Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

29133148 .. 29134202

Gene Structure 1055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCTGAATGTCGTCTGGGATCCAGTCCTTACGTTGCTCACTATGCCCCAGTGCTAACTCCATCTTTCTCCTTCAAAGGTTCAGTGGAGACCGTAGGCAATAGATTCAGGACATGGGGAAAGTCCGTCGCAGAAGCTACAAAGAAGGCTGTGGATATCGCCGGAAACACTTGGCACCACTTGAAAACAAGCCCTAGTCTTTCTGATGCTGCCATGGGAAGAATCACACGAGCAACAAAAGTACTAGCACAAGGTGGTCCCGAAAGTATATTCCGATCGACCTTTGAGATAGTTCCTGAGGAACAACTTCAAAAGTCATATGCCTGTTACTTATCTACGTCGTCTGGTCCAGTAATGGGAGTACTATATGTATCTACTGCCAAGATTGCTTATTGCAGTGACAATCTCGTTTTACACAAATTTGAAAACCAAACTGAATGTAGCTGTTTGAAGGTGGTTATCCCATTGCATCAGCTTAAAGCAGTCAATCCTTCGGTAAGCAGATCCAATCCTGGTGAGAAGTACATACAGATCATCTCAATTGATGACCATGAATTTTGGATTATGGGGTTCCTGAATTATAATGGTGCTGTTCAATGCCTACAAGGAGCTCTACATGCCGGGAGCATATCTCTGGGATGGTGGCAGACCTCTTCGTTGAGCTCGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

224

Amino Acids

24.33

Weight (kDa)

8.5

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	90 - 202	1.6e-15	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	174
AclWI	GGATC	3 cut(s)	15, 28, 498
AcsI	RAATTY	2 cut(s)	419, 554
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	3 cut(s)	243, 363, 524
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	6 cut(s)	76, 184, 311, 425, 451, 596
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	5 cut(s)	137, 444, 475, 611, 663
AluI	AGCT	5 cut(s)	137, 444, 475, 611, 663
Alw21I	GWGCWC	2 cut(s)	613, 665
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	3 cut(s)	15, 28, 498
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	419, 554
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	257, 347
AsuC2I	CCSGG	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	2 cut(s)	257, 347
AxyI	CCTNAGG	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	613, 665
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	613, 665
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	70, 633
BciT130I	CCWGG	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	195, 245
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmcAI	AGTACT	2 cut(s)	243, 363
Bme1390I	CCNGG	2 cut(s)	513, 622
Bme18I	GGWCC	2 cut(s)	257, 347
BmgT120I	GGNCC	2 cut(s)	257, 347
BmiI	GGNNCC	4 cut(s)	22, 176, 259, 572
BmrFI	CCNGG	2 cut(s)	513, 622
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	196, 478
BmuI	ACTGGG	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
BpuMI	CCSGG	1 cut(s)	622
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	24, 50, 350
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	644
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	3 cut(s)	24, 50, 350
BseXI	GCAGC	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	613, 665
BsiSI	CCGG	2 cut(s)	162, 621
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	613, 665
Bsp143I	GATC	4 cut(s)	20, 275, 503, 531
Bsp19I	CCATGG	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	4 cut(s)	22, 176, 259, 572
BspPI	GGATC	3 cut(s)	15, 28, 498
BspT107I	GGYRCC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	24, 50, 350
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	4 cut(s)	20, 275, 503, 531
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	658
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	644
BstKTI	GATC	4 cut(s)	23, 278, 506, 534
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	4 cut(s)	20, 275, 503, 531
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 386, 617
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	511, 620
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	2 cut(s)	20, 503
BstYI	RGATCY	2 cut(s)	20, 503
Bsu36I	CCTNAGG	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	644
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	57, 90, 403
Cfr13I	GGNCC	2 cut(s)	257, 347
Csp6I	GTAC	3 cut(s)	242, 362, 523
CviAII	CATG	4 cut(s)	114, 214, 551, 617
CviJI	RGCY	7 cut(s)	137, 149, 192, 444, 475, 611, 663
CviKI_1	RGCY	7 cut(s)	137, 149, 192, 444, 475, 611, 663
CviQI	GTAC	3 cut(s)	242, 362, 523
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	4 cut(s)	22, 277, 505, 533
DpnII	GATC	4 cut(s)	20, 275, 503, 531
DraIII	CACNNNGTG	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
Ecl136II	GAGCTC	2 cut(s)	611, 663
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	2 cut(s)	613, 665
Eco31I	GGTCTC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	257, 347
Eco53kI	GAGCTC	2 cut(s)	611, 663
Eco81I	CCTNAGG	1 cut(s)	297
EcoICRI	GAGCTC	2 cut(s)	611, 663
EcoRII	CCWGG	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	2 cut(s)	613, 665
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	117, 217, 554, 620
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	113, 213, 550, 616
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	651
FriOI	GRGCYC	2 cut(s)	613, 665
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	195, 245
GluI	GCNGC	1 cut(s)	210
HapII	CCGG	2 cut(s)	162, 621
Hin1II	CATG	4 cut(s)	117, 217, 554, 620
HinfI	GANTC	2 cut(s)	105, 222
HpaII	CCGG	2 cut(s)	162, 621
HphI	GGTGA	1 cut(s)	527
Hpy188I	TCNGA	3 cut(s)	7, 205, 275
Hpy188III	TCNNGA	4 cut(s)	109, 260, 296, 574
Hpy99I	CGWCG	3 cut(s)	131, 343, 670
HpyAV	CCTTC	4 cut(s)	82, 139, 445, 501
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	2 cut(s)	33, 338
HpyCH4V	TGCA	2 cut(s)	396, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 386, 617
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	33, 338
Hsp92II	CATG	4 cut(s)	117, 217, 554, 620
Kzo9I	GATC	4 cut(s)	20, 275, 503, 531
LmnI	GCTCC	2 cut(s)	608, 624
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	196, 478
MaeI	CTAG	2 cut(s)	195, 245
MaeII	ACGT	2 cut(s)	33, 338
MaeIII	GTNAC	2 cut(s)	326, 398
MalI	GATC	4 cut(s)	22, 277, 505, 533
MboI	GATC	4 cut(s)	20, 275, 503, 531
MboII	GAAGA	2 cut(s)	231, 645
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	20, 503
MhlI	GDGCHC	2 cut(s)	613, 665
MluCI	AATT	4 cut(s)	419, 540, 554, 577
MnlI	CCTC	2 cut(s)	292, 661
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	1 cut(s)	477
MspI	CCGG	2 cut(s)	162, 621
MspR9I	CCNGG	2 cut(s)	513, 622
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	44, 386, 617
NciI	CCSGG	1 cut(s)	622
NcoI	CCATGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	4 cut(s)	20, 275, 503, 531
NlaIII	CATG	4 cut(s)	117, 217, 554, 620
NlaIV	GGNNCC	4 cut(s)	22, 176, 259, 572
NmuCI	GTSAC	1 cut(s)	398
NspI	RCATGY	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	105, 222
PkrI	GCNGC	1 cut(s)	211
Ple19I	CGATCG	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	582
Psp124BI	GAGCTC	2 cut(s)	613, 665
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	4 cut(s)	22, 176, 259, 572
PspPI	GGNCC	2 cut(s)	257, 347
PsuI	RGATCY	2 cut(s)	20, 503
PvuI	CGATCG	1 cut(s)	278
RsaI	GTAC	3 cut(s)	243, 363, 524
RsaNI	GTAC	3 cut(s)	242, 362, 523
SacI	GAGCTC	2 cut(s)	613, 665
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	4 cut(s)	20, 275, 503, 531
Sau96I	GGNCC	2 cut(s)	257, 347
ScaI	AGTACT	2 cut(s)	243, 363
ScrFI	CCNGG	2 cut(s)	513, 622
SduI	GDGCHC	2 cut(s)	613, 665
SfaNI	GCATC	2 cut(s)	196, 478
SinI	GGWCC	2 cut(s)	257, 347
Sse9I	AATT	4 cut(s)	419, 540, 554, 577
SspMI	CTAG	2 cut(s)	195, 245
SstI	GAGCTC	2 cut(s)	613, 665
StyD4I	CCNGG	2 cut(s)	511, 620
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	2 cut(s)	36, 341
TaqI	TCGA	1 cut(s)	278
TasI	AATT	4 cut(s)	419, 540, 554, 577
TatI	WGTACW	3 cut(s)	241, 361, 522
TfiI	GAWTC	2 cut(s)	105, 222
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	3 cut(s)	57, 90, 403
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	57, 90, 403
VpaK11BI	GGWCC	2 cut(s)	257, 347
XapI	RAATTY	2 cut(s)	419, 554
XceI	RCATGY	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	2 cut(s)	195, 245
ZrmI	AGTACT	2 cut(s)	243, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.