Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

6796475 .. 6799357

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGACCCGCCCAAGCCCACCGCCGAGGCCGATTCCAAAACGCAGACTCCGGCCGCCCAGGATCCGAACCCGAAGTCTACAGCCGAAGCCCTGAACGGGGATGCGAACTGGGCGAGCTTCGTGATGGGCTCGCAGGCTCAGGCTCAGCCGACTCTGACGGAGGCGTTCTCCACTCCCACGGGTTACGGGTCGAAGAAATCGGTTCGTTGGAGCCCGGAATTGGTGTCCGAGTCGCACGCTGCCGCGTCGGATCACTCTTCCCATCAGGGATCCAATACCTACGTGGCCCCCTCCCCTACGCTCTCACAATCTCTCTCATTCAAAGATTCGGTGGAGACTGTGCGGAACGTGTTTGGGAGGTGGAGGAAGTCGGTGGGGGAAGCTACGAAGAAGGCGGAGGATCTCGCCGGAAACACGTGGCAGCACTTAAAAACAAGCCCCAGTTTTGCTGATGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTTCTAGCAGAAGGTGGTTACGAGAAGATCGATCGATCAACCTTTGAGACAACTCTCGAGGAGCAACTTCAAAATTCATTGGCATGTTACTTGTCCACATCAGCTGGTACAGTCATGGGAGTTTTATATGTTTCTACTGCAAAGCTTGCCTACTGCAGTGATAATCCCATCTCATACAAAGCTGAGAGCCAAACCGAATGGAGCTATTACAAGGTGGTTATACCGTTACATCAGCTTAAAGCAGTCAATCCATCGTCAAGCAGATCGAACCCTGCTGAAAAGTACATTCAGGTTATCTCCGTTGATAACCATGAGTTCTGGTTTATGGGATTCTTAAATTATGATGGTGCCGTCATTTGCCTACAAGAAGCTCTCCAAGCTCGGAACTCATCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

295

Amino Acids

31.88

Weight (kDa)

5.72

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	833
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	245
AciI	CCGC	6 cut(s)	8, 21, 54, 243, 343, 395
AclWI	GGATC	6 cut(s)	56, 69, 258, 264, 277, 408
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	559
AcvI	CACGTG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	595, 770
AfiI	CCNNNNNNNGG	3 cut(s)	96, 97, 220
AflIII	ACRYGT	2 cut(s)	348, 414
AgsI	TTSAA	2 cut(s)	322, 557
AjnI	CCWGG	1 cut(s)	57
AloI	GAACNNNNNNTCC	2 cut(s)	471, 503
AluBI	AGCT	9 cut(s)	117, 383, 590, 631, 668, 690, 721, 857, 866
AluI	AGCT	9 cut(s)	117, 383, 590, 631, 668, 690, 721, 857, 866
Alw26I	GTCTC	2 cut(s)	329, 527
AlwI	GGATC	6 cut(s)	56, 69, 258, 264, 277, 408
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	3 cut(s)	27, 51, 285
ApeKI	GCWGC	3 cut(s)	239, 421, 455
ApoI	RAATTY	1 cut(s)	559
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspS9I	GGNCC	2 cut(s)	4, 286
AsuC2I	CCSGG	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	2 cut(s)	61, 269
BanI	GGYRCC	1 cut(s)	833
BanII	GRGCYC	2 cut(s)	131, 215
BbrPI	CACGTG	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	226, 433, 442
BccI	CCATC	5 cut(s)	118, 270, 662, 745, 824
BceAI	ACGGC	1 cut(s)	821
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	329, 527
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	2 cut(s)	78, 640
BisI	GCNGC	5 cut(s)	54, 240, 243, 422, 456
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	5 cut(s)	55, 241, 244, 423, 457
Bme1390I	CCNGG	2 cut(s)	59, 215
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	4, 286
BmiI	GGNNCC	6 cut(s)	6, 63, 212, 271, 288, 835
BmrFI	CCNGG	2 cut(s)	59, 215
BmrI	ACTGGG	2 cut(s)	118, 435
BmsI	GCATC	2 cut(s)	91, 442
BmuI	ACTGGG	2 cut(s)	118, 435
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	2 cut(s)	516, 520
BsaAI	YACGTR	2 cut(s)	283, 417
BsaJI	CCNNGG	4 cut(s)	24, 57, 177, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 97, 220
Bse1I	ACTGG	2 cut(s)	113, 441
BseBI	CCWGG	1 cut(s)	59
BseCI	ATCGAT	2 cut(s)	516, 520
BseDI	CCNNGG	4 cut(s)	24, 57, 177, 459
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	3 cut(s)	96, 97, 220
BseMII	CTCAG	3 cut(s)	152, 158, 660
BseNI	ACTGG	2 cut(s)	113, 441
BseRI	GAGGAG	1 cut(s)	560
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	226, 433, 442
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	2 cut(s)	54, 520
BshFI	GGCC	3 cut(s)	29, 53, 287
BshNI	GGYRCC	1 cut(s)	833
BshVI	ATCGAT	2 cut(s)	516, 520
BsiEI	CGRYCG	2 cut(s)	54, 520
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	3 cut(s)	50, 215, 408
BslI	CCNNNNNNNGG	3 cut(s)	96, 97, 220
BsmAI	GTCTC	2 cut(s)	329, 527
BsnI	GGCC	3 cut(s)	29, 53, 287
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	131, 215
Bsp143I	GATC	8 cut(s)	61, 250, 269, 400, 513, 517, 521, 749
Bsp1720I	GCTNAGC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	6 cut(s)	8, 21, 54, 243, 343, 395
BspANI	GGCC	3 cut(s)	29, 53, 287
BspCNI	CTCAG	3 cut(s)	151, 157, 661
BspDI	ATCGAT	2 cut(s)	516, 520
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	6 cut(s)	6, 63, 212, 271, 288, 835
BspMAI	CTGCAG	1 cut(s)	644
BspPI	GGATC	6 cut(s)	56, 69, 258, 264, 277, 408
BspT107I	GGYRCC	1 cut(s)	833
BsrI	ACTGG	2 cut(s)	113, 441
BssECI	CCNNGG	4 cut(s)	24, 57, 177, 459
BssMI	GATC	8 cut(s)	61, 250, 269, 400, 513, 517, 521, 749
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	340, 598, 711
Bst6I	CTCTTC	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstBAI	YACGTR	2 cut(s)	283, 417
BstC8I	GCNNGC	5 cut(s)	115, 131, 135, 237, 633
BstDEI	CTNAG	3 cut(s)	138, 144, 669
BstDSI	CCRYGG	2 cut(s)	177, 459
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	8 cut(s)	64, 253, 272, 403, 516, 520, 524, 752
BstMAI	GTCTC	2 cut(s)	329, 527
BstMBI	GATC	8 cut(s)	61, 250, 269, 400, 513, 517, 521, 749
BstMCI	CGRYCG	2 cut(s)	54, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 455, 632, 863
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	2 cut(s)	57, 213
BstSFI	CTRYAG	2 cut(s)	78, 640
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	226, 433, 442
BstX2I	RGATCY	3 cut(s)	61, 269, 400
BstYI	RGATCY	3 cut(s)	61, 269, 400
BstZI	CGGCCG	1 cut(s)	51
Bsu15I	ATCGAT	2 cut(s)	516, 520
BsuRI	GGCC	3 cut(s)	29, 53, 287
BsuTUI	ATCGAT	2 cut(s)	516, 520
BtgI	CCRYGG	2 cut(s)	177, 459
BtsCI	GGATG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	5 cut(s)	115, 131, 135, 237, 633
Cfr13I	GGNCC	2 cut(s)	4, 286
ClaI	ATCGAT	2 cut(s)	516, 520
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	594, 769
CviAII	CATG	4 cut(s)	460, 570, 601, 797
CviQI	GTAC	2 cut(s)	594, 769
DdeI	CTNAG	3 cut(s)	138, 144, 669
DpnI	GATC	8 cut(s)	63, 252, 271, 402, 515, 519, 523, 751
DpnII	GATC	8 cut(s)	61, 250, 269, 400, 513, 517, 521, 749
EaeI	YGGCCR	1 cut(s)	51
EagI	CGGCCG	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	410
EclXI	CGGCCG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	2 cut(s)	131, 215
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	2 cut(s)	131, 215
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	4 cut(s)	463, 573, 604, 800
FatI	CATG	4 cut(s)	459, 569, 600, 796
FauI	CCCGC	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	5 cut(s)	54, 240, 243, 422, 456
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	2 cut(s)	131, 215
Fsp4HI	GCNGC	5 cut(s)	54, 240, 243, 422, 456
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	5 cut(s)	54, 240, 243, 422, 456
HaeIII	GGCC	3 cut(s)	29, 53, 287
HapII	CCGG	3 cut(s)	50, 215, 408
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	463, 573, 604, 800
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	6 cut(s)	32, 46, 151, 230, 326, 816
HpaII	CCGG	3 cut(s)	50, 215, 408
Hpy166II	GTNNAC	2 cut(s)	78, 582
Hpy188I	TCNGA	5 cut(s)	66, 156, 229, 250, 870
Hpy188III	TCNNGA	2 cut(s)	121, 542
Hpy8I	GTNNAC	2 cut(s)	78, 582
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	385, 491
HpyCH4III	ACNGT	3 cut(s)	340, 598, 711
HpyCH4IV	ACGT	3 cut(s)	282, 348, 416
HpyCH4V	TGCA	3 cut(s)	473, 626, 642
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 455, 632, 863
HpyF3I	CTNAG	3 cut(s)	138, 144, 669
HpySE526I	ACGT	3 cut(s)	282, 348, 416
Hsp92II	CATG	4 cut(s)	463, 573, 604, 800
Kzo9I	GATC	8 cut(s)	61, 250, 269, 400, 513, 517, 521, 749
LmnI	GCTCC	3 cut(s)	210, 547, 687
Lsp1109I	GCAGC	3 cut(s)	226, 433, 442
LweI	GCATC	2 cut(s)	91, 442
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	3 cut(s)	282, 348, 416
MaeIII	GTNAC	4 cut(s)	182, 503, 572, 711
MalI	GATC	8 cut(s)	63, 252, 271, 402, 515, 519, 523, 751
MboI	GATC	8 cut(s)	61, 250, 269, 400, 513, 517, 521, 749
MboII	GAAGA	5 cut(s)	205, 249, 400, 477, 523
MflI	RGATCY	3 cut(s)	61, 269, 400
MhlI	GDGCHC	2 cut(s)	131, 215
MluCI	AATT	4 cut(s)	218, 468, 559, 823
MlyI	GAGTC	3 cut(s)	40, 145, 239
MmeI	TCCRAC	2 cut(s)	188, 228
MnlI	CCTC	7 cut(s)	19, 154, 301, 351, 357, 391, 538
MseI	TTAA	3 cut(s)	428, 723, 821
MslI	CAYNNNNRTG	1 cut(s)	568
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	3 cut(s)	50, 215, 408
MspR9I	CCNGG	2 cut(s)	59, 215
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	110, 455, 632, 863
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	8 cut(s)	61, 250, 269, 400, 513, 517, 521, 749
NlaIII	CATG	4 cut(s)	463, 573, 604, 800
NlaIV	GGNNCC	6 cut(s)	6, 63, 212, 271, 288, 835
NmeAIII	GCCGAG	1 cut(s)	49
NspI	RCATGY	1 cut(s)	573
PaeR7I	CTCGAG	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	32, 326, 816
PkrI	GCNGC	5 cut(s)	55, 241, 244, 423, 457
Ple19I	CGATCG	1 cut(s)	520
PleI	GAGTC	3 cut(s)	40, 145, 238
PmaCI	CACGTG	1 cut(s)	417
PmlI	CACGTG	1 cut(s)	417
PpsI	GAGTC	3 cut(s)	40, 145, 238
Ppu21I	YACGTR	2 cut(s)	283, 417
Psp6I	CCWGG	1 cut(s)	57
PspCI	CACGTG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	6 cut(s)	6, 63, 212, 271, 288, 835
PspPI	GGNCC	2 cut(s)	4, 286
PstI	CTGCAG	1 cut(s)	644
PsuI	RGATCY	3 cut(s)	61, 269, 400
PvuI	CGATCG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	2 cut(s)	595, 770
RsaNI	GTAC	2 cut(s)	594, 769
RseI	CAYNNNNRTG	1 cut(s)	568
SaqAI	TTAA	3 cut(s)	428, 723, 821
SatI	GCNGC	5 cut(s)	54, 240, 243, 422, 456
Sau3AI	GATC	8 cut(s)	61, 250, 269, 400, 513, 517, 521, 749
Sau96I	GGNCC	2 cut(s)	4, 286
SchI	GAGTC	3 cut(s)	40, 145, 239
ScrFI	CCNGG	2 cut(s)	59, 215
SduI	GDGCHC	2 cut(s)	131, 215
SfaNI	GCATC	2 cut(s)	91, 442
SfcI	CTRYAG	2 cut(s)	78, 640
Sfr274I	CTCGAG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	568
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	4 cut(s)	218, 468, 559, 823
SsiI	CCGC	6 cut(s)	8, 21, 54, 243, 343, 395
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	57, 213
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	340, 598, 711
TaiI	ACGT	3 cut(s)	285, 351, 419
TaqI	TCGA	5 cut(s)	191, 516, 520, 543, 752
TasI	AATT	4 cut(s)	218, 468, 559, 823
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	2 cut(s)	56, 245
TfiI	GAWTC	3 cut(s)	32, 326, 816
Tru1I	TTAA	3 cut(s)	428, 723, 821
Tru9I	TTAA	3 cut(s)	428, 723, 821
TscAI	CASTG	1 cut(s)	649
TseI	GCWGC	3 cut(s)	239, 421, 455
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	2 cut(s)	173, 775
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	573
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.