Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

12077501 .. 12077974

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGTTGCGACTCTCTTTGTTGGCAATCCTACTGCTGTTATCGGCGGCTAGTACAACTACGTCGACAACAGCAGCTCCTACTCAAGCCAAGCCTGGCTGCTCAGAGAATCGTGCCTTGGCGTCCTCGACGGCTTTGAGGCTCCGAGCAAGGAGGACCAGTTTGACACTCGCGCCGTCTCGGCTCCGATCTCCTCTAATCGAACATTGTACCTGTGATGATGGCCGTGATGGAGAGGAGATCGGGGCAGCATCGGTGATGGAGCGGAGATTAGAGGAACCGATTAGAGGAATATGTACCTGTGATGATGGCCGTGATGGAGCGGAGATTGGGGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

11.92

Weight (kDa)

5.82

Isoelectric Point (pI)

64.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	265, 323
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	1 cut(s)	173
AciI	CCGC	3 cut(s)	47, 265, 323
AcoI	YGGCCR	2 cut(s)	223, 310
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	3 cut(s)	55, 211, 298
AfiI	CCNNNNNNNGG	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	2 cut(s)	77, 338
AluI	AGCT	2 cut(s)	77, 338
Alw26I	GTCTC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	223, 310
ApeKI	GCWGC	4 cut(s)	74, 99, 248, 335
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	86, 86, 260
BccI	CCATC	5 cut(s)	215, 224, 253, 302, 311
BceAI	ACGGC	4 cut(s)	147, 160, 210, 297
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	181
BisI	GCNGC	5 cut(s)	48, 75, 100, 249, 336
BlsI	GCNGC	5 cut(s)	49, 76, 101, 250, 337
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	3 cut(s)	143, 185, 279
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	117
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	2 cut(s)	183, 251
BseXI	GCAGC	3 cut(s)	86, 86, 260
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	225, 312
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	183
BsmBI	CGTCTC	1 cut(s)	183
BsnI	GGCC	2 cut(s)	225, 312
Bsp143I	GATC	2 cut(s)	188, 240
BspACI	CCGC	3 cut(s)	47, 265, 323
BspANI	GGCC	2 cut(s)	225, 312
BspCNI	CTCAG	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	3 cut(s)	143, 185, 279
BsrBI	CCGCTC	2 cut(s)	265, 323
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	188, 240
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	191, 243
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	188, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	86, 86, 260
BsuRI	GGCC	2 cut(s)	225, 312
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	54, 210, 297
CviQI	GTAC	3 cut(s)	54, 210, 297
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	2 cut(s)	190, 242
DpnII	GATC	2 cut(s)	188, 240
EaeI	YGGCCR	2 cut(s)	223, 310
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	183
FaiI	YATR	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	5 cut(s)	48, 75, 100, 249, 336
Fsp4HI	GCNGC	5 cut(s)	48, 75, 100, 249, 336
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	5 cut(s)	48, 75, 100, 249, 336
HaeIII	GGCC	2 cut(s)	225, 312
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	12, 109
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	106, 146, 188
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	2 cut(s)	67, 133
HpyCH4IV	ACGT	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	122
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	188, 240
LmnI	GCTCC	5 cut(s)	82, 147, 189, 262, 320
LpnPI	CCDG	5 cut(s)	81, 108, 172, 226, 313
Lsp1109I	GCAGC	3 cut(s)	86, 86, 260
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	62
MalI	GATC	2 cut(s)	190, 242
MbiI	CCGCTC	2 cut(s)	265, 323
MboI	GATC	2 cut(s)	188, 240
MlyI	GAGTC	1 cut(s)	6
MnlI	CCTC	7 cut(s)	132, 136, 147, 204, 229, 268, 281
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	2 cut(s)	188, 240
NlaIV	GGNNCC	3 cut(s)	143, 185, 279
NmeAIII	GCCGAG	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	49, 76, 101, 250, 337
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	143, 185, 279
PspPI	GGNCC	1 cut(s)	156
RsaI	GTAC	3 cut(s)	55, 211, 298
RsaNI	GTAC	3 cut(s)	54, 210, 297
SalI	GTCGAC	1 cut(s)	64
SatI	GCNGC	5 cut(s)	48, 75, 100, 249, 336
Sau3AI	GATC	2 cut(s)	188, 240
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	5 cut(s)	65, 79, 215, 302, 340
SfaNI	GCATC	1 cut(s)	260
SinI	GGWCC	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SsiI	CCGC	3 cut(s)	47, 265, 323
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	65, 128, 201
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	109
TseI	GCWGC	4 cut(s)	74, 99, 248, 335
VpaK11BI	GGWCC	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.