Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

6803613 .. 6803887

Gene Structure 275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGTGGTGTATTAGAGTGGTTATCCCGTTACATCAGCTTAAAGCAGTCAATCCATCGTCAAGCAGATCGAACCCTGCTGAAAAGTACATTCAGGTTATCTCCGTTGATAACCATGAGTTCTGGTTTATGGGATTCTTAAATTATGATGGTGCCGTCATTTGCCTACAAGAAGCTCTCCAAGCTCGGAACTCATCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

67

Amino Acids

7.52

Weight (kDa)

6.7

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	2 - 63	1.2e-07	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	86
AluBI	AGCT	3 cut(s)	37, 173, 182
AluI	AGCT	3 cut(s)	37, 173, 182
BanI	GGYRCC	1 cut(s)	149
BccI	CCATC	2 cut(s)	61, 140
BceAI	ACGGC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	149
BssMI	GATC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	3 cut(s)	37, 173, 182
CviKI_1	RGCY	3 cut(s)	37, 173, 182
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
FaeI	CATG	1 cut(s)	116
FaiI	YATR	3 cut(s)	114, 128, 144
FatI	CATG	1 cut(s)	112
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	65
LpnPI	CCDG	3 cut(s)	77, 87, 106
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MluCI	AATT	1 cut(s)	139
MseI	TTAA	2 cut(s)	39, 137
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	39, 137
Sau3AI	GATC	1 cut(s)	65
SetI	ASST	4 cut(s)	39, 96, 175, 184
SgeI	CNNG	9 cut(s)	37, 72, 86, 104, 125, 133, 179, 191, 195
Sse9I	AATT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	139
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	39, 137
Tru9I	TTAA	2 cut(s)	39, 137
TspGWI	ACGGA	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.