Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

57248517 .. 57249166

Gene Structure 650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCTGAATCGCAACAGGGATCCAGTCCTTACGTGGCTCACTATGCCCCAGTGCTAAGTCTAACTTTCTCCTCCGAAGGTTCTTCCGTCGGGGAAGCTACAAAGAAGGCTATGGATATCACCGGAAAAATGTGGCAGCACTTGAAAACAAGCCCTGGTTTTGCTGATGCTGCCATGGGAAGAATTACACGAGGAACAAAAGTTTTAGCGGAAGGTGGTTACTATAGGATCTTTCGATCGACCTTATTTGAGATTGTTCCTGAGGAGCAACTTCAAAATTCATTTGCATGTTACTTATGTACGTCGTACAGGCCAGTAATGGGAGTGTTATATGTATCTACTGCAAAGATTGCTTACTGCAGTGATAATCCCATTTTATACAAAGCTGAAAACCAGACTGAATGTAGCTATTATAAGGTGGTTATCCCACTGCCAGATCCAATCCTGGTGAAAAGTACATACATATTAATTATTATCTCAACTGATAACCATGAATTTTGGTTTATGGGGTTCTTAAATTATTTTGGTTCTGCTCAATGCCTACAAGGCGCTCTACATGCCCGGAGCATATCCTTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

193

Amino Acids

21.39

Weight (kDa)

6.88

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	80 - 171	3.5e-06	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	4 cut(s)	15, 28, 236, 431
AcsI	RAATTY	2 cut(s)	277, 494
AfaI	GTAC	3 cut(s)	301, 308, 457
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	145, 275
AjnI	CCWGG	2 cut(s)	154, 444
AluBI	AGCT	3 cut(s)	98, 386, 408
AluI	AGCT	3 cut(s)	98, 386, 408
AlwI	GGATC	4 cut(s)	15, 28, 236, 431
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	2 cut(s)	136, 170
ApoI	RAATTY	2 cut(s)	277, 494
AseI	ATTAAT	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	112, 460
AxyI	CCTNAGG	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	148, 157
BciT130I	CCWGG	2 cut(s)	156, 446
BcnI	CCSGG	1 cut(s)	562
BfmI	CTRYAG	2 cut(s)	223, 358
BfoI	RGCGCY	1 cut(s)	552
BglI	GCCNNNNNGGC	1 cut(s)	546
BisI	GCNGC	2 cut(s)	137, 171
BlsI	GCNGC	2 cut(s)	138, 172
Bme1390I	CCNGG	3 cut(s)	156, 446, 562
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	3 cut(s)	156, 446, 562
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	562
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	154, 174, 573
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	3 cut(s)	24, 50, 314
Bse21I	CCTNAGG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	156, 446
BseDI	CCNNGG	3 cut(s)	154, 174, 573
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	3 cut(s)	24, 50, 314
BseRI	GAGGAG	2 cut(s)	61, 278
BseXI	GCAGC	2 cut(s)	148, 157
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	123, 562
BslI	CCNNNNNNNGG	1 cut(s)	320
BsnI	GGCC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	20, 228, 236, 436
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	22
BspMAI	CTGCAG	1 cut(s)	362
BspPI	GGATC	4 cut(s)	15, 28, 236, 431
BsrI	ACTGG	3 cut(s)	24, 50, 314
BssECI	CCNNGG	3 cut(s)	154, 174, 573
BssMI	GATC	4 cut(s)	20, 228, 236, 436
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	174, 573
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	156, 446
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	56, 261
BstDSI	CCRYGG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	4 cut(s)	23, 231, 239, 439
BstMBI	GATC	4 cut(s)	20, 228, 236, 436
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 170, 350, 546, 557
BstNI	CCWGG	2 cut(s)	156, 446
BstNSI	RCATGY	2 cut(s)	291, 560
BstSCI	CCNGG	3 cut(s)	154, 444, 560
BstSFI	CTRYAG	2 cut(s)	223, 358
BstV1I	GCAGC	2 cut(s)	148, 157
BstX2I	RGATCY	3 cut(s)	20, 228, 436
BstYI	RGATCY	3 cut(s)	20, 228, 436
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	174
BtsI	GCAGTG	2 cut(s)	367, 428
BtsIMutI	CAGTG	3 cut(s)	57, 367, 428
CfoI	GCGC	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	300, 307, 456
CviAII	CATG	4 cut(s)	175, 288, 491, 557
CviJI	RGCY	7 cut(s)	38, 98, 110, 153, 313, 386, 408
CviKI_1	RGCY	7 cut(s)	38, 98, 110, 153, 313, 386, 408
CviQI	GTAC	3 cut(s)	300, 307, 456
DdeI	CTNAG	2 cut(s)	56, 261
DpnI	GATC	4 cut(s)	22, 230, 238, 438
DpnII	GATC	4 cut(s)	20, 228, 236, 436
Eco130I	CCWWGG	2 cut(s)	174, 573
Eco32I	GATATC	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	154, 444
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	174, 573
ErhI	CCWWGG	2 cut(s)	174, 573
FaeI	CATG	4 cut(s)	178, 291, 494, 560
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	4 cut(s)	174, 287, 490, 556
Fnu4HI	GCNGC	2 cut(s)	137, 171
Fsp4HI	GCNGC	2 cut(s)	137, 171
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	2 cut(s)	137, 171
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	2 cut(s)	123, 562
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	4 cut(s)	178, 291, 494, 560
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	2 cut(s)	123, 562
HphI	GGTGA	2 cut(s)	112, 460
Hpy188I	TCNGA	2 cut(s)	7, 76
Hpy188III	TCNNGA	1 cut(s)	260
Hpy99I	CGWCG	2 cut(s)	92, 307
HpyAV	CCTTC	3 cut(s)	71, 100, 206
HpyCH4IV	ACGT	2 cut(s)	33, 302
HpyCH4V	TGCA	3 cut(s)	287, 344, 360
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 170, 350, 546, 557
HpyF3I	CTNAG	2 cut(s)	56, 261
HpySE526I	ACGT	2 cut(s)	33, 302
Hsp92II	CATG	4 cut(s)	178, 291, 494, 560
HspAI	GCGC	1 cut(s)	549
Kzo9I	GATC	4 cut(s)	20, 228, 236, 436
LmnI	GCTCC	2 cut(s)	265, 564
Lsp1109I	GCAGC	2 cut(s)	148, 157
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	2 cut(s)	33, 302
MaeIII	GTNAC	2 cut(s)	218, 290
MalI	GATC	4 cut(s)	22, 230, 238, 438
MboI	GATC	4 cut(s)	20, 228, 236, 436
MboII	GAAGA	2 cut(s)	75, 192
MflI	RGATCY	3 cut(s)	20, 228, 436
MluCI	AATT	5 cut(s)	183, 277, 468, 494, 517
MnlI	CCTC	3 cut(s)	82, 185, 256
MseI	TTAA	2 cut(s)	467, 515
MslI	CAYNNNNRTG	1 cut(s)	286
MspI	CCGG	2 cut(s)	123, 562
MspR9I	CCNGG	3 cut(s)	156, 446, 562
MvaI	CCWGG	2 cut(s)	156, 446
MwoI	GCNNNNNNNGC	5 cut(s)	44, 170, 350, 546, 557
NciI	CCSGG	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	20, 228, 236, 436
NlaIII	CATG	4 cut(s)	178, 291, 494, 560
NlaIV	GGNNCC	1 cut(s)	22
NspI	RCATGY	2 cut(s)	291, 560
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	138, 172
Ple19I	CGATCG	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	34
PshBI	ATTAAT	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	154, 444
PspGI	CCWGG	2 cut(s)	154, 444
PspN4I	GGNNCC	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	362
PsuI	RGATCY	3 cut(s)	20, 228, 436
PvuI	CGATCG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	301, 308, 457
RsaNI	GTAC	3 cut(s)	300, 307, 456
RseI	CAYNNNNRTG	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	467, 515
SatI	GCNGC	2 cut(s)	137, 171
Sau3AI	GATC	4 cut(s)	20, 228, 236, 436
ScrFI	CCNGG	3 cut(s)	156, 446, 562
SetI	ASST	9 cut(s)	36, 82, 100, 217, 245, 305, 388, 410, 420
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	2 cut(s)	223, 358
SmiMI	CAYNNNNRTG	1 cut(s)	286
Sse9I	AATT	5 cut(s)	183, 277, 468, 494, 517
SsiI	CCGC	1 cut(s)	209
StyD4I	CCNGG	3 cut(s)	154, 444, 560
StyI	CCWWGG	2 cut(s)	174, 573
TaiI	ACGT	2 cut(s)	36, 305
TaqI	TCGA	2 cut(s)	235, 239
TasI	AATT	5 cut(s)	183, 277, 468, 494, 517
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	467, 515
Tru9I	TTAA	2 cut(s)	467, 515
TscAI	CASTG	3 cut(s)	57, 367, 435
TseI	GCWGC	2 cut(s)	136, 170
TspDTI	ATGAA	2 cut(s)	270, 507
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	3 cut(s)	57, 367, 435
VspI	ATTAAT	1 cut(s)	467
XapI	RAATTY	2 cut(s)	277, 494
XceI	RCATGY	2 cut(s)	291, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.