Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

23902002 .. 23905309

Gene Structure 3308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG238000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGACCCGCCCAAGCCCACCGACAACCCCCAGACTCAGGCCCCCGCCGCCGATGCTCAGAACGGCGACAAGAATTGGGCCACCTTCGTCATGCAATCGTCGGAGCCCCCGCCGCAGCCGCAGCCGGAGCCGACGGCCAAGAGATCGGTCCACTGGAGCCCCGAATTGGTTACGCAATCCACTTTCAGCAATACAATCCCCGTGCACGATTCCAACCAGGGATCGAGTGCTTACGCCGGTCAATCTCCGGGGTTGACCTCCTCTTTCTCATTCAAAGATTCGGTGGAGTCTGTACGGAATGTGTTGGGGAGATGGACAAAGTCGGTGGGGGAAGCTACGAGGAAGGCTGAGGATCTCGCCGGAAACACGTGGCAGCACTTGAAAACAAGCCCTAGTCTTGCGGATGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTTCTAGCAGAAGGTGGTTACGAGAGGATCTTTCGATCAACTTTTGAGACAGTTCCTGAGGAGCAGCTTCAGAATTCATTTGCATGTTACTTGTCTACGTCAGCAGGTCCGGTCATGGGAGTTTTATATGTATCTTCTGCAAAGGTTGCTTATTGTAGTGATAATCCCATATCCTACAAAGCTGGTAACCAAACTGAATGGAGTTATTATAAGGTTAGTTTGCATGTGAATTTACTGTTGTGTCTTTTGAAAATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

232

Amino Acids

25.24

Weight (kDa)

6.09

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	156 - 202	6e-07	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
Acc36I	ACCTGC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	533
AciI	CCGC	7 cut(s)	8, 45, 48, 110, 113, 119, 401
AclWI	GGATC	3 cut(s)	229, 360, 473
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	3 cut(s)	511, 667, 690
AcuI	CTGAAG	1 cut(s)	491
AcvI	CACGTG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	37, 166, 554
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	3 cut(s)	274, 382, 688
AjnI	CCWGG	1 cut(s)	216
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	3 cut(s)	335, 505, 620
AluI	AGCT	3 cut(s)	335, 505, 620
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	479
Alw44I	GTGCAC	1 cut(s)	203
AlwI	GGATC	3 cut(s)	229, 360, 473
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	3 cut(s)	39, 78, 135
ApaLI	GTGCAC	1 cut(s)	203
ApeKI	GCWGC	5 cut(s)	115, 121, 373, 407, 502
ApoI	RAATTY	3 cut(s)	511, 667, 690
Asp700I	GAANNNNTTC	1 cut(s)	692
AspS9I	GGNCC	5 cut(s)	4, 40, 78, 148, 545
AsuC2I	CCSGG	1 cut(s)	249
AvaII	GGWCC	3 cut(s)	4, 148, 545
AxyI	CCTNAGG	1 cut(s)	495
BaeGI	GKGCMC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	108, 161
BbrPI	CACGTG	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	5 cut(s)	127, 133, 385, 394, 514
BccI	CCATC	1 cut(s)	306
BceAI	ACGGC	2 cut(s)	79, 150
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	2 cut(s)	393, 443
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	8 cut(s)	48, 113, 116, 119, 122, 374, 408, 503
BlsI	GCNGC	8 cut(s)	49, 114, 117, 120, 123, 375, 409, 504
Bme1390I	CCNGG	2 cut(s)	218, 249
Bme18I	GGWCC	3 cut(s)	4, 148, 545
BmgT120I	GGNCC	5 cut(s)	4, 40, 78, 148, 545
BmiI	GGNNCC	5 cut(s)	6, 42, 105, 129, 158
BmrFI	CCNGG	2 cut(s)	218, 249
BmsI	GCATC	2 cut(s)	43, 394
BpmI	CTGGAG	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	217, 248, 411
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 166, 554
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	217, 248, 411
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	3 cut(s)	37, 166, 554
BseMII	CTCAG	4 cut(s)	50, 71, 339, 486
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	250, 512
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	5 cut(s)	127, 133, 385, 394, 514
BshFI	GGCC	3 cut(s)	41, 80, 137
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	5 cut(s)	125, 237, 248, 360, 548
BslI	CCNNNNNNNGG	3 cut(s)	37, 166, 554
BsmAI	GTCTC	1 cut(s)	479
BsnI	GGCC	3 cut(s)	41, 80, 137
Bsp1286I	GDGCHC	3 cut(s)	108, 161, 207
Bsp143I	GATC	5 cut(s)	143, 221, 352, 465, 473
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	7 cut(s)	8, 45, 48, 110, 113, 119, 401
BspANI	GGCC	3 cut(s)	41, 80, 137
BspCNI	CTCAG	4 cut(s)	49, 70, 340, 487
BspLI	GGNNCC	5 cut(s)	6, 42, 105, 129, 158
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	3 cut(s)	229, 360, 473
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	217, 248, 411
BssMI	GATC	5 cut(s)	143, 221, 352, 465, 473
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	490, 675
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	369
BstDEI	CTNAG	4 cut(s)	36, 57, 348, 495
BstDSI	CCRYGG	1 cut(s)	411
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	5 cut(s)	146, 224, 355, 468, 476
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	5 cut(s)	143, 221, 352, 465, 473
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 53, 112, 118, 121, 127, 407, 584
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	2 cut(s)	525, 665
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	2 cut(s)	216, 247
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	127, 133, 385, 394, 514
BstX2I	RGATCY	2 cut(s)	352, 465
BstYI	RGATCY	2 cut(s)	352, 465
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	3 cut(s)	41, 80, 137
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	533
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	5 cut(s)	4, 40, 78, 148, 545
Csp6I	GTAC	1 cut(s)	293
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	5 cut(s)	91, 412, 522, 553, 662
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	4 cut(s)	36, 57, 348, 495
DpnI	GATC	5 cut(s)	145, 223, 354, 467, 475
DpnII	GATC	5 cut(s)	143, 221, 352, 465, 473
EaeI	YGGCCR	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	2 cut(s)	108, 161
Eco47I	GGWCC	3 cut(s)	4, 148, 545
Eco57I	CTGAAG	1 cut(s)	491
Eco72I	CACGTG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	495
Eco91I	GGTNACC	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	2 cut(s)	108, 161
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	5 cut(s)	94, 415, 525, 556, 665
FaiI	YATR	9 cut(s)	92, 413, 523, 554, 565, 567, 608, 648, 663
FatI	CATG	5 cut(s)	90, 411, 521, 552, 661
FauI	CCCGC	3 cut(s)	15, 52, 117
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	8 cut(s)	48, 113, 116, 119, 122, 374, 408, 503
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	108, 161
Fsp4HI	GCNGC	8 cut(s)	48, 113, 116, 119, 122, 374, 408, 503
FspBI	CTAG	2 cut(s)	393, 443
GluI	GCNGC	8 cut(s)	48, 113, 116, 119, 122, 374, 408, 503
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	3 cut(s)	41, 80, 137
HapII	CCGG	5 cut(s)	125, 237, 248, 360, 548
Hin1II	CATG	5 cut(s)	94, 415, 525, 556, 665
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	4 cut(s)	34, 209, 278, 287
HpaII	CCGG	5 cut(s)	125, 237, 248, 360, 548
Hpy166II	GTNNAC	4 cut(s)	151, 205, 255, 534
Hpy188I	TCNGA	4 cut(s)	60, 103, 510, 698
Hpy188III	TCNNGA	1 cut(s)	494
Hpy8I	GTNNAC	4 cut(s)	151, 205, 255, 534
Hpy99I	CGWCG	2 cut(s)	103, 136
HpyAV	CCTTC	3 cut(s)	94, 337, 443
HpyCH4III	ACNGT	2 cut(s)	490, 675
HpyCH4IV	ACGT	2 cut(s)	368, 536
HpyCH4V	TGCA	6 cut(s)	94, 205, 425, 521, 578, 661
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 53, 112, 118, 121, 127, 407, 584
HpyF3I	CTNAG	4 cut(s)	36, 57, 348, 495
HpySE526I	ACGT	2 cut(s)	368, 536
Hsp92II	CATG	5 cut(s)	94, 415, 525, 556, 665
Kzo9I	GATC	5 cut(s)	143, 221, 352, 465, 473
LmnI	GCTCC	4 cut(s)	103, 127, 156, 499
Lsp1109I	GCAGC	5 cut(s)	127, 133, 385, 394, 514
LweI	GCATC	2 cut(s)	43, 394
MaeI	CTAG	2 cut(s)	393, 443
MaeII	ACGT	2 cut(s)	368, 536
MaeIII	GTNAC	4 cut(s)	169, 455, 524, 623
MalI	GATC	5 cut(s)	145, 223, 354, 467, 475
MboI	GATC	5 cut(s)	143, 221, 352, 465, 473
MboII	GAAGA	2 cut(s)	429, 564
MflI	RGATCY	2 cut(s)	352, 465
MhlI	GDGCHC	3 cut(s)	108, 161, 207
MluCI	AATT	6 cut(s)	73, 164, 420, 511, 667, 690
MlyI	GAGTC	2 cut(s)	28, 296
MmeI	TCCRAC	2 cut(s)	81, 237
MnlI	CCTC	6 cut(s)	268, 271, 333, 343, 456, 490
MroXI	GAANNNNTTC	1 cut(s)	692
MslI	CAYNNNNRTG	1 cut(s)	520
MspI	CCGG	5 cut(s)	125, 237, 248, 360, 548
MspR9I	CCNGG	2 cut(s)	218, 249
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	8 cut(s)	47, 53, 112, 118, 121, 127, 407, 584
NciI	CCSGG	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	5 cut(s)	143, 221, 352, 465, 473
NlaIII	CATG	5 cut(s)	94, 415, 525, 556, 665
NlaIV	GGNNCC	5 cut(s)	6, 42, 105, 129, 158
NspI	RCATGY	2 cut(s)	525, 665
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	209, 278
PflFI	GACNNNGTC	1 cut(s)	319
PkrI	GCNGC	8 cut(s)	49, 114, 117, 120, 123, 375, 409, 504
PleI	GAGTC	2 cut(s)	28, 295
PmaCI	CACGTG	1 cut(s)	369
PmlI	CACGTG	1 cut(s)	369
PpsI	GAGTC	2 cut(s)	28, 295
Ppu21I	YACGTR	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	216
PspCI	CACGTG	1 cut(s)	369
PspEI	GGTNACC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	5 cut(s)	6, 42, 105, 129, 158
PspPI	GGNCC	5 cut(s)	4, 40, 78, 148, 545
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	2 cut(s)	352, 465
PsyI	GACNNNGTC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	520
SatI	GCNGC	8 cut(s)	48, 113, 116, 119, 122, 374, 408, 503
Sau3AI	GATC	5 cut(s)	143, 221, 352, 465, 473
Sau96I	GGNCC	5 cut(s)	4, 40, 78, 148, 545
SchI	GAGTC	2 cut(s)	28, 296
ScrFI	CCNGG	2 cut(s)	218, 249
SduI	GDGCHC	3 cut(s)	108, 161, 207
SfaNI	GCATC	2 cut(s)	43, 394
SinI	GGWCC	3 cut(s)	4, 148, 545
SmiMI	CAYNNNNRTG	1 cut(s)	520
Sse9I	AATT	6 cut(s)	73, 164, 420, 511, 667, 690
SsiI	CCGC	7 cut(s)	8, 45, 48, 110, 113, 119, 401
SspMI	CTAG	2 cut(s)	393, 443
StyD4I	CCNGG	2 cut(s)	216, 247
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	490, 675
TaiI	ACGT	2 cut(s)	371, 539
TaqI	TCGA	2 cut(s)	224, 472
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	6 cut(s)	73, 164, 420, 511, 667, 690
TauI	GCSGC	3 cut(s)	50, 115, 121
TfiI	GAWTC	2 cut(s)	209, 278
TscAI	CASTG	1 cut(s)	158
TseI	GCWGC	5 cut(s)	115, 121, 373, 407, 502
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	158
Tth111I	GACNNNGTC	1 cut(s)	319
VneI	GTGCAC	1 cut(s)	203
VpaK11BI	GGWCC	3 cut(s)	4, 148, 545
XapI	RAATTY	3 cut(s)	511, 667, 690
XceI	RCATGY	2 cut(s)	525, 665
XmiI	GTMKAC	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	2 cut(s)	393, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.