Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

65726932 .. 65729648

Gene Structure 2717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG348900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAATGCATTTGGGACATGGAGAAAGTCCGTCGGGGAATAGCTACAAAGAAGGCTATGGATATCATCGGAAACACGTGGCAGCACTTGAAAACAAGCCCTAGTTTTGCTGATGCTGCCATGGGAAGAATTACACGAGGAACAAAAGTTTTAGCGGAAGGTGGTTACTATAGGATCTTTCAATCGACCTTTGAGATTGTTCCTGAGGAGCAACTTCAAAATTCATTTGCATGTTACTTATGTATGTCTTACAGTCCAGTAATGGGAGTGTTATATGTATCTACTGCAAAGATTGCTTATTGCAGTGATAATCCCATTTTATACAAAGCTGAAAACCAGACTGAATGTAGCTATTATAAGGTGGTTATCCCACTGCATCAGCTTAAAGCAGTTAATTCTTCGTTAAGCAGATCCAATCCTGGTGAAAAGGTATATGGGAACTTGCACAACAGCCCCACCACTCACCTCCACGTCTACTTCTGGCAACACGAGACCGAACCCATAAGACCAAAACGCTTGCTCTCCATGCAAATCAACCAGGAAGGGATTTGTCCTACACCTCCCATCGACCTGCTTGTAAATCTAGGCACTCCACATTTGTCATCCTTTTCACATGAGCATCATTGCCACGCCATCGCCGATGCTGGCTTAATCTGTCTTTTTGATTCCATGTGTGAGGACGACCCTCACCCAGCTTATGTCTTTAATCCCAACACCCGAGTTTATTGCTCTTCCAGACGCTCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

249

Amino Acids

28.18

Weight (kDa)

6.85

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	59 - 152	1.7e-08	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	579
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	2 cut(s)	182, 405
AcsI	RAATTY	1 cut(s)	220
AcvI	CACGTG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	91, 182, 218
AjiI	CACGTC	1 cut(s)	472
AjnI	CCWGG	2 cut(s)	418, 537
AluBI	AGCT	5 cut(s)	44, 329, 351, 382, 695
AluI	AGCT	5 cut(s)	44, 329, 351, 382, 695
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	182, 405
Ama87I	CYCGRG	1 cut(s)	717
ApeKI	GCWGC	2 cut(s)	82, 116
ApoI	RAATTY	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	434, 455, 680
AvaI	CYCGRG	1 cut(s)	717
AxyI	CCTNAGG	1 cut(s)	204
BauI	CACGAG	2 cut(s)	135, 488
BbrPI	CACGTG	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	94, 103
BccI	CCATC	2 cut(s)	572, 641
BcgI	CGANNNNNNTGC	2 cut(s)	708, 742
BciT130I	CCWGG	2 cut(s)	420, 539
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	2 cut(s)	102, 584
BfmI	CTRYAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	579
BisI	GCNGC	2 cut(s)	83, 117
BlsI	GCNGC	2 cut(s)	84, 118
Bme1390I	CCNGG	2 cut(s)	420, 539
BmeT110I	CYCGRG	1 cut(s)	717
BmgBI	CACGTC	1 cut(s)	472
BmrFI	CCNGG	2 cut(s)	420, 539
BmsI	GCATC	4 cut(s)	103, 385, 628, 631
BsaAI	YACGTR	2 cut(s)	78, 747
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	257
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	2 cut(s)	420, 539
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	602
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	94, 103
BseYI	CCCAGC	1 cut(s)	691
BsiHKCI	CYCGRG	1 cut(s)	717
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	717
Bsp143I	GATC	2 cut(s)	174, 410
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	579
BspPI	GGATC	2 cut(s)	182, 405
BspQI	GCTCTTC	1 cut(s)	736
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	174, 410
BssSI	CACGAG	2 cut(s)	135, 488
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	2 cut(s)	135, 488
Bst2UI	CCWGG	2 cut(s)	420, 539
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	736
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBAI	YACGTR	2 cut(s)	78, 747
BstC8I	GCNNGC	2 cut(s)	518, 646
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	602
BstKTI	GATC	2 cut(s)	177, 413
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	174, 410
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 293, 526
BstNI	CCWGG	2 cut(s)	420, 539
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	418, 537
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	94, 103
BstX2I	RGATCY	2 cut(s)	174, 410
BstYI	RGATCY	2 cut(s)	174, 410
Bsu36I	CCTNAGG	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	619
BtrI	CACGTC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	2 cut(s)	310, 371
BtsIMutI	CAGTG	2 cut(s)	310, 371
BveI	ACCTGC	1 cut(s)	579
Cac8I	GCNNGC	2 cut(s)	518, 646
CviAII	CATG	6 cut(s)	19, 121, 231, 526, 614, 670
CviJI	RGCY	9 cut(s)	44, 56, 99, 329, 351, 382, 453, 648, 695
CviKI_1	RGCY	9 cut(s)	44, 56, 99, 329, 351, 382, 453, 648, 695
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	176, 412
DpnII	GATC	2 cut(s)	174, 410
Eam1104I	CTCTTC	1 cut(s)	736
EarI	CTCTTC	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	485
Eco32I	GATATC	1 cut(s)	64
Eco72I	CACGTG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	717
EcoRII	CCWGG	2 cut(s)	418, 537
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	6 cut(s)	22, 124, 234, 529, 617, 673
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	6 cut(s)	18, 120, 230, 525, 613, 669
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	83, 117
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	2 cut(s)	83, 117
FspBI	CTAG	2 cut(s)	102, 584
GluI	GCNGC	2 cut(s)	83, 117
GsaI	CCCAGC	1 cut(s)	695
Hin1II	CATG	6 cut(s)	22, 124, 234, 529, 617, 673
HinfI	GANTC	1 cut(s)	665
HphI	GGTGA	3 cut(s)	434, 455, 680
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	2 cut(s)	203, 735
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	46, 152, 536
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	3 cut(s)	77, 471, 746
HpyCH4V	TGCA	7 cut(s)	9, 230, 287, 303, 376, 445, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 293, 526
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	3 cut(s)	77, 471, 746
Hsp92II	CATG	6 cut(s)	22, 124, 234, 529, 617, 673
Kzo9I	GATC	2 cut(s)	174, 410
LguI	GCTCTTC	1 cut(s)	736
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	2 cut(s)	94, 103
LweI	GCATC	4 cut(s)	103, 385, 628, 631
MaeI	CTAG	2 cut(s)	102, 584
MaeII	ACGT	3 cut(s)	77, 471, 746
MaeIII	GTNAC	2 cut(s)	164, 233
MalI	GATC	2 cut(s)	176, 412
MboI	GATC	2 cut(s)	174, 410
MboII	GAAGA	3 cut(s)	138, 390, 723
MflI	RGATCY	2 cut(s)	174, 410
MluCI	AATT	3 cut(s)	129, 220, 394
MnlI	CCTC	6 cut(s)	131, 199, 476, 570, 670, 696
Mph1103I	ATGCAT	1 cut(s)	11
MseI	TTAA	5 cut(s)	384, 393, 404, 650, 705
MslI	CAYNNNNRTG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	420, 539
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	420, 539
MwoI	GCNNNNNNNGC	3 cut(s)	116, 293, 526
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	174, 410
NlaIII	CATG	6 cut(s)	22, 124, 234, 529, 617, 673
NsiI	ATGCAT	1 cut(s)	11
NspI	RCATGY	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	84, 118
PmaCI	CACGTG	1 cut(s)	78
PmlI	CACGTG	1 cut(s)	78
Ppu21I	YACGTR	2 cut(s)	78, 747
PsiI	TTATAA	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	418, 537
PspCI	CACGTG	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	691
PspGI	CCWGG	2 cut(s)	418, 537
PsuI	RGATCY	2 cut(s)	174, 410
RseI	CAYNNNNRTG	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	736
SaqAI	TTAA	5 cut(s)	384, 393, 404, 650, 705
SatI	GCNGC	2 cut(s)	83, 117
Sau3AI	GATC	2 cut(s)	174, 410
ScrFI	CCNGG	2 cut(s)	420, 539
SfaNI	GCATC	4 cut(s)	103, 385, 628, 631
SfcI	CTRYAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	229
Sse9I	AATT	3 cut(s)	129, 220, 394
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	102, 584
StyD4I	CCNGG	2 cut(s)	418, 537
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	3 cut(s)	80, 474, 749
TaqI	TCGA	2 cut(s)	185, 567
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	3 cut(s)	129, 220, 394
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	5 cut(s)	384, 393, 404, 650, 705
Tru9I	TTAA	5 cut(s)	384, 393, 404, 650, 705
TscAI	CASTG	2 cut(s)	310, 378
TseI	GCWGC	2 cut(s)	82, 116
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	310, 378
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	2 cut(s)	102, 584
Zsp2I	ATGCAT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.