	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	138, 163
BstYI	RGATCY	2 cut(s)	138, 163
Bsu36I	CCTNAGG	1 cut(s)	168
BtgI	CCRYGG	2 cut(s)	425, 477
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	207, 310
CviAII	CATG	2 cut(s)	195, 338
CviJI	RGCY	4 cut(s)	101, 262, 399, 475
CviKI_1	RGCY	4 cut(s)	101, 262, 399, 475
CviQI	GTAC	2 cut(s)	207, 310
DdeI	CTNAG	2 cut(s)	20, 168
DpnI	GATC	4 cut(s)	140, 148, 165, 232
DpnII	GATC	4 cut(s)	138, 146, 163, 230
Ecl136II	GAGCTC	1 cut(s)	399
Eco24I	GRGCYC	2 cut(s)	401, 477
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	399
Eco72I	CACGTG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	2 cut(s)	401, 477
FaeI	CATG	2 cut(s)	198, 341
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	194, 337
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	2 cut(s)	401, 477
HapII	CCGG	2 cut(s)	126, 216
Hin1II	CATG	2 cut(s)	198, 341
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	126, 216
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	1 cut(s)	485
Hpy188III	TCNNGA	2 cut(s)	126, 167
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	2 cut(s)	95, 214
HpyAV	CCTTC	2 cut(s)	35, 46
HpyCH4III	ACNGT	2 cut(s)	58, 375
HpyCH4IV	ACGT	2 cut(s)	134, 209
HpyCH4V	TGCA	8 cut(s)	4, 11, 68, 194, 256, 415, 449, 457
HpyF3I	CTNAG	2 cut(s)	20, 168
HpySE526I	ACGT	2 cut(s)	134, 209
Hsp92II	CATG	2 cut(s)	198, 341
Kpn2I	TCCGGA	1 cut(s)	125
Kzo9I	GATC	4 cut(s)	138, 146, 163, 230
LmnI	GCTCC	2 cut(s)	172, 396
LpnPI	CCDG	7 cut(s)	27, 139, 180, 229, 234, 285, 312
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	2 cut(s)	134, 209
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	4 cut(s)	140, 148, 165, 232
MboI	GATC	4 cut(s)	138, 146, 163, 230
MboII	GAAGA	3 cut(s)	64, 270, 456
MflI	RGATCY	2 cut(s)	138, 163
MhlI	GDGCHC	3 cut(s)	401, 451, 477
MluCI	AATT	5 cut(s)	184, 274, 341, 365, 433
MnlI	CCTC	1 cut(s)	163
Mph1103I	ATGCAT	1 cut(s)	70
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	4 cut(s)	264, 273, 284, 363
MslI	CAYNNNNRTG	1 cut(s)	193
MspI	CCGG	2 cut(s)	126, 216
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	300
NdeII	GATC	4 cut(s)	138, 146, 163, 230
NlaIII	CATG	2 cut(s)	198, 341
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	39
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	291
Ple19I	CGATCG	1 cut(s)	149
PmaCI	CACGTG	1 cut(s)	135
PmlI	CACGTG	1 cut(s)	135
Ppu21I	YACGTR	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	298
PspCI	CACGTG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	138, 163
PvuI	CGATCG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	208, 311
RsaNI	GTAC	2 cut(s)	207, 310
RseI	CAYNNNNRTG	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	264, 273, 284, 363
Sau3AI	GATC	4 cut(s)	138, 146, 163, 230
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	3 cut(s)	401, 451, 477
SetI	ASST	7 cut(s)	46, 103, 137, 155, 212, 264, 401
SfaNI	GCATC	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	5 cut(s)	184, 274, 341, 365, 433
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	58, 375
TaiI	ACGT	2 cut(s)	137, 212
TaqI	TCGA	3 cut(s)	39, 145, 149
TasI	AATT	5 cut(s)	184, 274, 341, 365, 433
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	4 cut(s)	264, 273, 284, 363
Tru9I	TTAA	4 cut(s)	264, 273, 284, 363
TscAI	CASTG	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	3 cut(s)	79, 414, 457
TspRI	CASTG	1 cut(s)	21
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	2 cut(s)	184, 341
XceI	RCATGY	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.