Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Forward (+)

20356058 .. 20359919

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G195900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGACCCGCCCAAGCCCGTCTCCGAGGCCGAGGCCAAAACGCAGGCTCCGAACCAGACTCAAGATCCGAACCCGAAAGCGGCTGGCGAAGCTCTGAACGGGGATCAGAACTGGGCTACCTTCGTCATGGGATCACAGGCTCAGACTCAGACCGAGGCCTCCGGGACTCCCACGGGTTCCGGGCCCAAGAAGTCTGTTCATTGGAGCCCCGAATTGGTCTCCGAATCGCACAACAGTAGCGCCGGTGTCGCCTCTGATTCGCATCAGGGATCCAATCCCTACGTGGCTCCTTCCCCAATGCTCACCTCCTCTTTCTCATTCAAAGATTCGGTGGAGACTGTAAGGGGCGTATTTGGGAGGTGGAGAAAGTCGGTGGGGGAGGCTACTAAGAAGGCTGAGGATCTCGCTGGAAACACGTGGCAGCACTTGAAAACAAGCCCTAGTTTTGCTGATGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTTCTAGCAGAAGGTGGTTATGAGAAGATCTTCCAGTCAACCTTTGAGACAGCTCCTGAGGAGCAACTTCAAAATTCATTTGCATGTTACTTATCCACATCAGCTGGTCCAGTCATGGGAGTTTTATATGTTTCTACCGCAAAACTTGCTTATTGTAGTGATAATCCCATTTCATACAAAGCTGATGACCAAACTGAATGGAGCTATTACAAGGTGGTTATCCCATTACATCAGCTTAAAGCAGTTAATCCTTCATCAAGCAGATCAAACCCTGCTGAAAAGTACATCCAGGTTATCTCCGTTGATAACCATGAGTTTTGGTTCATGGGCTTCTTAAATTATGATGGTGCTGTGCAATCCCTACAAGAAGCTCTGCAAGCCCGGAGCTCATGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

295

Amino Acids

31.73

Weight (kDa)

5.41

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	8, 80, 624
AclWI	GGATC	6 cut(s)	59, 111, 139, 264, 277, 408
AcsI	RAATTY	1 cut(s)	559
AcvI	CACGTG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	770
AfiI	CCNNNNNNNGG	3 cut(s)	79, 214, 602
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	322, 430, 557
AjnI	CCWGG	1 cut(s)	774
AloI	GAACNNNNNNTCC	2 cut(s)	471, 503
AluBI	AGCT	8 cut(s)	92, 539, 590, 668, 690, 721, 857, 873
AluI	AGCT	8 cut(s)	92, 539, 590, 668, 690, 721, 857, 873
Alw21I	GWGCWC	1 cut(s)	875
Alw26I	GTCTC	4 cut(s)	25, 223, 329, 527
AlwI	GGATC	6 cut(s)	59, 111, 139, 264, 277, 408
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	4 cut(s)	27, 33, 156, 182
ApaI	GGGCCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	421, 455
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	4 cut(s)	4, 182, 183, 593
AsuC2I	CCSGG	3 cut(s)	163, 181, 868
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	2 cut(s)	4, 593
AxyI	CCTNAGG	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	269
BanII	GRGCYC	3 cut(s)	186, 209, 875
BbrPI	CACGTG	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	875
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	433, 442
BccI	CCATC	1 cut(s)	824
BciT130I	CCWGG	1 cut(s)	776
BcnI	CCSGG	3 cut(s)	163, 181, 868
BcoDI	GTCTC	4 cut(s)	25, 223, 329, 527
BfaI	CTAG	2 cut(s)	441, 491
BfoI	RGCGCY	1 cut(s)	243
BglII	AGATCT	1 cut(s)	513
BisI	GCNGC	3 cut(s)	81, 422, 456
BlsI	GCNGC	3 cut(s)	82, 423, 457
Bme1390I	CCNGG	4 cut(s)	163, 181, 776, 868
Bme18I	GGWCC	2 cut(s)	4, 593
BmgT120I	GGNCC	4 cut(s)	4, 182, 183, 593
BmiI	GGNNCC	7 cut(s)	6, 48, 178, 184, 206, 271, 288
BmrFI	CCNGG	4 cut(s)	163, 181, 776, 868
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	271, 442
BmuI	ACTGGG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	45
BpuMI	CCSGG	3 cut(s)	163, 181, 868
BsaAI	YACGTR	2 cut(s)	283, 417
BsaBI	GATNNNNATC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	5 cut(s)	24, 30, 153, 171, 459
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 61, 862
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 214, 602
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	3 cut(s)	116, 520, 596
Bse21I	CCTNAGG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	5 cut(s)	24, 30, 153, 171, 459
BseGI	GGATG	1 cut(s)	771
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	3 cut(s)	79, 214, 602
BseMII	CTCAG	4 cut(s)	155, 161, 387, 534
BseNI	ACTGG	3 cut(s)	116, 520, 596
BseRI	GAGGAG	2 cut(s)	298, 560
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	433, 442
BshFI	GGCC	4 cut(s)	29, 35, 158, 184
BsiHKAI	GWGCWC	1 cut(s)	875
BsiSI	CCGG	4 cut(s)	162, 180, 243, 868
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	79, 214, 602
BsmAI	GTCTC	4 cut(s)	25, 223, 329, 527
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	29, 35, 158, 184
Bso31I	GGTCTC	1 cut(s)	223
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	186, 209, 875
Bsp143I	GATC	7 cut(s)	64, 103, 131, 269, 400, 513, 749
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	3 cut(s)	8, 80, 624
BspANI	GGCC	4 cut(s)	29, 35, 158, 184
BspCNI	CTCAG	4 cut(s)	154, 160, 388, 535
BspLI	GGNNCC	7 cut(s)	6, 48, 178, 184, 206, 271, 288
BspPI	GGATC	6 cut(s)	59, 111, 139, 264, 277, 408
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	116, 520, 596
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	5 cut(s)	24, 30, 153, 171, 459
BssMI	GATC	7 cut(s)	64, 103, 131, 269, 400, 513, 749
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	2 cut(s)	236, 340
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstBAI	YACGTR	2 cut(s)	283, 417
BstC8I	GCNNGC	3 cut(s)	45, 85, 864
BstDEI	CTNAG	5 cut(s)	141, 147, 387, 396, 543
BstDSI	CCRYGG	2 cut(s)	171, 459
BstF5I	GGATG	1 cut(s)	771
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	7 cut(s)	67, 106, 134, 272, 403, 516, 752
BstMAI	GTCTC	4 cut(s)	25, 223, 329, 527
BstMBI	GATC	7 cut(s)	64, 103, 131, 269, 400, 513, 749
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 248, 455, 632, 863
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	4 cut(s)	161, 179, 774, 866
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	433, 442
BstX2I	RGATCY	4 cut(s)	64, 269, 400, 513
BstYI	RGATCY	4 cut(s)	64, 269, 400, 513
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	4 cut(s)	29, 35, 158, 184
BtgI	CCRYGG	2 cut(s)	171, 459
BtsCI	GGATG	1 cut(s)	771
Cac8I	GCNNGC	3 cut(s)	45, 85, 864
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	4 cut(s)	4, 182, 183, 593
Csp6I	GTAC	1 cut(s)	769
CviAII	CATG	7 cut(s)	127, 460, 570, 601, 797, 811, 876
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	5 cut(s)	141, 147, 387, 396, 543
DpnI	GATC	7 cut(s)	66, 105, 133, 271, 402, 515, 751
DpnII	GATC	7 cut(s)	64, 103, 131, 269, 400, 513, 749
Ecl136II	GAGCTC	1 cut(s)	873
Eco130I	CCWWGG	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	3 cut(s)	186, 209, 875
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	4, 593
Eco53kI	GAGCTC	1 cut(s)	873
Eco72I	CACGTG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	873
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	3 cut(s)	186, 209, 875
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	7 cut(s)	130, 463, 573, 604, 800, 814, 879
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	7 cut(s)	126, 459, 569, 600, 796, 810, 875
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	81, 422, 456
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	3 cut(s)	186, 209, 875
Fsp4HI	GCNGC	3 cut(s)	81, 422, 456
FspBI	CTAG	2 cut(s)	441, 491
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	3 cut(s)	81, 422, 456
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	29, 35, 158, 184
HapII	CCGG	4 cut(s)	162, 180, 243, 868
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	7 cut(s)	130, 463, 573, 604, 800, 814, 879
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HinfI	GANTC	6 cut(s)	58, 145, 166, 224, 257, 326
HpaII	CCGG	4 cut(s)	162, 180, 243, 868
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	9 cut(s)	25, 51, 69, 96, 108, 144, 150, 223, 256
Hpy188III	TCNNGA	2 cut(s)	62, 542
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	5 cut(s)	130, 300, 385, 491, 747
HpyCH4III	ACNGT	2 cut(s)	236, 340
HpyCH4IV	ACGT	2 cut(s)	282, 416
HpyCH4V	TGCA	4 cut(s)	473, 569, 841, 862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 248, 455, 632, 863
HpyF3I	CTNAG	5 cut(s)	141, 147, 387, 396, 543
HpySE526I	ACGT	2 cut(s)	282, 416
Hsp92II	CATG	7 cut(s)	130, 463, 573, 604, 800, 814, 879
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	7 cut(s)	64, 103, 131, 269, 400, 513, 749
LmnI	GCTCC	7 cut(s)	52, 204, 292, 544, 547, 687, 870
Lsp1109I	GCAGC	2 cut(s)	433, 442
LweI	GCATC	2 cut(s)	271, 442
MaeI	CTAG	2 cut(s)	441, 491
MaeII	ACGT	2 cut(s)	282, 416
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	7 cut(s)	66, 105, 133, 271, 402, 515, 751
MboI	GATC	7 cut(s)	64, 103, 131, 269, 400, 513, 749
MboII	GAAGA	3 cut(s)	477, 508, 523
MflI	RGATCY	4 cut(s)	64, 269, 400, 513
MhlI	GDGCHC	3 cut(s)	186, 209, 875
MluCI	AATT	4 cut(s)	212, 468, 559, 823
MlyI	GAGTC	3 cut(s)	52, 139, 160
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	3 cut(s)	723, 732, 821
MslI	CAYNNNNRTG	2 cut(s)	568, 880
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	4 cut(s)	162, 180, 243, 868
MspR9I	CCNGG	4 cut(s)	163, 181, 776, 868
MvaI	CCWGG	1 cut(s)	776
MwoI	GCNNNNNNNGC	5 cut(s)	89, 248, 455, 632, 863
NciI	CCSGG	3 cut(s)	163, 181, 868
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	7 cut(s)	64, 103, 131, 269, 400, 513, 749
NlaIII	CATG	7 cut(s)	130, 463, 573, 604, 800, 814, 879
NlaIV	GGNNCC	7 cut(s)	6, 48, 178, 184, 206, 271, 288
NmeAIII	GCCGAG	1 cut(s)	55
NspI	RCATGY	1 cut(s)	573
PceI	AGGCCT	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	224, 257, 326
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	82, 423, 457
PleI	GAGTC	3 cut(s)	52, 139, 160
PmaCI	CACGTG	1 cut(s)	417
PmlI	CACGTG	1 cut(s)	417
PpsI	GAGTC	3 cut(s)	52, 139, 160
Ppu21I	YACGTR	2 cut(s)	283, 417
Psp124BI	GAGCTC	1 cut(s)	875
Psp6I	CCWGG	1 cut(s)	774
PspCI	CACGTG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	7 cut(s)	6, 48, 178, 184, 206, 271, 288
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	4 cut(s)	4, 182, 183, 593
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	4 cut(s)	64, 269, 400, 513
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
RseI	CAYNNNNRTG	2 cut(s)	568, 880
SacI	GAGCTC	1 cut(s)	875
SaqAI	TTAA	3 cut(s)	723, 732, 821
SatI	GCNGC	3 cut(s)	81, 422, 456
Sau3AI	GATC	7 cut(s)	64, 103, 131, 269, 400, 513, 749
Sau96I	GGNCC	4 cut(s)	4, 182, 183, 593
SchI	GAGTC	3 cut(s)	52, 139, 160
ScrFI	CCNGG	4 cut(s)	163, 181, 776, 868
SduI	GDGCHC	3 cut(s)	186, 209, 875
SfaNI	GCATC	2 cut(s)	271, 442
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	2 cut(s)	4, 593
SmiMI	CAYNNNNRTG	2 cut(s)	568, 880
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	4 cut(s)	212, 468, 559, 823
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	3 cut(s)	8, 80, 624
SspMI	CTAG	2 cut(s)	441, 491
SstI	GAGCTC	1 cut(s)	875
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	4 cut(s)	161, 179, 774, 866
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	236, 340
TaiI	ACGT	2 cut(s)	285, 419
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	4 cut(s)	212, 468, 559, 823
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	224, 257, 326
Tru1I	TTAA	3 cut(s)	723, 732, 821
Tru9I	TTAA	3 cut(s)	723, 732, 821
TseI	GCWGC	2 cut(s)	421, 455
TspDTI	ATGAA	5 cut(s)	188, 552, 648, 729, 799
TspGWI	ACGGA	1 cut(s)	775
VpaK11BI	GGWCC	2 cut(s)	4, 593
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	573
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	2 cut(s)	441, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.