Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004307

Physical Location & Seq

Genomic Coordinates Reverse (-)

36599383 .. 36599788

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1310900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGTCGGTGGGGGAAGATACGAAGAAGGCGGAGGATCTCGCCGGAAACACGTGGCAACACTTAAAAACAAGCCCTAGTTTTGTTGATGCTGCCATGGGAAGAATTGCACAAGGAACAAAGGTTATAGCAGAAGGTGGTTACGAGAAGATCTTTCGATCAACCTTTGAGACAACTCCCGATGAGCAACTTCAAAATTCATTTGCATGTTACTTGTCCACATCAGCTAGTCCAGTCATGGGAGTTTTATATGTTTCTACTGCAAAGCTTGTCTATTGCAGTGATAATCCCATTTCATACAAAGTTGAGAGCCAAACTGAATGGAGCTATTACAAGGTTACAAGTCCAGTTCCGTCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010482 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051276 GO:0051302 GO:0051567 GO:0061647 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

121

Amino Acids

13.18

Weight (kDa)

5.33

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	51 - 97	7.4e-08	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40100
fragaria_vesca	FvH4_1g20050 FvH4_4g28530
malus_domestica	MD02G1310900.v1.1 MD15G1316400.v1.1
prunus_persica	Prupe.6G195900_v2.0.a1
pyrus_communis	pycom01g06460 pycom01g06470 pycom15g27920
rosa_chinensis	RchiOBHm_Chr2g0112041 RchiOBHm_Chr4g0436531
rosa_laevigata	RLG00000017944 RLG00000032209
rosa_multiflora	Rmu_co8411593.1_g000001 Rmu_sc0003130.1_g000006 Rmu_sc0035047.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131840 Rroxscaffold_4G00324750
rosa_rugosa	Rorug02G0178000 Rorug02G0178000 Rorug04G0294600
rosa_samantha	Rh1CG068400 Rh1DG073100 Rh2AG230100 Rh2BG243100 Rh2CG234400 Rh2DG238000 Rh4AG348900 Rh4DG351500
rosa_wichuraiana	Rw1G005630 Rw2G017820 Rw4G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	196
AcvI	CACGTG	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	3 cut(s)	227, 268, 327
AluI	AGCT	3 cut(s)	227, 268, 327
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	196
BbrPI	CACGTG	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	78, 228
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	233, 347
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	233, 347
BseXI	GCAGC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	37, 150, 158
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	233, 347
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	3 cut(s)	37, 150, 158
BssT1I	CCWWGG	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	40, 153, 161
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	37, 150, 158
BstNSI	RCATGY	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	37, 150
BstYI	RGATCY	2 cut(s)	37, 150
BtgI	CCRYGG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
CviAII	CATG	4 cut(s)	97, 207, 238, 360
CviJI	RGCY	5 cut(s)	75, 227, 268, 312, 327
CviKI_1	RGCY	5 cut(s)	75, 227, 268, 312, 327
DpnI	GATC	3 cut(s)	39, 152, 160
DpnII	GATC	3 cut(s)	37, 150, 158
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	96
Eco72I	CACGTG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	4 cut(s)	100, 210, 241, 363
FaiI	YATR	8 cut(s)	98, 128, 208, 239, 250, 252, 298, 361
FatI	CATG	4 cut(s)	96, 206, 237, 359
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	78, 228
GluI	GCNGC	1 cut(s)	93
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	4 cut(s)	100, 210, 241, 363
HindIII	AAGCTT	1 cut(s)	266
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	2 cut(s)	22, 128
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	110, 206, 263, 279
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	100, 210, 241, 363
Kzo9I	GATC	3 cut(s)	37, 150, 158
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	2 cut(s)	58, 246
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	2 cut(s)	78, 228
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	3 cut(s)	140, 209, 337
MalI	GATC	3 cut(s)	39, 152, 160
MboI	GATC	3 cut(s)	37, 150, 158
MboII	GAAGA	4 cut(s)	29, 37, 114, 160
MflI	RGATCY	2 cut(s)	37, 150
MluCI	AATT	2 cut(s)	105, 196
MnlI	CCTC	1 cut(s)	28
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	205
MspI	CCGG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	3 cut(s)	37, 150, 158
NlaIII	CATG	4 cut(s)	100, 210, 241, 363
NspI	RCATGY	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	54
PmlI	CACGTG	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	54
PspCI	CACGTG	1 cut(s)	54
PsuI	RGATCY	2 cut(s)	37, 150
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	37, 150, 158
SetI	ASST	8 cut(s)	56, 126, 139, 167, 229, 270, 329, 339
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	105, 196
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	78, 228
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	157
TasI	AATT	2 cut(s)	105, 196
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	17, 189, 285
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	210
XspI	CTAG	2 cut(s)	78, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.