Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

23513297 .. 23514804

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGATCCGCCCAAGCCCACCACCGAGGCCGACGCCAAAACGCACGCTCCGGCCGCCCAGGATCCGAACCCGAAAGCCGCAGCCCAAGCTCCGAACGGGGATCGGAACTGGGCGAGCTTCGTGACGGCCTCGCAGGCTCAGGCTCAACCGACTTCGACGGAGGCAGTCTCTACCCCCACGGGTTCGGGGTCGAAGAAATCGGTTCGTTGGAGCCCGGAATTGGTGTCGGAGTCCCACAATACCGCCGCTGCGTCGGATCATTCTTCCCATCAGGGATCCAATCCCTACGTGGCTCCCTCCCCTATGCTCTCACAATCTTTCTCATTCAAAGATTCCGTGGACACTGTACGGAACGTGTTTGGGAGATGGAGGAAGTCGGTGGGGGAGGCTACTAAGAAGGCGGAGGATCTCGCTGGAAACACGTGGCAGCACTTAAAAACAAGCCCCAGTTTCACTGACGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTCCTTGCAGAAGGTGGTTACGAGAAGATCGTTCGATCAACTTTTGAGACAACTCCCGATGAGCAACTTCAAAAGTCATTTGCATGCTACTTATCCACATCAGCTGGTCCAGTCATGGGCGTTTTATATGTTTCTACTGCAAAACTTGCCTATTGCAGTGATAATCCCATTTCATACAAAGCTGAGAGCCAAACTGAATGGAGCTATTACAAGGTAAGTTTGCACATGCCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

243

Amino Acids

26.03

Weight (kDa)

7.01

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	8, 54, 78, 243, 246, 401
AclWI	GGATC	8 cut(s)	12, 56, 69, 108, 264, 270, 283, 414
AcoI	YGGCCR	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	220, 608
AflIII	ACRYGT	2 cut(s)	354, 420
AgsI	TTSAA	2 cut(s)	328, 563
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	5 cut(s)	89, 117, 596, 674, 696
AluI	AGCT	5 cut(s)	89, 117, 596, 674, 696
Alw26I	GTCTC	2 cut(s)	172, 533
AlwI	GGATC	8 cut(s)	12, 56, 69, 108, 264, 270, 283, 414
AoxI	GGCC	3 cut(s)	27, 51, 126
ApeKI	GCWGC	4 cut(s)	80, 248, 427, 461
AspS9I	GGNCC	2 cut(s)	493, 599
AsuC2I	CCSGG	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	493, 599
BamHI	GGATCC	3 cut(s)	4, 61, 275
BanII	GRGCYC	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	423
BbvI	GCAGC	4 cut(s)	92, 235, 439, 448
BccI	CCATC	2 cut(s)	276, 360
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	172, 533
BfaI	CTAG	1 cut(s)	727
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	7 cut(s)	54, 78, 81, 246, 249, 428, 462
BlsI	GCNGC	7 cut(s)	55, 79, 82, 247, 250, 429, 463
Bme1390I	CCNGG	2 cut(s)	59, 215
Bme18I	GGWCC	2 cut(s)	493, 599
BmgT120I	GGNCC	2 cut(s)	493, 599
BmiI	GGNNCC	5 cut(s)	6, 63, 212, 277, 294
BmrFI	CCNGG	2 cut(s)	59, 215
BmrI	ACTGGG	2 cut(s)	118, 441
BmuI	ACTGGG	2 cut(s)	118, 441
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu10I	CCTNAGC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	2 cut(s)	289, 423
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	5 cut(s)	24, 57, 177, 336, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 608
Bse1I	ACTGG	3 cut(s)	113, 447, 602
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	5 cut(s)	24, 57, 177, 336, 465
BseLI	CCNNNNNNNGG	2 cut(s)	220, 608
BseMII	CTCAG	2 cut(s)	152, 666
BseNI	ACTGG	3 cut(s)	113, 447, 602
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	92, 235, 439, 448
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	29, 53, 128
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	50, 215
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	220, 608
BsmAI	GTCTC	2 cut(s)	172, 533
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	3 cut(s)	29, 53, 128
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	8 cut(s)	4, 61, 100, 256, 275, 406, 519, 527
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	6 cut(s)	8, 54, 78, 243, 246, 401
BspANI	GGCC	3 cut(s)	29, 53, 128
BspCNI	CTCAG	2 cut(s)	151, 667
BspLI	GGNNCC	5 cut(s)	6, 63, 212, 277, 294
BspPI	GGATC	8 cut(s)	12, 56, 69, 108, 264, 270, 283, 414
BsrI	ACTGG	3 cut(s)	113, 447, 602
BssECI	CCNNGG	5 cut(s)	24, 57, 177, 336, 465
BssMI	GATC	8 cut(s)	4, 61, 100, 256, 275, 406, 519, 527
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstBAI	YACGTR	2 cut(s)	289, 423
BstC8I	GCNNGC	4 cut(s)	45, 115, 135, 577
BstDEI	CTNAG	3 cut(s)	138, 393, 675
BstDSI	CCRYGG	3 cut(s)	177, 336, 465
BstKTI	GATC	8 cut(s)	7, 64, 103, 259, 278, 409, 522, 530
BstMAI	GTCTC	2 cut(s)	172, 533
BstMBI	GATC	8 cut(s)	4, 61, 100, 256, 275, 406, 519, 527
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 86, 134, 638
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	2 cut(s)	579, 721
BstSCI	CCNGG	2 cut(s)	57, 213
BstV1I	GCAGC	4 cut(s)	92, 235, 439, 448
BstX2I	RGATCY	4 cut(s)	4, 61, 275, 406
BstYI	RGATCY	4 cut(s)	4, 61, 275, 406
BstZI	CGGCCG	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	29, 53, 128
BtgI	CCRYGG	3 cut(s)	177, 336, 465
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	3 cut(s)	342, 453, 655
Cac8I	GCNNGC	4 cut(s)	45, 115, 135, 577
Cfr13I	GGNCC	2 cut(s)	493, 599
CseI	GACGC	3 cut(s)	41, 240, 467
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	4 cut(s)	466, 576, 607, 718
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	138, 393, 675
DpnI	GATC	8 cut(s)	6, 63, 102, 258, 277, 408, 521, 529
DpnII	GATC	8 cut(s)	4, 61, 100, 256, 275, 406, 519, 527
EaeI	YGGCCR	1 cut(s)	51
EagI	CGGCCG	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	416
EclXI	CGGCCG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	493, 599
Eco52I	CGGCCG	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	4 cut(s)	469, 579, 610, 721
FaiI	YATR	8 cut(s)	305, 467, 577, 608, 619, 621, 667, 719
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	465, 575, 606, 717
Fnu4HI	GCNGC	7 cut(s)	54, 78, 81, 246, 249, 428, 462
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	7 cut(s)	54, 78, 81, 246, 249, 428, 462
FspBI	CTAG	1 cut(s)	727
GluI	GCNGC	7 cut(s)	54, 78, 81, 246, 249, 428, 462
HaeIII	GGCC	3 cut(s)	29, 53, 128
HapII	CCGG	2 cut(s)	50, 215
HgaI	GACGC	3 cut(s)	41, 240, 467
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	469, 579, 610, 721
HinfI	GANTC	2 cut(s)	230, 332
HpaII	CCGG	2 cut(s)	50, 215
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	5 cut(s)	66, 93, 105, 229, 256
Hpy188III	TCNNGA	2 cut(s)	121, 548
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	3 cut(s)	35, 160, 256
HpyAV	CCTTC	2 cut(s)	391, 497
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	3 cut(s)	288, 354, 422
HpyCH4V	TGCA	6 cut(s)	479, 500, 575, 632, 648, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 86, 134, 638
HpyF3I	CTNAG	3 cut(s)	138, 393, 675
HpySE526I	ACGT	3 cut(s)	288, 354, 422
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	469, 579, 610, 721
Kzo9I	GATC	8 cut(s)	4, 61, 100, 256, 275, 406, 519, 527
LmnI	GCTCC	5 cut(s)	52, 94, 210, 298, 693
Lsp1109I	GCAGC	4 cut(s)	92, 235, 439, 448
MaeI	CTAG	1 cut(s)	727
MaeII	ACGT	3 cut(s)	288, 354, 422
MaeIII	GTNAC	2 cut(s)	121, 509
MalI	GATC	8 cut(s)	6, 63, 102, 258, 277, 408, 521, 529
MboI	GATC	8 cut(s)	4, 61, 100, 256, 275, 406, 519, 527
MboII	GAAGA	4 cut(s)	205, 255, 483, 529
MflI	RGATCY	4 cut(s)	4, 61, 275, 406
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	2 cut(s)	218, 474
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	3 cut(s)	188, 207, 234
MnlI	CCTC	7 cut(s)	19, 139, 154, 307, 363, 379, 397
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	1 cut(s)	574
MspA1I	CMGCKG	2 cut(s)	248, 596
MspI	CCGG	2 cut(s)	50, 215
MspR9I	CCNGG	2 cut(s)	59, 215
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	4 cut(s)	53, 86, 134, 638
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	8 cut(s)	4, 61, 100, 256, 275, 406, 519, 527
NlaIII	CATG	4 cut(s)	469, 579, 610, 721
NlaIV	GGNNCC	5 cut(s)	6, 63, 212, 277, 294
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	2 cut(s)	579, 721
PaeI	GCATGC	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	7 cut(s)	55, 79, 82, 247, 250, 429, 463
PleI	GAGTC	1 cut(s)	238
PmaCI	CACGTG	1 cut(s)	423
PmlI	CACGTG	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	2 cut(s)	289, 423
PpuMI	RGGWCCY	1 cut(s)	493
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	57
PspCI	CACGTG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	5 cut(s)	6, 63, 212, 277, 294
PspPI	GGNCC	2 cut(s)	493, 599
PspPPI	RGGWCCY	1 cut(s)	493
PsuI	RGATCY	4 cut(s)	4, 61, 275, 406
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	574
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	7 cut(s)	54, 78, 81, 246, 249, 428, 462
Sau3AI	GATC	8 cut(s)	4, 61, 100, 256, 275, 406, 519, 527
Sau96I	GGNCC	2 cut(s)	493, 599
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	59, 215
SduI	GDGCHC	1 cut(s)	215
SinI	GGWCC	2 cut(s)	493, 599
SmiMI	CAYNNNNRTG	1 cut(s)	574
SphI	GCATGC	1 cut(s)	579
Sse9I	AATT	2 cut(s)	218, 474
SsiI	CCGC	6 cut(s)	8, 54, 78, 243, 246, 401
SspMI	CTAG	1 cut(s)	727
StyD4I	CCNGG	2 cut(s)	57, 213
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	3 cut(s)	291, 357, 425
TaqI	TCGA	3 cut(s)	155, 191, 526
TasI	AATT	2 cut(s)	218, 474
TauI	GCSGC	3 cut(s)	56, 80, 248
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	3 cut(s)	349, 460, 655
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	4 cut(s)	80, 248, 427, 461
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	654
TspGWI	ACGGA	3 cut(s)	173, 325, 364
TspRI	CASTG	3 cut(s)	349, 460, 655
VpaK11BI	GGWCC	2 cut(s)	493, 599
XceI	RCATGY	2 cut(s)	579, 721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.