Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

13333599 .. 13350673

Gene Structure 17075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGAAGAATTGCACGAGGAACAAAACTTTTAGCGGAAGGTGGTTACGGTAGGATCTTTCGATCGACCTTTGAGATAGATCCTGAGGAGCAACTTCAAAATTCATTTGCATGTTACTTATGTACGTCGTCCGGTCCAGTAATGGGATCGTTATATTATACAGCTGATGTGATAGTTGAAGTGAATGGATGGGTGGCTGTATATATTCCTCCGGAGTTGTTGAATGCAAGGGTCATGGACTTGTGGATTTTGAAGGATTACCAAAATCAGGTGTGGGTTAAGGAGAGCATCATCTTTCCCGAACCATGGGATGAATTGGGAATGCCTCTTCCTGTTTGCTCAATCCACACAGATGACAAAGCTTCAAGCTCTTATTTGGTTGAAGGGCAATATCGACAGAAAGAGTCCTCTGCAGATTCAACTACTCCACAGGATTATGGAATCAGTGTGTTTTATTCTTCCCTTCTATGTTGGTATAGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

161

Amino Acids

18.27

Weight (kDa)

4.56

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	62, 74, 154
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	143, 268, 306
AgsI	TTSAA	7 cut(s)	98, 179, 223, 253, 366, 383, 420
AluBI	AGCT	3 cut(s)	164, 362, 369
AluI	AGCT	3 cut(s)	164, 362, 369
AlwI	GGATC	3 cut(s)	62, 74, 154
Aor13HI	TCCGGA	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	134
AxyI	CCTNAGG	1 cut(s)	84
BauI	CACGAG	1 cut(s)	15
BccI	CCATC	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	2 cut(s)	131, 211
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 268, 306
Bse1I	ACTGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	194, 316
BseLI	CCNNNNNNNGG	3 cut(s)	143, 268, 306
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	132, 212
BslI	CCNNNNNNNGG	3 cut(s)	143, 268, 306
BsmI	GAATGC	2 cut(s)	229, 327
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	54, 62, 79, 146
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	3 cut(s)	62, 74, 154
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	4 cut(s)	54, 62, 79, 146
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	194, 316
BstKTI	GATC	4 cut(s)	57, 65, 82, 149
BstMBI	GATC	4 cut(s)	54, 62, 79, 146
BstMCI	CGRYCG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	411
BstX2I	RGATCY	2 cut(s)	54, 79
BstYI	RGATCY	2 cut(s)	54, 79
Bsu36I	CCTNAGG	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	194, 316
BtsIMutI	CAGTG	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	3 cut(s)	111, 235, 306
CviJI	RGCY	4 cut(s)	164, 197, 362, 369
CviKI_1	RGCY	4 cut(s)	164, 197, 362, 369
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	4 cut(s)	56, 64, 81, 148
DpnII	GATC	4 cut(s)	54, 62, 79, 146
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	134
Eco81I	CCTNAGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	3 cut(s)	114, 238, 309
FatI	CATG	3 cut(s)	110, 234, 305
FokI	GGATG	2 cut(s)	201, 323
HapII	CCGG	2 cut(s)	132, 212
Hin1II	CATG	3 cut(s)	114, 238, 309
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	3 cut(s)	404, 416, 441
HpaII	CCGG	2 cut(s)	132, 212
Hpy188III	TCNNGA	3 cut(s)	83, 212, 299
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	32, 247, 377, 473
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	4 cut(s)	14, 110, 227, 413
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	114, 238, 309
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	54, 62, 79, 146
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	96, 145, 150, 225, 254, 345, 416
LweI	GCATC	1 cut(s)	297
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	44, 113
MalI	GATC	4 cut(s)	56, 64, 81, 148
MboI	GATC	4 cut(s)	54, 62, 79, 146
MboII	GAAGA	3 cut(s)	18, 320, 450
MflI	RGATCY	2 cut(s)	54, 79
MluCI	AATT	3 cut(s)	9, 100, 314
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	5 cut(s)	11, 79, 219, 336, 418
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	2 cut(s)	109, 351
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	2 cut(s)	132, 212
Mva1269I	GAATGC	2 cut(s)	229, 327
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	4 cut(s)	54, 62, 79, 146
NlaIII	CATG	3 cut(s)	114, 238, 309
NspI	RCATGY	1 cut(s)	114
PctI	GAATGC	2 cut(s)	229, 327
PfeI	GAWTC	2 cut(s)	416, 441
Ple19I	CGATCG	1 cut(s)	65
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	54, 79
PvuI	CGATCG	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	2 cut(s)	109, 351
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	54, 62, 79, 146
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	413
SetI	ASST	7 cut(s)	43, 71, 128, 166, 273, 364, 371
SfaNI	GCATC	1 cut(s)	297
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	109, 351
Sse9I	AATT	3 cut(s)	9, 100, 314
SsiI	CCGC	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	3 cut(s)	61, 65, 394
TasI	AATT	3 cut(s)	9, 100, 314
TfiI	GAWTC	2 cut(s)	416, 441
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	93, 327
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	100
XceI	RCATGY	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.