Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411593.1

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 379

Gene Structure 379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411593.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 337 bp

atgtctgaatcgcaacagggatccagtccttacgtggctcactatgccccagtgctaagtccaactttctcctccgaaggttctgtgaagactgtatggaatgcatttgggacatggagaaagtccgtcggggaagctacaaagaaggctatggatatcaccggaaacacgtggcagtacttgaaaacaagccctagttttgctgatgctgccatgggaagaattacacgaggaacaaaagttttagcggaaggtggttactataggatctttcgatcgaccttatttgagattgttcctgaggagcaacttcaaaattcatttgcatgttacttat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

112

Amino Acids

12.42

Weight (kDa)

8.76

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	3 cut(s)	15, 28, 275
AcsI	RAATTY	1 cut(s)	316
AcvI	CACGTG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	184, 314
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	3 cut(s)	15, 28, 275
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	262
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmcAI	AGTACT	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	95
BsaAI	YACGTR	2 cut(s)	34, 171
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	24, 50
Bse21I	CCTNAGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	24, 50
BseRI	GAGGAG	2 cut(s)	61, 317
BseXI	GCAGC	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	20, 267, 275
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	3 cut(s)	15, 28, 275
BsrI	ACTGG	2 cut(s)	24, 50
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	20, 267, 275
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	94
BstBAI	YACGTR	2 cut(s)	34, 171
BstDEI	CTNAG	2 cut(s)	56, 300
BstDSI	CCRYGG	1 cut(s)	213
BstKTI	GATC	3 cut(s)	23, 270, 278
BstMBI	GATC	3 cut(s)	20, 267, 275
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 209
BstNSI	RCATGY	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	20, 267
BstYI	RGATCY	2 cut(s)	20, 267
Bsu36I	CCTNAGG	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	114, 214, 327
CviJI	RGCY	4 cut(s)	38, 137, 149, 192
CviKI_1	RGCY	4 cut(s)	38, 137, 149, 192
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	56, 300
DpnI	GATC	3 cut(s)	22, 269, 277
DpnII	GATC	3 cut(s)	20, 267, 275
Eco130I	CCWWGG	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	117, 217, 330
FaiI	YATR	7 cut(s)	45, 97, 115, 152, 215, 264, 328
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	3 cut(s)	113, 213, 326
Fnu4HI	GCNGC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	210
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	3 cut(s)	117, 217, 330
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	7, 76
Hpy188III	TCNNGA	1 cut(s)	299
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	71, 139, 245
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	2 cut(s)	33, 170
HpyCH4V	TGCA	2 cut(s)	104, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 209
HpyF3I	CTNAG	2 cut(s)	56, 300
HpySE526I	ACGT	2 cut(s)	33, 170
Hsp92II	CATG	3 cut(s)	117, 217, 330
Kzo9I	GATC	3 cut(s)	20, 267, 275
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	5 cut(s)	2, 37, 63, 175, 312
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	2 cut(s)	33, 170
MaeIII	GTNAC	2 cut(s)	257, 329
MalI	GATC	3 cut(s)	22, 269, 277
MboI	GATC	3 cut(s)	20, 267, 275
MboII	GAAGA	2 cut(s)	100, 231
MflI	RGATCY	2 cut(s)	20, 267
MluCI	AATT	2 cut(s)	222, 316
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	82, 224, 295
Mph1103I	ATGCAT	1 cut(s)	106
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	44, 209
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	20, 267, 275
NlaIII	CATG	3 cut(s)	117, 217, 330
NlaIV	GGNNCC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	330
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	211
Ple19I	CGATCG	1 cut(s)	278
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
Ppu21I	YACGTR	2 cut(s)	34, 171
PspCI	CACGTG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	20, 267
PvuI	CGATCG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	325
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	3 cut(s)	20, 267, 275
ScaI	AGTACT	1 cut(s)	179
SetI	ASST	6 cut(s)	36, 82, 139, 173, 256, 284
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	325
Sse9I	AATT	2 cut(s)	222, 316
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	2 cut(s)	36, 173
TaqI	TCGA	2 cut(s)	274, 278
TasI	AATT	2 cut(s)	222, 316
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.