Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003130.1

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

26511 .. 27065

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003130.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgtctgaatcgcaacagggatccagtccttacgtggctcactatgccccagtgctaagtccaactttctcctccgaaggttctgtgaagactgtatggaatgcatttgggacatggagaaagtccgtcggggaagctacaaagaaggctatggatatcaccggaaacacgtggcagcacttgaaaacaagccctagttttgctgatgctgccatgggaagaattacacgaggaacaaaagttttagcggaaggtggttactataggatctttcgatcgaccttatttgagattgttcctgaggagcaacttcaaaattcatttgcatgttacttatgtacgtcgtacagtccagtaatgggagtgttatatgtatctaatgcaaagattgcttattgcagtgataatcctattttatacaaagctgaaaaccagactgaatgtagctattataaggtggttttcccactgcatcagcttaaagcagttaattcttcgttaagcagatccaatcctggtgaaaagtacatacatattaattattatctcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

184

Amino Acids

20.58

Weight (kDa)

8.8

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	4 cut(s)	15, 28, 275, 501
AcsI	RAATTY	1 cut(s)	316
AcvI	CACGTG	1 cut(s)	171
AfaI	GTAC	3 cut(s)	340, 347, 527
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	184, 314
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	4 cut(s)	137, 425, 447, 478
AluI	AGCT	4 cut(s)	137, 425, 447, 478
AlwI	GGATC	4 cut(s)	15, 28, 275, 501
ApeKI	GCWGC	2 cut(s)	175, 209
ApoI	RAATTY	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	151, 530
AxyI	CCTNAGG	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	187, 196
BciT130I	CCWGG	1 cut(s)	516
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	262
BisI	GCNGC	2 cut(s)	176, 210
BlsI	GCNGC	2 cut(s)	177, 211
Bme1390I	CCNGG	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	516
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	196, 481
BmuI	ACTGGG	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	95
BsaAI	YACGTR	2 cut(s)	34, 171
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	24, 50, 353
Bse21I	CCTNAGG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	3 cut(s)	24, 50, 353
BseRI	GAGGAG	2 cut(s)	61, 317
BseXI	GCAGC	2 cut(s)	187, 196
Bsh1285I	CGRYCG	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	20, 267, 275, 506
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	4 cut(s)	15, 28, 275, 501
BsrI	ACTGG	3 cut(s)	24, 50, 353
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	4 cut(s)	20, 267, 275, 506
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	94, 350
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBAI	YACGTR	2 cut(s)	34, 171
BstDEI	CTNAG	2 cut(s)	56, 300
BstDSI	CCRYGG	1 cut(s)	213
BstKTI	GATC	4 cut(s)	23, 270, 278, 509
BstMBI	GATC	4 cut(s)	20, 267, 275, 506
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 209, 389
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	187, 196
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	3 cut(s)	20, 267, 506
BstYI	RGATCY	3 cut(s)	20, 267, 506
Bsu36I	CCTNAGG	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	213
BtsI	GCAGTG	2 cut(s)	406, 467
BtsIMutI	CAGTG	3 cut(s)	57, 406, 467
Csp6I	GTAC	3 cut(s)	339, 346, 526
CviAII	CATG	3 cut(s)	114, 214, 327
CviJI	RGCY	7 cut(s)	38, 137, 149, 192, 425, 447, 478
CviKI_1	RGCY	7 cut(s)	38, 137, 149, 192, 425, 447, 478
CviQI	GTAC	3 cut(s)	339, 346, 526
DdeI	CTNAG	2 cut(s)	56, 300
DpnI	GATC	4 cut(s)	22, 269, 277, 508
DpnII	GATC	4 cut(s)	20, 267, 275, 506
Eco130I	CCWWGG	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	514
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	117, 217, 330
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	3 cut(s)	113, 213, 326
Fnu4HI	GCNGC	2 cut(s)	176, 210
Fsp4HI	GCNGC	2 cut(s)	176, 210
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	176, 210
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	3 cut(s)	117, 217, 330
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	151, 530
Hpy188I	TCNGA	2 cut(s)	7, 76
Hpy188III	TCNNGA	1 cut(s)	299
Hpy99I	CGWCG	2 cut(s)	131, 346
HpyAV	CCTTC	3 cut(s)	71, 139, 245
HpyCH4III	ACNGT	2 cut(s)	94, 350
HpyCH4IV	ACGT	3 cut(s)	33, 170, 341
HpyCH4V	TGCA	5 cut(s)	104, 326, 383, 399, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 209, 389
HpyF3I	CTNAG	2 cut(s)	56, 300
HpySE526I	ACGT	3 cut(s)	33, 170, 341
Hsp92II	CATG	3 cut(s)	117, 217, 330
Kzo9I	GATC	4 cut(s)	20, 267, 275, 506
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	9 cut(s)	2, 37, 63, 175, 312, 366, 446, 501, 528
Lsp1109I	GCAGC	2 cut(s)	187, 196
LweI	GCATC	2 cut(s)	196, 481
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	3 cut(s)	33, 170, 341
MaeIII	GTNAC	2 cut(s)	257, 329
MalI	GATC	4 cut(s)	22, 269, 277, 508
MboI	GATC	4 cut(s)	20, 267, 275, 506
MboII	GAAGA	3 cut(s)	100, 231, 486
MflI	RGATCY	3 cut(s)	20, 267, 506
MluCI	AATT	4 cut(s)	222, 316, 490, 538
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	82, 224, 295
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	4 cut(s)	480, 489, 500, 537
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	44, 209, 389
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	4 cut(s)	20, 267, 275, 506
NlaIII	CATG	3 cut(s)	117, 217, 330
NlaIV	GGNNCC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	330
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	177, 211
Ple19I	CGATCG	1 cut(s)	278
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
Ppu21I	YACGTR	2 cut(s)	34, 171
PshBI	ATTAAT	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	514
PspCI	CACGTG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	22
PsuI	RGATCY	3 cut(s)	20, 267, 506
PvuI	CGATCG	1 cut(s)	278
RsaI	GTAC	3 cut(s)	340, 347, 527
RsaNI	GTAC	3 cut(s)	339, 346, 526
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	4 cut(s)	480, 489, 500, 537
SatI	GCNGC	2 cut(s)	176, 210
Sau3AI	GATC	4 cut(s)	20, 267, 275, 506
ScrFI	CCNGG	1 cut(s)	516
SfaNI	GCATC	2 cut(s)	196, 481
SfcI	CTRYAG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	222, 316, 490, 538
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	94, 350
TaiI	ACGT	3 cut(s)	36, 173, 344
TaqI	TCGA	2 cut(s)	274, 278
TasI	AATT	4 cut(s)	222, 316, 490, 538
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	480, 489, 500, 537
Tru9I	TTAA	4 cut(s)	480, 489, 500, 537
TscAI	CASTG	3 cut(s)	57, 406, 474
TseI	GCWGC	2 cut(s)	175, 209
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	57, 406, 474
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.