Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

23400556 .. 23403503

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGACCCGCCCAAGCCCACCGACAACCCCCAGACTCAGGCCCCCGCTGCCGATGCTCAGAACGGGGACAATAATTGGGCCACCTTCGTCATGCAATCGTCGGAGCCCCCGCCGCTGCCGCTGCCGCAGCCGGAGCCGGAGCCGACGGCCAAGAGATCGGTCCACTGGAGCCCCGAATTGGTCACGCAATCCACTTTCAGCAATACAATCCCCGTGCACGATTCGAACCAGGGATCGAGTGCGTACGCCGGTCAATCTCCGGGGTTGACCTCCTCTTTCTCATTCAAAGATTCGGTGGAGTCTGTACGGAATGTGTTAGGGAGATGGACAAAGTCGGTGGGGGAAGCTACGAGGAAGGCTGAGGATCTCGCCGGAAACACGTGGCAGCACTTGAAAACAAGCCCTAGTCTTGCGGATGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTTCTAGCAGAAGGTGGTTACGAGAAGATCTTTCGATCAACCTTTGAGACAGTTCCTGAGGAGCAGCTTCAGAATTCATTTGCATGTTACTTGTCTACGTCAGCAGGTCCGGTCATGGGAGTTTTATATGTATCTTCTGCAAAGGTTGCTTATTGTAGTGATAATCCCATATCCTACAAAGCCAATAACCAAACTGAATGGAGTTATTATAAGGTGGTTATCCCTGTACATCAGCTCAAAGCAGTCAATCCTTCATCAAGCAGATCCAATCCTGCTGAAAAGTACATACAGGTTATCTCAGTTGATAATCATGAATTTTGGTTCATGGGCTTCTTGAATTATGATGCTGCTGTGGAATGCCTACTAGGAGCTCTACAAGCCCGGAGCTTATCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

283

Amino Acids

30.71

Weight (kDa)

5.4

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	160 - 277	1.9e-17	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
Acc36I	ACCTGC	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	545
AciI	CCGC	7 cut(s)	8, 45, 110, 113, 119, 125, 413
AclWI	GGATC	3 cut(s)	241, 372, 708
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	523, 764
AcuI	CTGAAG	1 cut(s)	503
AcvI	CACGTG	1 cut(s)	381
AfaI	GTAC	4 cut(s)	245, 306, 678, 734
AfiI	CCNNNNNNNGG	3 cut(s)	37, 178, 566
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	3 cut(s)	286, 394, 787
AjnI	CCWGG	1 cut(s)	228
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
AluBI	AGCT	5 cut(s)	347, 517, 685, 821, 837
AluI	AGCT	5 cut(s)	347, 517, 685, 821, 837
Alw21I	GWGCWC	2 cut(s)	219, 823
Alw26I	GTCTC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	215
AlwI	GGATC	3 cut(s)	241, 372, 708
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	3 cut(s)	39, 78, 147
ApaLI	GTGCAC	1 cut(s)	215
ApeKI	GCWGC	8 cut(s)	47, 115, 121, 127, 385, 419, 514, 797
ApoI	RAATTY	2 cut(s)	523, 764
AspS9I	GGNCC	5 cut(s)	4, 40, 78, 160, 557
AsuC2I	CCSGG	2 cut(s)	261, 832
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	3 cut(s)	4, 160, 557
AxyI	CCTNAGG	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	219
BanII	GRGCYC	3 cut(s)	108, 173, 823
BbrPI	CACGTG	1 cut(s)	381
Bbv12I	GWGCWC	2 cut(s)	219, 823
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	8 cut(s)	34, 102, 108, 139, 397, 406, 526, 784
BccI	CCATC	1 cut(s)	318
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	2 cut(s)	261, 832
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	3 cut(s)	405, 455, 815
BfuAI	ACCTGC	1 cut(s)	545
BglII	AGATCT	1 cut(s)	477
Bme1390I	CCNGG	3 cut(s)	230, 261, 832
Bme18I	GGWCC	3 cut(s)	4, 160, 557
BmgT120I	GGNCC	5 cut(s)	4, 40, 78, 160, 557
BmiI	GGNNCC	6 cut(s)	6, 42, 105, 135, 141, 170
BmrFI	CCNGG	3 cut(s)	230, 261, 832
BmsI	GCATC	3 cut(s)	43, 406, 784
BpmI	CTGGAG	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	2 cut(s)	261, 832
BsaAI	YACGTR	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	229, 260, 423
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 178, 566
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	170
Bse21I	CCTNAGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	229, 260, 423
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	37, 178, 566
BseMII	CTCAG	5 cut(s)	50, 71, 351, 498, 762
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	262, 524
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	8 cut(s)	34, 102, 108, 139, 397, 406, 526, 784
BshFI	GGCC	3 cut(s)	41, 80, 149
BsiHKAI	GWGCWC	2 cut(s)	219, 823
BsiSI	CCGG	7 cut(s)	131, 137, 249, 260, 372, 560, 832
BsiWI	CGTACG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	37, 178, 566
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	3 cut(s)	41, 80, 149
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	4 cut(s)	108, 173, 219, 823
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	6 cut(s)	155, 233, 364, 477, 485, 713
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	7 cut(s)	8, 45, 110, 113, 119, 125, 413
BspANI	GGCC	3 cut(s)	41, 80, 149
BspCNI	CTCAG	5 cut(s)	49, 70, 352, 499, 761
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	6 cut(s)	6, 42, 105, 135, 141, 170
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	3 cut(s)	241, 372, 708
BspT104I	TTCGAA	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	229, 260, 423
BssMI	GATC	6 cut(s)	155, 233, 364, 477, 485, 713
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	502
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	676
BstBAI	YACGTR	1 cut(s)	381
BstBI	TTCGAA	1 cut(s)	224
BstDEI	CTNAG	5 cut(s)	36, 57, 360, 507, 748
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	6 cut(s)	158, 236, 367, 480, 488, 716
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	6 cut(s)	155, 233, 364, 477, 485, 713
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	3 cut(s)	228, 259, 830
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	8 cut(s)	34, 102, 108, 139, 397, 406, 526, 784
BstX2I	RGATCY	3 cut(s)	364, 477, 713
BstYI	RGATCY	3 cut(s)	364, 477, 713
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	3 cut(s)	41, 80, 149
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	545
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	760
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	5 cut(s)	4, 40, 78, 160, 557
Csp6I	GTAC	4 cut(s)	244, 305, 677, 733
CspCI	CAANNNNNGTGG	2 cut(s)	318, 353
CviAII	CATG	6 cut(s)	91, 424, 534, 565, 761, 775
CviQI	GTAC	4 cut(s)	244, 305, 677, 733
DdeI	CTNAG	5 cut(s)	36, 57, 360, 507, 748
DpnI	GATC	6 cut(s)	157, 235, 366, 479, 487, 715
DpnII	GATC	6 cut(s)	155, 233, 364, 477, 485, 713
EaeI	YGGCCR	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	821
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	3 cut(s)	108, 173, 823
Eco47I	GGWCC	3 cut(s)	4, 160, 557
Eco53kI	GAGCTC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	503
Eco72I	CACGTG	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	821
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	3 cut(s)	108, 173, 823
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	6 cut(s)	94, 427, 537, 568, 764, 778
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	6 cut(s)	90, 423, 533, 564, 760, 774
FauI	CCCGC	3 cut(s)	15, 52, 117
FblI	GTMKAC	1 cut(s)	545
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	3 cut(s)	108, 173, 823
FspBI	CTAG	3 cut(s)	405, 455, 815
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	41, 80, 149
HapII	CCGG	7 cut(s)	131, 137, 249, 260, 372, 560, 832
Hin1II	CATG	6 cut(s)	94, 427, 537, 568, 764, 778
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	4 cut(s)	34, 221, 290, 299
HpaII	CCGG	7 cut(s)	131, 137, 249, 260, 372, 560, 832
Hpy166II	GTNNAC	4 cut(s)	163, 217, 267, 546
Hpy188I	TCNGA	3 cut(s)	60, 103, 522
Hpy188III	TCNNGA	3 cut(s)	506, 761, 784
Hpy8I	GTNNAC	4 cut(s)	163, 217, 267, 546
Hpy99I	CGWCG	2 cut(s)	103, 148
HpyAV	CCTTC	4 cut(s)	94, 349, 455, 711
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	2 cut(s)	380, 548
HpyCH4V	TGCA	5 cut(s)	94, 217, 437, 533, 590
HpyF3I	CTNAG	5 cut(s)	36, 57, 360, 507, 748
HpySE526I	ACGT	2 cut(s)	380, 548
Hsp92II	CATG	6 cut(s)	94, 427, 537, 568, 764, 778
Kzo9I	GATC	6 cut(s)	155, 233, 364, 477, 485, 713
LmnI	GCTCC	7 cut(s)	103, 133, 139, 168, 511, 818, 834
Lsp1109I	GCAGC	8 cut(s)	34, 102, 108, 139, 397, 406, 526, 784
LweI	GCATC	3 cut(s)	43, 406, 784
MaeI	CTAG	3 cut(s)	405, 455, 815
MaeII	ACGT	2 cut(s)	380, 548
MaeIII	GTNAC	3 cut(s)	181, 467, 536
MalI	GATC	6 cut(s)	157, 235, 366, 479, 487, 715
MboI	GATC	6 cut(s)	155, 233, 364, 477, 485, 713
MboII	GAAGA	3 cut(s)	441, 487, 576
MflI	RGATCY	3 cut(s)	364, 477, 713
MhlI	GDGCHC	4 cut(s)	108, 173, 219, 823
MluCI	AATT	6 cut(s)	73, 176, 432, 523, 764, 787
MlyI	GAGTC	2 cut(s)	28, 308
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	280, 283, 345, 355, 502
MslI	CAYNNNNRTG	1 cut(s)	532
MspA1I	CMGCKG	3 cut(s)	47, 115, 121
MspI	CCGG	7 cut(s)	131, 137, 249, 260, 372, 560, 832
MspR9I	CCNGG	3 cut(s)	230, 261, 832
Mva1269I	GAATGC	1 cut(s)	812
MvaI	CCWGG	1 cut(s)	230
NciI	CCSGG	2 cut(s)	261, 832
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	6 cut(s)	155, 233, 364, 477, 485, 713
NlaIII	CATG	6 cut(s)	94, 427, 537, 568, 764, 778
NlaIV	GGNNCC	6 cut(s)	6, 42, 105, 135, 141, 170
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	537
NspV	TTCGAA	1 cut(s)	224
PagI	TCATGA	1 cut(s)	760
PctI	GAATGC	1 cut(s)	812
PfeI	GAWTC	2 cut(s)	221, 290
Pfl23II	CGTACG	1 cut(s)	243
PflFI	GACNNNGTC	1 cut(s)	331
PleI	GAGTC	2 cut(s)	28, 307
PmaCI	CACGTG	1 cut(s)	381
PmlI	CACGTG	1 cut(s)	381
PpsI	GAGTC	2 cut(s)	28, 307
Ppu21I	YACGTR	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	823
Psp6I	CCWGG	1 cut(s)	228
PspCI	CACGTG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	228
PspLI	CGTACG	1 cut(s)	243
PspN4I	GGNNCC	6 cut(s)	6, 42, 105, 135, 141, 170
PspPI	GGNCC	5 cut(s)	4, 40, 78, 160, 557
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	3 cut(s)	364, 477, 713
PsyI	GACNNNGTC	1 cut(s)	331
RsaI	GTAC	4 cut(s)	245, 306, 678, 734
RsaNI	GTAC	4 cut(s)	244, 305, 677, 733
RseI	CAYNNNNRTG	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	823
Sau3AI	GATC	6 cut(s)	155, 233, 364, 477, 485, 713
Sau96I	GGNCC	5 cut(s)	4, 40, 78, 160, 557
SchI	GAGTC	2 cut(s)	28, 308
ScrFI	CCNGG	3 cut(s)	230, 261, 832
SduI	GDGCHC	4 cut(s)	108, 173, 219, 823
SfaNI	GCATC	3 cut(s)	43, 406, 784
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	3 cut(s)	4, 160, 557
SmiMI	CAYNNNNRTG	1 cut(s)	532
Sse9I	AATT	6 cut(s)	73, 176, 432, 523, 764, 787
SsiI	CCGC	7 cut(s)	8, 45, 110, 113, 119, 125, 413
SspMI	CTAG	3 cut(s)	405, 455, 815
SstI	GAGCTC	1 cut(s)	823
StyD4I	CCNGG	3 cut(s)	228, 259, 830
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	2 cut(s)	383, 551
TaqI	TCGA	3 cut(s)	224, 236, 484
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	6 cut(s)	73, 176, 432, 523, 764, 787
TatI	WGTACW	2 cut(s)	676, 732
TauI	GCSGC	3 cut(s)	115, 121, 127
TfiI	GAWTC	2 cut(s)	221, 290
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	8 cut(s)	47, 115, 121, 127, 385, 419, 514, 797
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	516, 693, 763, 777
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	170
Tth111I	GACNNNGTC	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	215
VpaK11BI	GGWCC	3 cut(s)	4, 160, 557
XapI	RAATTY	2 cut(s)	523, 764
XceI	RCATGY	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	545
XspI	CTAG	3 cut(s)	405, 455, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.